Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:57:41 (25242): wrapper (7.7.26015): starting
01:57:41 (25242): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 01:57:41] Arguments: --nthreads 8
[2025-11-24 01:57:41] Threads: 8
[2025-11-24 01:57:41] Checking for CVMFS
[2025-11-24 01:57:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 01:57:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 01:57:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 01:57:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 01:57:44] 2.11.2.0 2281 168605 135604 153227 2 128 14734320 25165825 4296 130560 2 54884996 99.897 26045638 2387 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 01:57:44] CVMFS is ok
[2025-11-24 01:57:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 01:57:44] Checking for apptainer binary...
[2025-11-24 01:57:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 01:57:44] Running /usr/bin/apptainer --version
[2025-11-24 01:57:44] apptainer version 1.3.2-1.el7
[2025-11-24 01:57:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 01:57:49] cg-vwn445.simple-grid.lan
[2025-11-24 01:57:49] apptainer works
[2025-11-24 01:57:49] Set ATHENA_PROC_NUMBER=8
[2025-11-24 01:57:49] Set ATHENA_CORE_NUMBER=8
[2025-11-24 01:57:49] Starting ATLAS job with PandaID=6893864417
[2025-11-24 01:57:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 00:01:36]  *** The last 200 lines of the pilot log: ***
[2025-11-25 00:01:36] 2025-11-24 23:00:46,667 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:01:36] 2025-11-24 23:00:47,172 | INFO     | time since job start (79141s) is within the limit (172800.0s)
[2025-11-25 00:01:36] 2025-11-24 23:00:49,175 | INFO     | monitor loop #5331: job 0:6893864417 is in state 'finished'
[2025-11-25 00:01:36] 2025-11-24 23:00:49,175 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:01:36] 2025-11-24 23:00:49,179 | INFO     | time since job start (79143s) is within the limit (172800.0s)
[2025-11-25 00:01:36] 2025-11-24 23:00:51,187 | INFO     | time since job start (79145s) is within the limit (172800.0s)
[2025-11-25 00:01:36] 2025-11-24 23:00:51,682 | INFO     | monitor loop #5332: job 0:6893864417 is in state 'finished'
[2025-11-25 00:01:36] 2025-11-24 23:00:51,682 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:01:36] 2025-11-24 23:00:53,194 | INFO     | time since job start (79147s) is within the limit (172800.0s)
[2025-11-25 00:01:36] 2025-11-24 23:00:54,188 | INFO     | monitor loop #5333: job 0:6893864417 is in state 'finished'
[2025-11-25 00:01:36] 2025-11-24 23:00:54,188 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:01:36] 2025-11-24 23:00:55,202 | INFO     | time since job start (79149s) is within the limit (172800.0s)
[2025-11-25 00:01:36] 2025-11-24 23:00:56,694 | INFO     | monitor loop #5334: job 0:6893864417 is in state 'finished'
[2025-11-25 00:01:36] 2025-11-24 23:00:56,694 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:01:36] 2025-11-24 23:00:57,209 | INFO     | time since job start (79151s) is within the limit (172800.0s)
[2025-11-25 00:01:36] 2025-11-24 23:00:58,102 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 00:01:36] 2025-11-24 23:00:58,103 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 00:01:36] 2025-11-24 23:00:58,105 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6893864417/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 00:01:36] 2025-11-24 23:00:58,106 | INFO     | extracted standard info from prmon json
