Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:11:27 (1148243): wrapper (7.7.26015): starting
03:11:27 (1148243): wrapper: running run_atlas (--nthreads 4)
[2025-11-27 03:11:27] Arguments: --nthreads 4
[2025-11-27 03:11:27] Threads: 4
[2025-11-27 03:11:27] Checking for CVMFS
[2025-11-27 03:11:27] No cvmfs_config command found, will try listing directly
[2025-11-27 03:11:27] CVMFS is ok
[2025-11-27 03:11:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 03:11:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 03:11:27] Further information can be found at the LHC@home message board.
[2025-11-27 03:11:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 03:11:27] Checking for apptainer binary...
[2025-11-27 03:11:27] which: no apptainer in ((null))
[2025-11-27 03:11:27] apptainer is not installed, using version from CVMFS
[2025-11-27 03:11:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 03:11:28] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-11-27 03:11:28] apptainer works
[2025-11-27 03:11:28] Set ATHENA_PROC_NUMBER=4
[2025-11-27 03:11:28] Set ATHENA_CORE_NUMBER=4
[2025-11-27 03:11:28] Starting ATLAS job with PandaID=6893867624
[2025-11-27 03:11:28] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 22:18:47]  *** The last 200 lines of the pilot log: ***
[2025-11-27 22:18:47] 2025-11-27 21:17:48,569 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:18:47] 2025-11-27 21:17:49,795 | INFO     | time since job start (68767s) is within the limit (172800.0s)
[2025-11-27 22:18:47] 2025-11-27 21:17:50,702 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 22:18:47] 2025-11-27 21:17:50,728 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 1995.9379687500007
[2025-11-27 22:18:47] 2025-11-27 21:17:50,761 | INFO     | using path: /scratch/boinc/var/slot116/slots/0/PanDA_Pilot-6893867624/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 22:18:47] 2025-11-27 21:17:50,762 | INFO     | extracted standard info from prmon json
[2025-11-27 22:18:47] 2025-11-27 21:17:50,762 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 22:18:47] 2025-11-27 21:17:50,762 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 22:18:47] 2025-11-27 21:17:50,785 | INFO     | fitting pss+swap vs Time
[2025-11-27 22:18:47] 2025-11-27 21:17:50,787 | INFO     | sum of square deviations: 443863630204.8922
[2025-11-27 22:18:47] 2025-11-27 21:17:50,828 | INFO     | sum of deviations: 718264205802.6709
[2025-11-27 22:18:47] 2025-11-27 21:17:50,828 | INFO     | mean x: 1764243880.0097604
[2025-11-27 22:18:47] 2025-11-27 21:17:50,828 | INFO     | mean y: 2286418.48447205
[2025-11-27 22:18:47] 2025-11-27 21:17:50,829 | INFO     | intersect: -2852629242.7344546
[2025-11-27 22:18:47] 2025-11-27 21:17:50,830 | INFO     | chi2: 5.090100542393292
[2025-11-27 22:18:47] 2025-11-27 21:17:50,832 | INFO     | sum of square deviations: 437982118632.3924
[2025-11-27 22:18:47] 2025-11-27 21:17:50,873 | INFO     | sum of deviations: 1017436364296.7263
[2025-11-27 22:18:47] 2025-11-27 21:17:50,873 | INFO     | mean x: 1764243727.509804
[2025-11-27 22:18:47] 2025-11-27 21:17:50,873 | INFO     | mean y: 2294175.7067736187
[2025-11-27 22:18:47] 2025-11-27 21:17:50,874 | INFO     | intersect: -4096059723.890359
