Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:28:00 (30041): wrapper (7.7.26015): starting
00:28:00 (30041): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 00:28:00] Arguments: --nthreads 8
[2025-11-24 00:28:00] Threads: 8
[2025-11-24 00:28:00] Checking for CVMFS
[2025-11-24 00:28:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:28:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:28:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:28:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:28:03] 2.11.2.0 17186 281714 140692 153226 1 264 17850041 25165824 4425 130560 6 140018263 99.887 75323943 3008 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 00:28:03] CVMFS is ok
[2025-11-24 00:28:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:28:03] Checking for apptainer binary...
[2025-11-24 00:28:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:28:03] Running /usr/bin/apptainer --version
[2025-11-24 00:28:03] apptainer version 1.3.2-1.el7
[2025-11-24 00:28:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:28:08] cg-vwn311.simple-grid.lan
[2025-11-24 00:28:08] apptainer works
[2025-11-24 00:28:08] Set ATHENA_PROC_NUMBER=8
[2025-11-24 00:28:08] Set ATHENA_CORE_NUMBER=8
[2025-11-24 00:28:09] Starting ATLAS job with PandaID=6893867585
[2025-11-24 00:28:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 23:13:44]  *** The last 200 lines of the pilot log: ***
[2025-11-24 23:13:44] 2025-11-24 22:12:22,988 | INFO     | PID=1459 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 23:13:44] 2025-11-24 22:12:22,988 | INFO     | .. there are 9 such processes running
[2025-11-24 23:13:44] 2025-11-24 22:12:23,989 | INFO     | time since job start (81671s) is within the limit (172800.0s)
[2025-11-24 23:13:44] 2025-11-24 22:12:24,656 | INFO     | monitor loop #5462: job 0:6893867585 is in state 'finished'
[2025-11-24 23:13:44] 2025-11-24 22:12:24,656 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:13:44] 2025-11-24 22:12:25,999 | INFO     | time since job start (81673s) is within the limit (172800.0s)
[2025-11-24 23:13:44] 2025-11-24 22:12:27,161 | INFO     | monitor loop #5463: job 0:6893867585 is in state 'finished'
[2025-11-24 23:13:44] 2025-11-24 22:12:27,161 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:13:44] 2025-11-24 22:12:28,005 | INFO     | time since job start (81676s) is within the limit (172800.0s)
[2025-11-24 23:13:44] 2025-11-24 22:12:29,672 | INFO     | monitor loop #5464: job 0:6893867585 is in state 'finished'
[2025-11-24 23:13:44] 2025-11-24 22:12:29,672 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:13:44] 2025-11-24 22:12:30,013 | INFO     | time since job start (81678s) is within the limit (172800.0s)
[2025-11-24 23:13:44] 2025-11-24 22:12:32,023 | INFO     | time since job start (81680s) is within the limit (172800.0s)
[2025-11-24 23:13:44] 2025-11-24 22:12:32,180 | INFO     | monitor loop #5465: job 0:6893867585 is in state 'finished'
[2025-11-24 23:13:44] 2025-11-24 22:12:32,180 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:13:44] 2025-11-24 22:12:33,405 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 23:13:44] 2025-11-24 22:12:33,406 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 23:13:44] 2025-11-24 22:12:33,408 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6893867585/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 23:13:44] 2025-11-24 22:12:33,410 | INFO     | extracted standard info from prmon json