[2025-11-25 00:01:36] 2025-11-24 23:00:58,106 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 00:01:36] 2025-11-24 23:00:58,106 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 00:01:36] 2025-11-24 23:00:58,130 | INFO     | fitting pss+swap vs Time
[2025-11-25 00:01:36] 2025-11-24 23:00:58,132 | INFO     | sum of square deviations: 661017639531.7683
[2025-11-25 00:01:36] 2025-11-24 23:00:58,179 | INFO     | sum of deviations: 2250981277453.6655
[2025-11-25 00:01:36] 2025-11-24 23:00:58,179 | INFO     | mean x: 1763985862.0846932
[2025-11-25 00:01:36] 2025-11-24 23:00:58,179 | INFO     | mean y: 2819581.48018648
[2025-11-25 00:01:36] 2025-11-24 23:00:58,179 | INFO     | intersect: -6004129267.960884
[2025-11-25 00:01:36] 2025-11-24 23:00:58,181 | INFO     | chi2: 31.381581123960895
[2025-11-25 00:01:36] 2025-11-24 23:00:58,183 | INFO     | sum of square deviations: 653343772578.3633
[2025-11-25 00:01:36] 2025-11-24 23:00:58,247 | INFO     | sum of deviations: 2669825870849.3438
[2025-11-25 00:01:36] 2025-11-24 23:00:58,248 | INFO     | mean x: 1763985709.5889235
[2025-11-25 00:01:36] 2025-11-24 23:00:58,248 | INFO     | mean y: 2827903.88299532
[2025-11-25 00:01:36] 2025-11-24 23:00:58,248 | INFO     | intersect: -7205528371.838871
[2025-11-25 00:01:36] 2025-11-24 23:00:58,250 | INFO     | chi2: 28.088038229651662
[2025-11-25 00:01:36] 2025-11-24 23:00:58,250 | INFO     | current chi2=28.088038229651662 (change=10.49514644051667 %)
[2025-11-25 00:01:36] 2025-11-24 23:00:58,250 | INFO     | right removable region: 1281
[2025-11-25 00:01:36] 2025-11-24 23:00:58,256 | INFO     | sum of square deviations: 653342921018.3633
[2025-11-25 00:01:36] 2025-11-24 23:00:58,316 | INFO     | sum of deviations: 1709585885748.1733
[2025-11-25 00:01:36] 2025-11-24 23:00:58,316 | INFO     | mean x: 1763986014.5889235
[2025-11-25 00:01:36] 2025-11-24 23:00:58,316 | INFO     | mean y: 2830339.011700468
[2025-11-25 00:01:36] 2025-11-24 23:00:58,316 | INFO     | intersect: -4612947220.034714
[2025-11-25 00:01:36] 2025-11-24 23:00:58,318 | INFO     | chi2: 26.602955534303536
[2025-11-25 00:01:36] 2025-11-24 23:00:58,318 | INFO     | current chi2=26.602955534303536 (change=15.227485099559617 %)
[2025-11-25 00:01:36] 2025-11-24 23:00:58,318 | INFO     | left removable region: 10
[2025-11-25 00:01:36] 2025-11-24 23:00:58,320 | INFO     | sum of square deviations: 636669128880.7084
[2025-11-25 00:01:36] 2025-11-24 23:00:58,366 | INFO     | sum of deviations: 1740978067832.5122
[2025-11-25 00:01:36] 2025-11-24 23:00:58,366 | INFO     | mean x: 1763985984.0983477
[2025-11-25 00:01:36] 2025-11-24 23:00:58,366 | INFO     | mean y: 2850233.9559402047
[2025-11-25 00:01:36] 2025-11-24 23:00:58,366 | INFO     | intersect: -4820786991.361126
[2025-11-25 00:01:36] 2025-11-24 23:00:58,368 | INFO     | chi2: 18.87699506505615
[2025-11-25 00:01:36] 2025-11-24 23:00:58,368 | INFO     | current memory leak: 2.73 B/s (using 1271 data points, chi2=18.88)
[2025-11-25 00:01:36] 2025-11-24 23:00:58,370 | INFO     | could have reported an average CPU frequency of 1999 MHz (43 samples)
[2025-11-25 00:01:36] 2025-11-24 23:00:58,370 | INFO     | ..............................