[2025-11-27 22:18:47] 2025-11-27 21:17:50,875 | INFO     | chi2: 2.0678621007985685
[2025-11-27 22:18:47] 2025-11-27 21:17:50,875 | INFO     | current chi2=2.0678621007985685 (change=59.37482799060213 %)
[2025-11-27 22:18:47] 2025-11-27 21:17:50,877 | INFO     | sum of square deviations: 432152794084.8918
[2025-11-27 22:18:47] 2025-11-27 21:17:50,918 | INFO     | sum of deviations: 1064534520213.3973
[2025-11-27 22:18:47] 2025-11-27 21:17:50,918 | INFO     | mean x: 1764243575.0098479
[2025-11-27 22:18:47] 2025-11-27 21:17:50,918 | INFO     | mean y: 2295405.872873769
[2025-11-27 22:18:47] 2025-11-27 21:17:50,918 | INFO     | intersect: -4343616996.798635
[2025-11-27 22:18:47] 2025-11-27 21:17:50,920 | INFO     | chi2: 1.923393911042583
[2025-11-27 22:18:47] 2025-11-27 21:17:50,920 | INFO     | current chi2=1.923393911042583 (change=6.986355120111471 %)
[2025-11-27 22:18:47] 2025-11-27 21:17:50,920 | INFO     | right removable region: 1116
[2025-11-27 22:18:47] 2025-11-27 21:17:50,922 | INFO     | sum of square deviations: 437982111922.3924
[2025-11-27 22:18:47] 2025-11-27 21:17:50,966 | INFO     | sum of deviations: 527345496809.48987
[2025-11-27 22:18:47] 2025-11-27 21:17:50,967 | INFO     | mean x: 1764244032.509804
[2025-11-27 22:18:47] 2025-11-27 21:17:50,967 | INFO     | mean y: 2291359.637254902
[2025-11-27 22:18:47] 2025-11-27 21:17:50,967 | INFO     | intersect: -2121919014.465684
[2025-11-27 22:18:47] 2025-11-27 21:17:50,969 | INFO     | chi2: 3.2668881189331502
[2025-11-27 22:18:47] 2025-11-27 21:17:50,969 | INFO     | current chi2=3.2668881189331502 (change=35.818789988043996 %)
[2025-11-27 22:18:47] 2025-11-27 21:17:50,971 | INFO     | sum of square deviations: 432152780664.8917
[2025-11-27 22:18:47] 2025-11-27 21:17:51,012 | INFO     | sum of deviations: 505362776558.69995
[2025-11-27 22:18:47] 2025-11-27 21:17:51,012 | INFO     | mean x: 1764244185.0098479
[2025-11-27 22:18:47] 2025-11-27 21:17:51,012 | INFO     | mean y: 2291934.2999104746
[2025-11-27 22:18:47] 2025-11-27 21:17:51,012 | INFO     | intersect: -2060828748.3724668
[2025-11-27 22:18:47] 2025-11-27 21:17:51,014 | INFO     | chi2: 3.2598435259486322
[2025-11-27 22:18:47] 2025-11-27 21:17:51,014 | INFO     | current chi2=3.2598435259486322 (change=0.21563618734572695 %)
[2025-11-27 22:18:47] 2025-11-27 21:17:51,014 | INFO     | left removable region: 20
[2025-11-27 22:18:47] 2025-11-27 21:17:51,016 | INFO     | sum of square deviations: 408234237987.88806
[2025-11-27 22:18:47] 2025-11-27 21:17:51,051 | INFO     | sum of deviations: 829427523870.1807
[2025-11-27 22:18:47] 2025-11-27 21:17:51,051 | INFO     | mean x: 1764244154.5100365
[2025-11-27 22:18:47] 2025-11-27 21:17:51,051 | INFO     | mean y: 2301463.2107664235
[2025-11-27 22:18:47] 2025-11-27 21:17:51,052 | INFO     | intersect: -3582191272.6021347
[2025-11-27 22:18:47] 2025-11-27 21:17:51,053 | INFO     | chi2: 0.07549462827369317
[2025-11-27 22:18:47] 2025-11-27 21:17:51,053 | INFO     | current memory leak: 2.03 B/s (using 1096 data points, chi2=0.08)
[2025-11-27 22:18:47] 2025-11-27 21:17:51,055 | INFO     | could have reported an average CPU frequency of 2156 MHz (41 samples)
[2025-11-27 22:18:47] 2025-11-27 21:17:51,055 | INFO     | ..............................