[2025-11-24 23:13:44] 2025-11-24 22:12:33,410 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 23:13:44] 2025-11-24 22:12:33,410 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 23:13:44] 2025-11-24 22:12:33,438 | INFO     | fitting pss+swap vs Time
[2025-11-24 23:13:44] 2025-11-24 22:12:33,440 | INFO     | sum of square deviations: 729509588916.4877
[2025-11-24 23:13:44] 2025-11-24 22:12:33,495 | INFO     | sum of deviations: 3050219165809.0137
[2025-11-24 23:13:44] 2025-11-24 22:12:33,496 | INFO     | mean x: 1763981704.5030074
[2025-11-24 23:13:44] 2025-11-24 22:12:33,496 | INFO     | mean y: 2827494.9969924814
[2025-11-24 23:13:44] 2025-11-24 22:12:33,496 | INFO     | intersect: -7372717508.0550165
[2025-11-24 23:13:44] 2025-11-24 22:12:33,498 | INFO     | chi2: 24.134745450109694
[2025-11-24 23:13:44] 2025-11-24 22:12:33,500 | INFO     | sum of square deviations: 721313293258.939
[2025-11-24 23:13:44] 2025-11-24 22:12:33,554 | INFO     | sum of deviations: 3484540947137.85
[2025-11-24 23:13:44] 2025-11-24 22:12:33,554 | INFO     | mean x: 1763981552.0067925
[2025-11-24 23:13:44] 2025-11-24 22:12:33,554 | INFO     | mean y: 2835574.0166037735
[2025-11-24 23:13:44] 2025-11-24 22:12:33,555 | INFO     | intersect: -8518657105.2495985
[2025-11-24 23:13:44] 2025-11-24 22:12:33,556 | INFO     | chi2: 20.927768190266523
[2025-11-24 23:13:44] 2025-11-24 22:12:33,557 | INFO     | current chi2=20.927768190266523 (change=13.287802295128806 %)
[2025-11-24 23:13:44] 2025-11-24 22:12:33,557 | INFO     | right removable region: 1324
[2025-11-24 23:13:44] 2025-11-24 22:12:33,559 | INFO     | sum of square deviations: 721312479518.9388
[2025-11-24 23:13:44] 2025-11-24 22:12:33,610 | INFO     | sum of deviations: 2495958199630.2573
[2025-11-24 23:13:44] 2025-11-24 22:12:33,610 | INFO     | mean x: 1763981857.0067925
[2025-11-24 23:13:44] 2025-11-24 22:12:33,610 | INFO     | mean y: 2837805.9720754717
[2025-11-24 23:13:44] 2025-11-24 22:12:33,610 | INFO     | intersect: -6101070146.55838
[2025-11-24 23:13:44] 2025-11-24 22:12:33,612 | INFO     | chi2: 19.450683352062175
[2025-11-24 23:13:44] 2025-11-24 22:12:33,612 | INFO     | current chi2=19.450683352062175 (change=19.407961470860386 %)
[2025-11-24 23:13:44] 2025-11-24 22:12:33,613 | INFO     | left removable region: 10
[2025-11-24 23:13:44] 2025-11-24 22:12:33,615 | INFO     | sum of square deviations: 703496422184.1932
[2025-11-24 23:13:44] 2025-11-24 22:12:33,671 | INFO     | sum of deviations: 2576681868710.084
[2025-11-24 23:13:44] 2025-11-24 22:12:33,671 | INFO     | mean x: 1763981826.5152206
[2025-11-24 23:13:44] 2025-11-24 22:12:33,672 | INFO     | mean y: 2856080.3706240486
[2025-11-24 23:13:44] 2025-11-24 22:12:33,672 | INFO     | intersect: -6458043855.700142
[2025-11-24 23:13:44] 2025-11-24 22:12:33,673 | INFO     | chi2: 12.606482498344228
[2025-11-24 23:13:44] 2025-11-24 22:12:33,674 | INFO     | current memory leak: 3.66 B/s (using 1314 data points, chi2=12.61)
[2025-11-24 23:13:44] 2025-11-24 22:12:33,675 | INFO     | could have reported an average CPU frequency of 1999 MHz (45 samples)
[2025-11-24 23:13:44] 2025-11-24 22:12:33,676 | INFO     | ..............................