[2025-11-25 00:01:36] 2025-11-24 23:00:58,370 | INFO     | . Timing measurements:
[2025-11-25 00:01:36] 2025-11-24 23:00:58,370 | INFO     | . get job = 0 s
[2025-11-25 00:01:36] 2025-11-24 23:00:58,370 | INFO     | . initial setup = 13 s
[2025-11-25 00:01:36] 2025-11-24 23:00:58,370 | INFO     | . payload setup = 168 s
[2025-11-25 00:01:36] 2025-11-24 23:00:58,370 | INFO     | . stage-in = 0 s
[2025-11-25 00:01:36] 2025-11-24 23:00:58,370 | INFO     | . payload execution = 78658 s
[2025-11-25 00:01:36] 2025-11-24 23:00:58,370 | INFO     | . stage-out = 5 s
[2025-11-25 00:01:36] 2025-11-24 23:00:58,371 | INFO     | . log creation = 2 s
[2025-11-25 00:01:36] 2025-11-24 23:00:58,371 | INFO     | ..............................
[2025-11-25 00:01:36] 2025-11-24 23:00:58,966 | INFO     | 
[2025-11-25 00:01:36] 2025-11-24 23:00:58,966 | INFO     | job summary report
[2025-11-25 00:01:36] 2025-11-24 23:00:58,966 | INFO     | --------------------------------------------------
[2025-11-25 00:01:36] 2025-11-24 23:00:58,967 | INFO     | PanDA job id: 6893864417
[2025-11-25 00:01:36] 2025-11-24 23:00:58,967 | INFO     | task id: 47523449
[2025-11-25 00:01:36] 2025-11-24 23:00:58,967 | INFO     | errors: (none)
[2025-11-25 00:01:36] 2025-11-24 23:00:58,967 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 00:01:36] 2025-11-24 23:00:58,967 | INFO     | pilot state: finished 
[2025-11-25 00:01:36] 2025-11-24 23:00:58,967 | INFO     | transexitcode: 0
[2025-11-25 00:01:36] 2025-11-24 23:00:58,967 | INFO     | exeerrorcode: 0
[2025-11-25 00:01:36] 2025-11-24 23:00:58,967 | INFO     | exeerrordiag: 
[2025-11-25 00:01:36] 2025-11-24 23:00:58,967 | INFO     | exitcode: 0
[2025-11-25 00:01:36] 2025-11-24 23:00:58,967 | INFO     | exitmsg: OK
[2025-11-25 00:01:36] 2025-11-24 23:00:58,968 | INFO     | cpuconsumptiontime: 339462 s
[2025-11-25 00:01:36] 2025-11-24 23:00:58,968 | INFO     | nevents: 1000
[2025-11-25 00:01:36] 2025-11-24 23:00:58,968 | INFO     | neventsw: 0
[2025-11-25 00:01:36] 2025-11-24 23:00:58,968 | INFO     | pid: 3248
[2025-11-25 00:01:36] 2025-11-24 23:00:58,968 | INFO     | pgrp: 3248
[2025-11-25 00:01:36] 2025-11-24 23:00:58,968 | INFO     | corecount: 8
[2025-11-25 00:01:36] 2025-11-24 23:00:58,968 | INFO     | event service: False
[2025-11-25 00:01:36] 2025-11-24 23:00:58,968 | INFO     | sizes: {0: 2298581, 1: 2298836, 2: 2298864, 12: 2298864, 23: 2298892, 34: 2298920, 45: 2299076, 56: 2299104, 66: 2299132, 77: 2299160, 88: 2299216, 99: 2299524, 10
[2025-11-25 00:01:36] 2025-11-24 23:00:58,968 | INFO     | --------------------------------------------------
[2025-11-25 00:01:36] 2025-11-24 23:00:58,968 | INFO     | 
[2025-11-25 00:01:36] 2025-11-24 23:00:58,969 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-11-25 00:01:36] 2025-11-24 23:00:59,229 | INFO     | time since job start (79153s) is within the limit (172800.0s)