[2025-11-27 22:18:47] 2025-11-27 21:17:51,055 | INFO     | . Timing measurements:
[2025-11-27 22:18:47] 2025-11-27 21:17:51,055 | INFO     | . get job = 0 s
[2025-11-27 22:18:47] 2025-11-27 21:17:51,056 | INFO     | . initial setup = 1 s
[2025-11-27 22:18:47] 2025-11-27 21:17:51,056 | INFO     | . payload setup = 9 s
[2025-11-27 22:18:47] 2025-11-27 21:17:51,056 | INFO     | . stage-in = 0 s
[2025-11-27 22:18:47] 2025-11-27 21:17:51,056 | INFO     | . payload execution = 68724 s
[2025-11-27 22:18:47] 2025-11-27 21:17:51,056 | INFO     | . stage-out = 3 s
[2025-11-27 22:18:47] 2025-11-27 21:17:51,056 | INFO     | . log creation = 1 s
[2025-11-27 22:18:47] 2025-11-27 21:17:51,056 | INFO     | ..............................
[2025-11-27 22:18:47] 2025-11-27 21:17:51,531 | INFO     | 
[2025-11-27 22:18:47] 2025-11-27 21:17:51,531 | INFO     | job summary report
[2025-11-27 22:18:47] 2025-11-27 21:17:51,531 | INFO     | --------------------------------------------------
[2025-11-27 22:18:47] 2025-11-27 21:17:51,531 | INFO     | PanDA job id: 6893867624
[2025-11-27 22:18:47] 2025-11-27 21:17:51,532 | INFO     | task id: 47523449
[2025-11-27 22:18:47] 2025-11-27 21:17:51,532 | INFO     | errors: (none)
[2025-11-27 22:18:47] 2025-11-27 21:17:51,532 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 22:18:47] 2025-11-27 21:17:51,532 | INFO     | pilot state: finished 
[2025-11-27 22:18:47] 2025-11-27 21:17:51,532 | INFO     | transexitcode: 0
[2025-11-27 22:18:47] 2025-11-27 21:17:51,532 | INFO     | exeerrorcode: 0
[2025-11-27 22:18:47] 2025-11-27 21:17:51,532 | INFO     | exeerrordiag: 
[2025-11-27 22:18:47] 2025-11-27 21:17:51,532 | INFO     | exitcode: 0
[2025-11-27 22:18:47] 2025-11-27 21:17:51,533 | INFO     | exitmsg: OK
[2025-11-27 22:18:47] 2025-11-27 21:17:51,533 | INFO     | cpuconsumptiontime: 272757 s
[2025-11-27 22:18:47] 2025-11-27 21:17:51,533 | INFO     | nevents: 1000
[2025-11-27 22:18:47] 2025-11-27 21:17:51,533 | INFO     | neventsw: 0
[2025-11-27 22:18:47] 2025-11-27 21:17:51,533 | INFO     | pid: 1162483
[2025-11-27 22:18:47] 2025-11-27 21:17:51,533 | INFO     | pgrp: 1162483
[2025-11-27 22:18:47] 2025-11-27 21:17:51,533 | INFO     | corecount: 4
[2025-11-27 22:18:47] 2025-11-27 21:17:51,533 | INFO     | event service: False
[2025-11-27 22:18:47] 2025-11-27 21:17:51,534 | INFO     | sizes: {0: 2284093, 1: 2284348, 7: 2284610, 12: 2284638, 68738: 2343491, 68742: 2352509, 68743: 2352693, 68751: 2353035}
[2025-11-27 22:18:47] 2025-11-27 21:17:51,534 | INFO     | --------------------------------------------------
[2025-11-27 22:18:47] 2025-11-27 21:17:51,534 | INFO     | 
[2025-11-27 22:18:47] 2025-11-27 21:17:51,534 | INFO     | executing command: ls -lF /scratch/boinc/var/slot116/slots/0
[2025-11-27 22:18:47] 2025-11-27 21:17:51,570 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 22:18:47] 2025-11-27 21:17:51,570 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 22:18:47] 2025-11-27 21:17:51,570 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 22:18:47] 2025-11-27 21:17:51,570 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 22:18:47] 2025-11-27 21:17:51,570 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 22:18:47] 2025-11-27 21:17:51,571 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 22:18:47] 2025-11-27 