[2025-11-24 23:13:44] 2025-11-24 22:12:33,676 | INFO     | . Timing measurements:
[2025-11-24 23:13:44] 2025-11-24 22:12:33,676 | INFO     | . get job = 0 s
[2025-11-24 23:13:44] 2025-11-24 22:12:33,676 | INFO     | . initial setup = 3 s
[2025-11-24 23:13:44] 2025-11-24 22:12:33,676 | INFO     | . payload setup = 148 s
[2025-11-24 23:13:44] 2025-11-24 22:12:33,676 | INFO     | . stage-in = 0 s
[2025-11-24 23:13:44] 2025-11-24 22:12:33,676 | INFO     | . payload execution = 81237 s
[2025-11-24 23:13:44] 2025-11-24 22:12:33,677 | INFO     | . stage-out = 6 s
[2025-11-24 23:13:44] 2025-11-24 22:12:33,677 | INFO     | . log creation = 2 s
[2025-11-24 23:13:44] 2025-11-24 22:12:33,677 | INFO     | ..............................
[2025-11-24 23:13:44] 2025-11-24 22:12:33,814 | INFO     | 
[2025-11-24 23:13:44] 2025-11-24 22:12:33,814 | INFO     | job summary report
[2025-11-24 23:13:44] 2025-11-24 22:12:33,814 | INFO     | --------------------------------------------------
[2025-11-24 23:13:44] 2025-11-24 22:12:33,814 | INFO     | PanDA job id: 6893867585
[2025-11-24 23:13:44] 2025-11-24 22:12:33,815 | INFO     | task id: 47523449
[2025-11-24 23:13:44] 2025-11-24 22:12:33,815 | INFO     | errors: (none)
[2025-11-24 23:13:44] 2025-11-24 22:12:33,815 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 23:13:44] 2025-11-24 22:12:33,815 | INFO     | pilot state: finished 
[2025-11-24 23:13:44] 2025-11-24 22:12:33,815 | INFO     | transexitcode: 0
[2025-11-24 23:13:44] 2025-11-24 22:12:33,815 | INFO     | exeerrorcode: 0
[2025-11-24 23:13:44] 2025-11-24 22:12:33,815 | INFO     | exeerrordiag: 
[2025-11-24 23:13:44] 2025-11-24 22:12:33,815 | INFO     | exitcode: 0
[2025-11-24 23:13:44] 2025-11-24 22:12:33,815 | INFO     | exitmsg: OK
[2025-11-24 23:13:44] 2025-11-24 22:12:33,815 | INFO     | cpuconsumptiontime: 340826 s
[2025-11-24 23:13:44] 2025-11-24 22:12:33,815 | INFO     | nevents: 1000
[2025-11-24 23:13:44] 2025-11-24 22:12:33,816 | INFO     | neventsw: 0
[2025-11-24 23:13:44] 2025-11-24 22:12:33,816 | INFO     | pid: 8008
[2025-11-24 23:13:44] 2025-11-24 22:12:33,816 | INFO     | pgrp: 8008
[2025-11-24 23:13:44] 2025-11-24 22:12:33,816 | INFO     | corecount: 8
[2025-11-24 23:13:44] 2025-11-24 22:12:33,816 | INFO     | event service: False
[2025-11-24 23:13:44] 2025-11-24 22:12:33,816 | INFO     | sizes: {0: 2298637, 1: 2298836, 12: 2298836, 23: 2298864, 34: 2298892, 44: 2298920, 55: 2299076, 66: 2299104, 77: 2299132, 88: 2299450, 98: 2299478, 81387: 2359274
[2025-11-24 23:13:44] 2025-11-24 22:12:33,816 | INFO     | --------------------------------------------------
[2025-11-24 23:13:44] 2025-11-24 22:12:33,816 | INFO     | 
[2025-11-24 23:13:44] 2025-11-24 22:12:33,817 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-11-24 23:13:44] 2025-11-24 22:12:34,032 | INFO     | time since job start (81682s) is within the limit (172800.0s)