[2025-11-25 00:01:36] 2025-11-24 23:00:59,520 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 00:01:36] 2025-11-24 23:00:59,521 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 00:01:36] 2025-11-24 23:00:59,521 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 00:01:36] 2025-11-24 23:00:59,521 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 00:01:36] 2025-11-24 23:00:59,521 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 00:01:36] 2025-11-24 23:00:59,521 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 00:01:36] 2025-11-24 23:00:59,521 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 00:01:36] 2025-11-24 23:00:59,521 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 00:01:36] 2025-11-24 23:00:59,522 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 00:01:36] 2025-11-24 23:00:59,522 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 00:01:36] 2025-11-24 23:00:59,522 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 00:01:36] 2025-11-24 23:00:59,522 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 00:01:36] 2025-11-24 23:00:59,522 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 00:01:36] 2025-11-24 23:00:59,522 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 00:01:36] 2025-11-24 23:00:59,522 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 00:01:36] 2025-11-24 23:00:59,522 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 00:01:36] 2025-11-24 23:00:59,522 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 00:01:36] 2025-11-24 23:00:59,523 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 00:01:36] 2025-11-24 23:00:59,523 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 00:01:36] 2025-11-24 23:00:59,523 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 00:01:36] 2025-11-24 23:00:59,523 | INFO     | job 6893864417 has completed (purged errors)
[2025-11-25 00:01:36] 2025-11-24 23:00:59,523 | INFO     | overall cleanup function is called
[2025-11-25 00:01:36] 2025-11-24 23:01:00,547 | INFO     | --- collectZombieJob: --- 10, [3248]
[2025-11-25 00:01:36] 2025-11-24 23:01:00,547 | INFO     | zombie collector waiting for pid 3248
[2025-11-25 00:01:36] 2025-11-24 23:01:00,547 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 00:01:36] 2025-11-24 23:01:00,548 | INFO     | collected zombie processes
[2025-11-25 00:01:36] 2025-11-24 23:01:00,548 | INFO     | will attempt to kill all subprocesses of pid=3248
[2025-11-25 00:01:36] 2025-11-24 23:01:00,645 | INFO     | process IDs to be killed: [3248] (in reverse order)
[2025-11-25 00:01:36] 2025-11-24 23:01:00,905 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 00:01:36] 2025-11-24 23:01:00,905 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 00:01:36] 2025-11-24 23:01:00,907 | INFO     | did not find any defunct processes belonging to 3248
[2025-11-25 00:01:36] 2025-11-24 23:01:00,909 | INFO     | did not find any defunct processes belonging to 3248
[2025-11-25 00:01:36] 2025-11-24 23:01:00,969 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 00:01:36] 2025-11-24 23:01:00,970 | INFO     | ready for new job
[2025-11-25 00:01:36] 2025-11-24 23:01:00,970 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 00:01:36] 2025-11-24 23:01:00,975 | INFO     | ***************************************
[2025-11-25 00:01:36] 2025-11-24 23:01:00,975 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 00:01:36] 2025-11-24 23:01:00,975 | INFO     | ***************************************
[2025-11-25 00:01:36] 2025-11-24 23:01:00,975 | INFO     | 
[2025-11-25 00:01:36] 2025-11-24 23:01:00,976 | INFO     | pilot is running in a VM
[2025-11-25 00:01:36] 2025-11-24 23:01:00,976 | INFO     | architecture information:
[2025-11-25 00:01:36] 2025-11-24 23:01:00,983 | INFO     | executing command: cat /etc/os-release