21:17:51,571 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 22:18:47] 2025-11-27 21:17:51,571 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 22:18:47] 2025-11-27 21:17:51,571 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 22:18:47] 2025-11-27 21:17:51,571 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 22:18:47] 2025-11-27 21:17:51,571 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 22:18:47] 2025-11-27 21:17:51,571 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 22:18:47] 2025-11-27 21:17:51,571 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 22:18:47] 2025-11-27 21:17:51,572 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 22:18:47] 2025-11-27 21:17:51,572 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 22:18:47] 2025-11-27 21:17:51,572 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 22:18:47] 2025-11-27 21:17:51,572 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 22:18:47] 2025-11-27 21:17:51,572 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 22:18:47] 2025-11-27 21:17:51,572 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 22:18:47] 2025-11-27 21:17:51,572 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 22:18:47] 2025-11-27 21:17:51,573 | INFO     | job 6893867624 has completed (purged errors)
[2025-11-27 22:18:47] 2025-11-27 21:17:51,573 | INFO     | overall cleanup function is called
[2025-11-27 22:18:47] 2025-11-27 21:17:52,592 | INFO     | --- collectZombieJob: --- 10, [1162483]
[2025-11-27 22:18:47] 2025-11-27 21:17:52,593 | INFO     | zombie collector waiting for pid 1162483
[2025-11-27 22:18:47] 2025-11-27 21:17:52,593 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 22:18:47] 2025-11-27 21:17:52,593 | INFO     | collected zombie processes
[2025-11-27 22:18:47] 2025-11-27 21:17:52,593 | INFO     | will attempt to kill all subprocesses of pid=1162483
[2025-11-27 22:18:47] 2025-11-27 21:17:53,689 | INFO     | process IDs to be killed: [1162483] (in reverse order)
[2025-11-27 22:18:47] 2025-11-27 21:17:54,014 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 22:18:47] 2025-11-27 21:17:54,015 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 22:18:47] 2025-11-27 21:17:54,056 | INFO     | did not find any defunct processes belonging to 1162483
[2025-11-27 22:18:47] 2025-11-27 21:17:54,096 | INFO     | did not find any defunct processes belonging to 1162483
[2025-11-27 22:18:47] 2025-11-27 21:17:54,098 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 22:18:47] 2025-11-27 21:17:54,098 | INFO     | ready for new job
[2025-11-27 22:18:47] 2025-11-27 21:17:54,099 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 22:18:47] 2025-11-27 21:17:54,108 | INFO     | ***************************************
[2025-11-27 22:18:47] 2025-11-27 21:17:54,108 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 22:18:47] 2025-11-27 21:17:54,108 | INFO     | ***************************************
[2025-11-27 22:18:47] 2025-11-27 21:17:54,108 | INFO     | 
[2025-11-27 22:18:47] 2025-11-27 21:17:54,120 | INFO     | architecture information:
[2025-11-27 22:18:47] 2025-11-27 21:17:54,122 | INFO     | executing command: cat /etc/os-release
[2025-11-27 22:18:47] 2025-11-27 21:17:54,153 | INFO     | cat /etc/os-release:
[2025-11-27 22:18:47] NAME="CentOS Linux"