[2025-11-24 23:13:44] 2025-11-24 22:12:34,239 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 23:13:44] 2025-11-24 22:12:34,239 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 23:13:44] 2025-11-24 22:12:34,239 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 23:13:44] 2025-11-24 22:12:34,239 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 23:13:44] 2025-11-24 22:12:34,239 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 23:13:44] 2025-11-24 22:12:34,239 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 23:13:44] 2025-11-24 22:12:34,239 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 23:13:44] 2025-11-24 22:12:34,240 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 23:13:44] 2025-11-24 22:12:34,240 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 23:13:44] 2025-11-24 22:12:34,240 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 23:13:44] 2025-11-24 22:12:34,240 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 23:13:44] 2025-11-24 22:12:34,240 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 23:13:44] 2025-11-24 22:12:34,240 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 23:13:44] 2025-11-24 22:12:34,240 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 23:13:44] 2025-11-24 22:12:34,240 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 23:13:44] 2025-11-24 22:12:34,240 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 23:13:44] 2025-11-24 22:12:34,241 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 23:13:44] 2025-11-24 22:12:34,241 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 23:13:44] 2025-11-24 22:12:34,241 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 23:13:44] 2025-11-24 22:12:34,241 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 23:13:44] 2025-11-24 22:12:34,241 | INFO     | job 6893867585 has completed (purged errors)
[2025-11-24 23:13:44] 2025-11-24 22:12:34,241 | INFO     | overall cleanup function is called
[2025-11-24 23:13:44] 2025-11-24 22:12:35,265 | INFO     | --- collectZombieJob: --- 10, [8008]
[2025-11-24 23:13:44] 2025-11-24 22:12:35,265 | INFO     | zombie collector waiting for pid 8008
[2025-11-24 23:13:44] 2025-11-24 22:12:35,266 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 23:13:44] 2025-11-24 22:12:35,266 | INFO     | collected zombie processes
[2025-11-24 23:13:44] 2025-11-24 22:12:35,266 | INFO     | will attempt to kill all subprocesses of pid=8008
[2025-11-24 23:13:44] 2025-11-24 22:12:35,432 | INFO     | process IDs to be killed: [8008] (in reverse order)
[2025-11-24 23:13:44] 2025-11-24 22:12:36,381 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 23:13:44] 2025-11-24 22:12:36,381 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 23:13:44] 2025-11-24 22:12:36,385 | INFO     | did not find any defunct processes belonging to 8008
[2025-11-24 23:13:44] 2025-11-24 22:12:36,388 | INFO     | did not find any defunct processes belonging to 8008
[2025-11-24 23:13:44] 2025-11-24 22:12:36,436 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 23:13:44] 2025-11-24 22:12:36,437 | INFO     | ready for new job
[2025-11-24 23:13:44] 2025-11-24 22:12:36,437 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 23:13:44] 2025-11-24 22:12:36,443 | INFO     | ***************************************
[2025-11-24 23:13:44] 2025-11-24 22:12:36,444 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 23:13:44] 2025-11-24 22:12:36,444 | INFO     | ***************************************
[2025-11-24 23:13:44] 2025-11-24 22:12:36,444 | INFO     | 
[2025-11-24 23:13:44] 2025-11-24 22:12:36,445 | INFO     | pilot is running in a VM
[2025-11-24 23:13:44] 2025-11-24 22:12:36,445 | INFO     | architecture information:
[2025-11-24 23:13:44] 2025-11-24 22:12:36,452 | INFO     | executing command: cat /etc/os-release