[2025-11-25 00:01:36] 2025-11-24 23:01:01,038 | INFO     | cat /etc/os-release:
[2025-11-25 00:01:36] NAME="CentOS Linux"
[2025-11-25 00:01:36] VERSION="7 (Core)"
[2025-11-25 00:01:36] ID="centos"
[2025-11-25 00:01:36] ID_LIKE="rhel fedora"
[2025-11-25 00:01:36] VERSION_ID="7"
[2025-11-25 00:01:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 00:01:36] ANSI_COLOR="0;31"
[2025-11-25 00:01:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 00:01:36] HOME_URL="https://www.centos.org/"
[2025-11-25 00:01:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 00:01:36] 
[2025-11-25 00:01:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 00:01:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 00:01:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 00:01:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 00:01:36] 
[2025-11-25 00:01:36] 2025-11-24 23:01:01,039 | INFO     | ***************************************
[2025-11-25 00:01:36] 2025-11-24 23:01:01,542 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-11-25 00:01:36] 2025-11-24 23:01:01,912 | INFO     | sufficient remaining disk space (493155778560 B)
[2025-11-25 00:01:36] 2025-11-24 23:01:01,912 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 00:01:36] 2025-11-24 23:01:01,913 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 00:01:36] 2025-11-24 23:01:01,913 | INFO     | update_server=False
[2025-11-25 00:01:36] 2025-11-24 23:01:01,913 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 00:01:36] 2025-11-24 23:01:02,710 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:01:36] 2025-11-24 23:01:02,710 | INFO     | aborting loop
[2025-11-25 00:01:36] 2025-11-24 23:01:02,776 | INFO     | all data control threads have been joined
[2025-11-25 00:01:36] 2025-11-24 23:01:02,919 | INFO     | [job] retrieve thread has finished
[2025-11-25 00:01:36] 2025-11-24 23:01:03,035 | INFO     | [monitor] cgroup control has ended
[2025-11-25 00:01:36] 2025-11-24 23:01:03,182 | INFO     | [payload] validate_post thread has finished
[2025-11-25 00:01:36] 2025-11-24 23:01:03,187 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 00:01:36] 2025-11-24 23:01:03,236 | INFO     | all job control threads have been joined
[2025-11-25 00:01:36] 2025-11-24 23:01:03,252 | INFO     | all payload control threads have been joined
[2025-11-25 00:01:36] 2025-11-24 23:01:03,313 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 00:01:36] 2025-11-24 23:01:03,497 | INFO     | [payload] failed_post thread has finished
[2025-11-25 00:01:36] 2025-11-24 23:01:03,502 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:01:36] 2025-11-24 23:01:03,556 | INFO     | [data] copytool_in thread has finished
[2025-11-25 00:01:36] 2025-11-24 23:01:03,598 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 00:01:36] 2025-11-24 23:01:03,716 | INFO     | [job] job monitor thread has finished
[2025-11-25 00:01:36] 2025-11-24 23:01:03,782 | INFO     | [data] control thread has finished
[2025-11-25 00:01:36] 2025-11-24 23:01:03,809 | INFO     | [job] validate thread has finished
[2025-11-25 00:01:36] 2025-11-24 23:01:03,861 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 00:01:36] 2025-11-24 23:01:04,070 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 00:01:36] 2025-11-24 23:01:04,242 | INFO     | [job] control thread has finished