[2025-11-27 22:18:47] VERSION="7 (Core)"
[2025-11-27 22:18:47] ID="centos"
[2025-11-27 22:18:47] ID_LIKE="rhel fedora"
[2025-11-27 22:18:47] VERSION_ID="7"
[2025-11-27 22:18:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 22:18:47] ANSI_COLOR="0;31"
[2025-11-27 22:18:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 22:18:47] HOME_URL="https://www.centos.org/"
[2025-11-27 22:18:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 22:18:47] 
[2025-11-27 22:18:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 22:18:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 22:18:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 22:18:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 22:18:47] 
[2025-11-27 22:18:47] 2025-11-27 21:17:54,154 | INFO     | ***************************************
[2025-11-27 22:18:47] 2025-11-27 21:17:54,657 | INFO     | executing command: df -mP /scratch/boinc/var/slot116/slots/0
[2025-11-27 22:18:47] 2025-11-27 21:17:54,686 | INFO     | sufficient remaining disk space (3283764641792 B)
[2025-11-27 22:18:47] 2025-11-27 21:17:54,687 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 22:18:47] 2025-11-27 21:17:54,687 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 22:18:47] 2025-11-27 21:17:54,687 | INFO     | update_server=False
[2025-11-27 22:18:47] 2025-11-27 21:17:54,688 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 22:18:47] 2025-11-27 21:17:54,688 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:18:47] 2025-11-27 21:17:54,689 | INFO     | aborting loop
[2025-11-27 22:18:47] 2025-11-27 21:17:54,855 | INFO     | all payload control threads have been joined
[2025-11-27 22:18:47] 2025-11-27 21:17:54,995 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 22:18:47] 2025-11-27 21:17:55,056 | INFO     | all data control threads have been joined
[2025-11-27 22:18:47] 2025-11-27 21:17:55,529 | INFO     | all job control threads have been joined
[2025-11-27 22:18:47] 2025-11-27 21:17:55,693 | INFO     | [job] retrieve thread has finished
[2025-11-27 22:18:47] 2025-11-27 21:17:55,694 | INFO     | [job] job monitor thread has finished
[2025-11-27 22:18:47] 2025-11-27 21:17:55,861 | INFO     | [payload] control thread has finished
[2025-11-27 22:18:47] 2025-11-27 21:17:56,045 | INFO     | [payload] failed_post thread has finished
[2025-11-27 22:18:47] 2025-11-27 21:17:56,061 | INFO     | [data] control thread has finished
[2025-11-27 22:18:47] 2025-11-27 21:17:56,193 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:18:47] 2025-11-27 21:17:56,248 | INFO     | [payload] validate_post thread has finished
[2025-11-27 22:18:47] 2025-11-27 21:17:56,397 | INFO     | [data] copytool_in thread has finished
[2025-11-27 22:18:47] 2025-11-27 21:17:56,501 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 22:18:47] 2025-11-27 21:17:56,535 | INFO     | [job] control thread has finished
[2025-11-27 22:18:47] 2025-11-27 21:17:56,558 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 22:18:47] 2025-11-27 21:17:57,000 | INFO     | [data] copytool_out thread has finished
[2025-11-27 22:18:47] 2025-11-27 21:17:57,111 | INFO     | [job] validate thread has finished
[2025-11-27 22:18:47] 2025-11-27 21:17:57,116 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 22:18:47] 2025-11-27 21:17:57,199 | INFO     | [job] queue monitor thread has finished