[2025-11-24 23:13:44] 2025-11-24 22:12:36,724 | INFO     | cat /etc/os-release:
[2025-11-24 23:13:44] NAME="CentOS Linux"
[2025-11-24 23:13:44] VERSION="7 (Core)"
[2025-11-24 23:13:44] ID="centos"
[2025-11-24 23:13:44] ID_LIKE="rhel fedora"
[2025-11-24 23:13:44] VERSION_ID="7"
[2025-11-24 23:13:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 23:13:44] ANSI_COLOR="0;31"
[2025-11-24 23:13:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 23:13:44] HOME_URL="https://www.centos.org/"
[2025-11-24 23:13:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 23:13:44] 
[2025-11-24 23:13:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 23:13:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 23:13:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 23:13:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 23:13:44] 
[2025-11-24 23:13:44] 2025-11-24 22:12:36,725 | INFO     | ***************************************
[2025-11-24 23:13:44] 2025-11-24 22:12:37,227 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-11-24 23:13:44] 2025-11-24 22:12:37,404 | INFO     | sufficient remaining disk space (494892220416 B)
[2025-11-24 23:13:44] 2025-11-24 22:12:37,404 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 23:13:44] 2025-11-24 22:12:37,404 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 23:13:44] 2025-11-24 22:12:37,404 | INFO     | update_server=False
[2025-11-24 23:13:44] 2025-11-24 22:12:37,405 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 23:13:44] 2025-11-24 22:12:37,411 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 23:13:44] 2025-11-24 22:12:37,556 | INFO     | all data control threads have been joined
[2025-11-24 23:13:44] 2025-11-24 22:12:38,208 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:13:44] 2025-11-24 22:12:38,208 | INFO     | aborting loop
[2025-11-24 23:13:44] 2025-11-24 22:12:38,410 | INFO     | [job] retrieve thread has finished
[2025-11-24 23:13:44] 2025-11-24 22:12:38,506 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 23:13:44] 2025-11-24 22:12:38,562 | INFO     | [data] control thread has finished
[2025-11-24 23:13:44] 2025-11-24 22:12:38,643 | INFO     | all payload control threads have been joined
[2025-11-24 23:13:44] 2025-11-24 22:12:38,720 | INFO     | [job] validate thread has finished
[2025-11-24 23:13:44] 2025-11-24 22:12:38,765 | INFO     | [data] copytool_in thread has finished
[2025-11-24 23:13:44] 2025-11-24 22:12:38,828 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:13:44] 2025-11-24 22:12:38,900 | INFO     | all job control threads have been joined
[2025-11-24 23:13:44] 2025-11-24 22:12:39,003 | INFO     | [payload] validate_post thread has finished
[2025-11-24 23:13:44] 2025-11-24 22:12:39,070 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 23:13:44] 2025-11-24 22:12:39,168 | INFO     | [payload] failed_post thread has finished
[2025-11-24 23:13:44] 2025-11-24 22:12:39,214 | INFO     | [job] job monitor thread has finished
[2025-11-24 23:13:44] 2025-11-24 22:12:39,365 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 23:13:44] 2025-11-24 22:12:39,418 | INFO     | [data] copytool_out thread has finished
[2025-11-24 23:13:44] 2025-11-24 22:12:39,495 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 23:13:44] 2025-11-24 22:12:39,649 | INFO     | [payload] control thread has finished