[2025-11-25 00:01:36] 2025-11-24 23:01:04,258 | INFO     | [payload] control thread has finished
[2025-11-25 00:01:36] 2025-11-24 23:01:04,508 | INFO     | [job] queue monitor thread has finished
[2025-11-25 00:01:36] 2025-11-24 23:01:05,129 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 00:01:36] 2025-11-24 23:01:05,194 | INFO     | [data] copytool_out thread has finished
[2025-11-25 00:01:36] 2025-11-24 23:01:09,138 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 00:01:36] 2025-11-24 23:01:10,488 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140163278546752)>', '<ExcThread(monitor, started 140162692540160)>']
[2025-11-25 00:01:36] 2025-11-24 23:01:15,514 | INFO     | all workflow threads have been joined
[2025-11-25 00:01:36] 2025-11-24 23:01:15,514 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 00:01:36] 2025-11-24 23:01:15,515 | INFO     | traces error code: 0
[2025-11-25 00:01:36] 2025-11-24 23:01:15,515 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 00:01:36] 2025-11-24 23:01:32,334 | INFO     | PID=29053 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 00:01:36] 2025-11-24 23:01:32,334 | INFO     | .. there are 2 such processes running
[2025-11-25 00:01:36] 2025-11-24 23:01:32,335 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 00:01:36] 2025-11-24 23:01:32,335 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 00:01:36] 2025-11-24 23:01:32,335 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 00:01:36] 2025-11-24 23:01:32,335 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 00:01:36] 2025-11-24 23:01:32,335 | INFO     | [monitor] control thread has ended
[2025-11-25 00:01:36] 2025-11-24 23:01:32,678 [wrapper] ==== pilot stdout END ====
[2025-11-25 00:01:36] 2025-11-24 23:01:32,776 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 00:01:36] 2025-11-24 23:01:32,854 [wrapper] pilotpid: 29053
[2025-11-25 00:01:36] 2025-11-24 23:01:32,935 [wrapper] Pilot exit status: 0
[2025-11-25 00:01:36] 2025-11-24 23:01:33,243 [wrapper] pandaids: 6893864417
[2025-11-25 00:01:36] 2025-11-24 23:01:33,274 [wrapper] cleanup supervisor_pilot  6348 29054
[2025-11-25 00:01:36] 2025-11-24 23:01:33,277 [wrapper] Test setup, not cleaning
[2025-11-25 00:01:36] 2025-11-24 23:01:33,340 [wrapper] apfmon messages muted
[2025-11-25 00:01:36] 2025-11-24 23:01:33,459 [wrapper] ==== wrapper stdout END ====
[2025-11-25 00:01:36] 2025-11-24 23:01:33,555 [wrapper] ==== wrapper stderr END ====
[2025-11-25 00:01:36]  *** Error codes and diagnostics ***
[2025-11-25 00:01:36]     "exeErrorCode": 0,
[2025-11-25 00:01:36]     "exeErrorDiag": "",
[2025-11-25 00:01:36]     "pilotErrorCode": 0,
[2025-11-25 00:01:36]     "pilotErrorDiag": "",
[2025-11-25 00:01:36]  *** Listing of results directory ***
[2025-11-25 00:01:36] total 1321064
[2025-11-25 00:01:36] -rw-r--r--. 1 boinc boinc    576529 Nov 20 15:06 pilot3.tar.gz
[2025-11-25 00:01:36] -rw-r--r--. 1 boinc boinc      5112 Nov 20 15:26 queuedata.json
[2025-11-25 00:01:36] -rwx------. 1 boinc boinc     36292 Nov 20 15:26 runpilot2-wrapper.sh
[2025-11-25 00:01:36] -rw-r--r--. 1 boinc boinc       100 Nov 24 01:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 00:01:36] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 01:57 run_atlas