[2025-11-27 22:18:47] 2025-11-27 21:17:57,442 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 22:18:47] 2025-11-27 21:18:01,449 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 22:18:47] 2025-11-27 21:18:04,762 | INFO     | job.realtimelogging is not enabled
[2025-11-27 22:18:47] 2025-11-27 21:18:05,767 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 22:18:47] 2025-11-27 21:18:24,110 | INFO     | PID=1152248 has CPU usage=16.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 22:18:47] 2025-11-27 21:18:24,111 | INFO     | .. there are 7 such processes running
[2025-11-27 22:18:47] 2025-11-27 21:18:24,111 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 22:18:47] 2025-11-27 21:18:24,111 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 22:18:47] 2025-11-27 21:18:24,111 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 22:18:47] 2025-11-27 21:18:30,653 | INFO     | [monitor] cgroup control has ended
[2025-11-27 22:18:47] 2025-11-27 21:18:31,403 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23201032357696)>', '<ExcThread(monitor, started 23200788338432)>']
[2025-11-27 22:18:47] 2025-11-27 21:18:32,143 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 22:18:47] 2025-11-27 21:18:32,144 | INFO     | [monitor] control thread has ended
[2025-11-27 22:18:47] 2025-11-27 21:18:36,428 | INFO     | all workflow threads have been joined
[2025-11-27 22:18:47] 2025-11-27 21:18:36,429 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 22:18:47] 2025-11-27 21:18:36,429 | INFO     | traces error code: 0
[2025-11-27 22:18:47] 2025-11-27 21:18:36,430 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 22:18:47] 2025-11-27 21:18:36,626 [wrapper] ==== pilot stdout END ====
[2025-11-27 22:18:47] 2025-11-27 21:18:36,631 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 22:18:47] 2025-11-27 21:18:36,636 [wrapper] pilotpid: 1152248
[2025-11-27 22:18:47] 2025-11-27 21:18:36,641 [wrapper] Pilot exit status: 0
[2025-11-27 22:18:47] 2025-11-27 21:18:36,659 [wrapper] pandaids: 6893867624
[2025-11-27 22:18:47] 2025-11-27 21:18:36,886 [wrapper] cleanup supervisor_pilot 2546338 1152249
[2025-11-27 22:18:47] 2025-11-27 21:18:36,891 [wrapper] Test setup, not cleaning
[2025-11-27 22:18:47] 2025-11-27 21:18:36,897 [wrapper] apfmon messages muted
[2025-11-27 22:18:47] 2025-11-27 21:18:36,901 [wrapper] ==== wrapper stdout END ====
[2025-11-27 22:18:47] 2025-11-27 21:18:36,907 [wrapper] ==== wrapper stderr END ====
[2025-11-27 22:18:47]  *** Error codes and diagnostics ***
[2025-11-27 22:18:47]     "exeErrorCode": 0,
[2025-11-27 22:18:47]     "exeErrorDiag": "",
[2025-11-27 22:18:47]     "pilotErrorCode": 0,
[2025-11-27 22:18:47]     "pilotErrorDiag": "",
[2025-11-27 22:18:47]  *** Listing of results directory ***
[2025-11-27 22:18:47] total 1319956
[2025-11-27 22:18:47] -rw-r--r-- 1 boinc boinc    576529 Nov 20 15:06 pilot3.tar.gz
[2025-11-27 22:18:47] -rw-r--r-- 1 boinc boinc      5112 Nov 20 15:35 queuedata.json
[2025-11-27 22:18:47] -rwx------ 1 boinc boinc     36292 Nov 20 15:36 runpilot2-wrapper.sh
[2025-11-27 22:18:47] -rw-r--r-- 1 boinc boinc       100 Nov 27 03:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 22:18:47] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 03:11 run_atlas