[2025-11-24 23:13:44] 2025-11-24 22:12:39,775 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 23:13:44] 2025-11-24 22:12:39,834 | INFO     | [job] queue monitor thread has finished
[2025-11-24 23:13:44] 2025-11-24 22:12:39,906 | INFO     | [job] control thread has finished
[2025-11-24 23:13:44] 2025-11-24 22:12:42,515 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 23:13:44] 2025-11-24 22:13:07,202 | INFO     | PID=1459 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 23:13:44] 2025-11-24 22:13:07,203 | INFO     | .. there are 9 such processes running
[2025-11-24 23:13:44] 2025-11-24 22:13:07,204 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 23:13:44] 2025-11-24 22:13:07,204 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 23:13:44] 2025-11-24 22:13:07,204 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 23:13:44] 2025-11-24 22:13:33,684 | INFO     | [monitor] cgroup control has ended
[2025-11-24 23:13:44] 2025-11-24 22:13:35,215 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140205360658240)>', '<ExcThread(monitor, started 140205063378688)>']
[2025-11-24 23:13:44] 2025-11-24 22:13:35,368 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 23:13:44] 2025-11-24 22:13:35,368 | INFO     | [monitor] control thread has ended
[2025-11-24 23:13:44] 2025-11-24 22:13:40,241 | INFO     | all workflow threads have been joined
[2025-11-24 23:13:44] 2025-11-24 22:13:40,241 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 23:13:44] 2025-11-24 22:13:40,242 | INFO     | traces error code: 0
[2025-11-24 23:13:44] 2025-11-24 22:13:40,242 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 23:13:44] 2025-11-24 22:13:40,647 [wrapper] ==== pilot stdout END ====
[2025-11-24 23:13:44] 2025-11-24 22:13:40,735 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 23:13:44] 2025-11-24 22:13:40,843 [wrapper] pilotpid: 1459
[2025-11-24 23:13:44] 2025-11-24 22:13:40,899 [wrapper] Pilot exit status: 0
[2025-11-24 23:13:44] 2025-11-24 22:13:41,364 [wrapper] pandaids: 6893867585
[2025-11-24 23:13:44] 2025-11-24 22:13:42,456 [wrapper] cleanup supervisor_pilot 27328 1460
[2025-11-24 23:13:44] 2025-11-24 22:13:42,562 [wrapper] Test setup, not cleaning
[2025-11-24 23:13:44] 2025-11-24 22:13:42,628 [wrapper] apfmon messages muted
[2025-11-24 23:13:44] 2025-11-24 22:13:42,756 [wrapper] ==== wrapper stdout END ====
[2025-11-24 23:13:44] 2025-11-24 22:13:42,857 [wrapper] ==== wrapper stderr END ====
[2025-11-24 23:13:44]  *** Error codes and diagnostics ***
[2025-11-24 23:13:44]     "exeErrorCode": 0,
[2025-11-24 23:13:44]     "exeErrorDiag": "",
[2025-11-24 23:13:44]     "pilotErrorCode": 0,
[2025-11-24 23:13:44]     "pilotErrorDiag": "",
[2025-11-24 23:13:44]  *** Listing of results directory ***
[2025-11-24 23:13:44] total 1332820
[2025-11-24 23:13:44] -rw-r--r--. 1 boinc boinc    576529 Nov 20 15:06 pilot3.tar.gz
[2025-11-24 23:13:44] -rwx------. 1 boinc boinc     36292 Nov 20 15:36 runpilot2-wrapper.sh
[2025-11-24 23:13:44] -rw-r--r--. 1 boinc boinc      5112 Nov 20 15:36 queuedata.json
[2025-11-24 23:13:44] -rw-r--r--. 1 boinc boinc       100 Nov 24 00:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 23:13:44] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 00:27 run_atlas