[2025-11-25 00:01:36] -rw-r--r--. 1 boinc boinc       105 Nov 24 01:57 job.xml
[2025-11-25 00:01:36] -rw-r--r--. 1 boinc boinc      6393 Nov 24 01:57 init_data.xml
[2025-11-25 00:01:36] -rw-r--r--. 2 boinc boinc 407292281 Nov 24 01:57 EVNT.47493127._000607.pool.root.1
[2025-11-25 00:01:36] -rw-r--r--. 2 boinc boinc     15847 Nov 24 01:57 start_atlas.sh
[2025-11-25 00:01:36] drwxrwx--x. 2 boinc boinc        68 Nov 24 01:57 shared
[2025-11-25 00:01:36] -rw-r--r--. 2 boinc boinc    590097 Nov 24 01:57 input.tar.gz
[2025-11-25 00:01:36] -rw-r--r--. 1 boinc boinc         0 Nov 24 01:57 boinc_lockfile
[2025-11-25 00:01:36] -rw-r--r--. 1 boinc boinc      2786 Nov 24 01:57 pandaJob.out
[2025-11-25 00:01:36] -rw-------. 1 boinc boinc    989786 Nov 24 02:01 agis_schedconf.cvmfs.json
[2025-11-25 00:01:36] drwx------. 5 boinc boinc      4096 Nov 24 02:01 pilot3
[2025-11-25 00:01:36] -rw-r--r--. 1 boinc boinc       533 Nov 24 23:28 boinc_task_state.xml
[2025-11-25 00:01:36] -rw-------. 1 boinc boinc 915670852 Nov 24 23:57 HITS.47523449._006062.pool.root.1
[2025-11-25 00:01:36] -rw-------. 1 boinc boinc      1032 Nov 24 23:59 memory_monitor_summary.json
[2025-11-25 00:01:36] -rw-------. 1 boinc boinc   1516227 Nov 24 23:59 agis_ddmendpoints.agis.ALL.json
[2025-11-25 00:01:36] -rw-------. 1 boinc boinc   2407096 Nov 24 23:59 log.47523449._006062.job.log.tgz.1
[2025-11-25 00:01:36] -rw-------. 1 boinc boinc        95 Nov 25 00:00 pilot_heartbeat.json
[2025-11-25 00:01:36] -rw-------. 1 boinc boinc      8629 Nov 25 00:00 heartbeat.json
[2025-11-25 00:01:36] -rw-r--r--. 1 boinc boinc      8192 Nov 25 00:01 boinc_mmap_file
[2025-11-25 00:01:36] -rw-r--r--. 1 boinc boinc        29 Nov 25 00:01 wrapper_checkpoint.txt
[2025-11-25 00:01:36] -rw-------. 1 boinc boinc       820 Nov 25 00:01 pilotlog.txt
[2025-11-25 00:01:36] -rw-------. 1 boinc boinc  10546564 Nov 25 00:01 log.47523449._006062.job.log.1
[2025-11-25 00:01:36] -rw-------. 1 boinc boinc       353 Nov 25 00:01 output.list
[2025-11-25 00:01:36] -rw-r--r--. 1 boinc boinc       620 Nov 25 00:01 runtime_log
[2025-11-25 00:01:36] -rw-------. 1 boinc boinc  12974080 Nov 25 00:01 result.tar.gz
[2025-11-25 00:01:36] -rw-r--r--. 1 boinc boinc      8833 Nov 25 00:01 runtime_log.err
[2025-11-25 00:01:36] -rw-------. 1 boinc boinc       662 Nov 25 00:01 lnlLDmSnKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmU4HKDmmSHism.diag
[2025-11-25 00:01:36] -rw-r--r--. 1 boinc boinc     21440 Nov 25 00:01 stderr.txt
[2025-11-25 00:01:36] HITS file was successfully produced:
[2025-11-25 00:01:36] -rw-------. 1 boinc boinc 915670852 Nov 24 23:57 shared/HITS.pool.root.1
[2025-11-25 00:01:36]  *** Contents of shared directory: ***
[2025-11-25 00:01:36] total 1305228
[2025-11-25 00:01:36] -rw-r--r--. 2 boinc boinc 407292281 Nov 24 01:57 ATLAS.root_0
[2025-11-25 00:01:36] -rw-r--r--. 2 boinc boinc     15847 Nov 24 01:57 start_atlas.sh
[2025-11-25 00:01:36] -rw-r--r--. 2 boinc boinc    590097 Nov 24 01:57 input.tar.gz
[2025-11-25 00:01:36] -rw-------. 1 boinc boinc 915670852 Nov 24 23:57 HITS.pool.root.1
[2025-11-25 00:01:36] -rw-------. 1 boinc boinc  12974080 Nov 25 00:01 result.tar.gz
00:01:38 (25242): run_atlas exited; CPU time 339725.884200
00:01:38 (25242): called boinc_finish(0)

</stderr_txt>
]]>

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