[2025-11-27 22:18:47] -rw-r--r-- 1 boinc boinc       105 Nov 27 03:11 job.xml
[2025-11-27 22:18:47] -rw-r--r-- 1 boinc boinc      6687 Nov 27 03:11 init_data.xml
[2025-11-27 22:18:47] -rw-r--r-- 2 boinc boinc 410223734 Nov 27 03:11 EVNT.47493127._000628.pool.root.1
[2025-11-27 22:18:47] -rw-r--r-- 2 boinc boinc     15847 Nov 27 03:11 start_atlas.sh
[2025-11-27 22:18:47] drwxrwx--x 2 boinc boinc      4096 Nov 27 03:11 shared
[2025-11-27 22:18:47] -rw-r--r-- 2 boinc boinc    590099 Nov 27 03:11 input.tar.gz
[2025-11-27 22:18:47] -rw-r--r-- 1 boinc boinc         0 Nov 27 03:11 boinc_lockfile
[2025-11-27 22:18:47] -rw-r--r-- 1 boinc boinc      2782 Nov 27 03:11 pandaJob.out
[2025-11-27 22:18:47] -rw------- 1 boinc boinc    991530 Nov 27 03:11 agis_schedconf.cvmfs.json
[2025-11-27 22:18:47] drwx------ 5 boinc boinc      4096 Nov 27 03:11 pilot3
[2025-11-27 22:18:47] -rw-r--r-- 1 boinc boinc       532 Nov 27 22:08 boinc_task_state.xml
[2025-11-27 22:18:47] -rw------- 1 boinc boinc 915348025 Nov 27 22:16 HITS.47523449._006271.pool.root.1
[2025-11-27 22:18:47] -rw------- 1 boinc boinc        95 Nov 27 22:17 pilot_heartbeat.json
[2025-11-27 22:18:47] -rw------- 1 boinc boinc      1041 Nov 27 22:17 memory_monitor_summary.json
[2025-11-27 22:18:47] -rw------- 1 boinc boinc   1516240 Nov 27 22:17 agis_ddmendpoints.agis.ALL.json
[2025-11-27 22:18:47] -rw------- 1 boinc boinc   1819460 Nov 27 22:17 log.47523449._006271.job.log.tgz.1
[2025-11-27 22:18:47] -rw------- 1 boinc boinc      8591 Nov 27 22:17 heartbeat.json
[2025-11-27 22:18:47] -rw------- 1 boinc boinc      4908 Nov 27 22:18 pilotlog.txt
[2025-11-27 22:18:47] -rw------- 1 boinc boinc   9249506 Nov 27 22:18 log.47523449._006271.job.log.1
[2025-11-27 22:18:47] -rw------- 1 boinc boinc       353 Nov 27 22:18 output.list
[2025-11-27 22:18:47] -rw-r--r-- 1 boinc boinc       620 Nov 27 22:18 runtime_log
[2025-11-27 22:18:47] -rw------- 1 boinc boinc  11089920 Nov 27 22:18 result.tar.gz
[2025-11-27 22:18:47] -rw-r--r-- 1 boinc boinc      9223 Nov 27 22:18 runtime_log.err
[2025-11-27 22:18:47] -rw------- 1 boinc boinc       670 Nov 27 22:18 8jkNDmBxKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmM6HKDm7L28nm.diag
[2025-11-27 22:18:47] -rw-r--r-- 1 boinc boinc      8192 Nov 27 22:18 boinc_mmap_file
[2025-11-27 22:18:47] -rw-r--r-- 1 boinc boinc        28 Nov 27 22:18 wrapper_checkpoint.txt
[2025-11-27 22:18:47] -rw-r--r-- 1 boinc boinc     21109 Nov 27 22:18 stderr.txt
[2025-11-27 22:18:47] HITS file was successfully produced:
[2025-11-27 22:18:47] -rw------- 1 boinc boinc 915348025 Nov 27 22:16 shared/HITS.pool.root.1
[2025-11-27 22:18:47]  *** Contents of shared directory: ***
[2025-11-27 22:18:47] total 1305944
[2025-11-27 22:18:47] -rw-r--r-- 2 boinc boinc 410223734 Nov 27 03:11 ATLAS.root_0
[2025-11-27 22:18:47] -rw-r--r-- 2 boinc boinc     15847 Nov 27 03:11 start_atlas.sh
[2025-11-27 22:18:47] -rw-r--r-- 2 boinc boinc    590099 Nov 27 03:11 input.tar.gz
[2025-11-27 22:18:47] -rw------- 1 boinc boinc 915348025 Nov 27 22:16 HITS.pool.root.1
[2025-11-27 22:18:47] -rw------- 1 boinc boinc  11089920 Nov 27 22:18 result.tar.gz
22:18:49 (1148243): run_atlas exited; CPU time 277482.646467
22:18:49 (1148243): called boinc_finish(0)

</stderr_txt>
]]>

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