[2025-11-24 23:13:44] -rw-r--r--. 1 boinc boinc       105 Nov 24 00:27 job.xml
[2025-11-24 23:13:44] -rw-r--r--. 2 boinc boinc 410900020 Nov 24 00:28 EVNT.47493127._000624.pool.root.1
[2025-11-24 23:13:44] -rw-r--r--. 1 boinc boinc      6390 Nov 24 00:28 init_data.xml
[2025-11-24 23:13:44] -rw-r--r--. 2 boinc boinc     15847 Nov 24 00:28 start_atlas.sh
[2025-11-24 23:13:44] drwxrwx--x. 2 boinc boinc        68 Nov 24 00:28 shared
[2025-11-24 23:13:44] -rw-r--r--. 2 boinc boinc    590090 Nov 24 00:28 input.tar.gz
[2025-11-24 23:13:44] -rw-r--r--. 1 boinc boinc         0 Nov 24 00:28 boinc_lockfile
[2025-11-24 23:13:44] -rw-r--r--. 1 boinc boinc      2786 Nov 24 00:28 pandaJob.out
[2025-11-24 23:13:44] -rw-------. 1 boinc boinc    989786 Nov 24 00:31 agis_schedconf.cvmfs.json
[2025-11-24 23:13:44] drwx------. 5 boinc boinc      4096 Nov 24 00:31 pilot3
[2025-11-24 23:13:44] -rw-r--r--. 1 boinc boinc       533 Nov 24 22:43 boinc_task_state.xml
[2025-11-24 23:13:44] -rw-------. 1 boinc boinc 923441552 Nov 24 23:09 HITS.47523449._006232.pool.root.1
[2025-11-24 23:13:44] -rw-------. 1 boinc boinc      1030 Nov 24 23:10 memory_monitor_summary.json
[2025-11-24 23:13:44] -rw-------. 1 boinc boinc   1516227 Nov 24 23:10 agis_ddmendpoints.agis.ALL.json
[2025-11-24 23:13:44] -rw-------. 1 boinc boinc   2440158 Nov 24 23:10 log.47523449._006232.job.log.tgz.1
[2025-11-24 23:13:44] -rw-------. 1 boinc boinc      8628 Nov 24 23:12 heartbeat.json
[2025-11-24 23:13:44] -rw-------. 1 boinc boinc        95 Nov 24 23:13 pilot_heartbeat.json
[2025-11-24 23:13:44] -rw-r--r--. 1 boinc boinc      8192 Nov 24 23:13 boinc_mmap_file
[2025-11-24 23:13:44] -rw-r--r--. 1 boinc boinc        29 Nov 24 23:13 wrapper_checkpoint.txt
[2025-11-24 23:13:44] -rw-------. 1 boinc boinc      4884 Nov 24 23:13 pilotlog.txt
[2025-11-24 23:13:44] -rw-------. 1 boinc boinc  10840077 Nov 24 23:13 log.47523449._006232.job.log.1
[2025-11-24 23:13:44] -rw-------. 1 boinc boinc       353 Nov 24 23:13 output.list
[2025-11-24 23:13:44] -rw-r--r--. 1 boinc boinc       620 Nov 24 23:13 runtime_log
[2025-11-24 23:13:44] -rw-------. 1 boinc boinc  13301760 Nov 24 23:13 result.tar.gz
[2025-11-24 23:13:44] -rw-------. 1 boinc boinc       662 Nov 24 23:13 YWuLDmWxKg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmXoGKDmZaA2To.diag
[2025-11-24 23:13:44] -rw-r--r--. 1 boinc boinc      8833 Nov 24 23:13 runtime_log.err
[2025-11-24 23:13:44] -rw-r--r--. 1 boinc boinc     21503 Nov 24 23:13 stderr.txt
[2025-11-24 23:13:45] HITS file was successfully produced:
[2025-11-24 23:13:45] -rw-------. 1 boinc boinc 923441552 Nov 24 23:09 shared/HITS.pool.root.1
[2025-11-24 23:13:45]  *** Contents of shared directory: ***
[2025-11-24 23:13:45] total 1316660
[2025-11-24 23:13:45] -rw-r--r--. 2 boinc boinc 410900020 Nov 24 00:28 ATLAS.root_0
[2025-11-24 23:13:45] -rw-r--r--. 2 boinc boinc     15847 Nov 24 00:28 start_atlas.sh
[2025-11-24 23:13:45] -rw-r--r--. 2 boinc boinc    590090 Nov 24 00:28 input.tar.gz
[2025-11-24 23:13:45] -rw-------. 1 boinc boinc 923441552 Nov 24 23:09 HITS.pool.root.1
[2025-11-24 23:13:45] -rw-------. 1 boinc boinc  13301760 Nov 24 23:13 result.tar.gz
23:13:46 (30041): run_atlas exited; CPU time 341387.421375
23:13:46 (30041): called boinc_finish(0)

</stderr_txt>
]]>

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