Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:57:31 (1627998): wrapper (7.7.26015): starting
02:57:31 (1627998): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 02:57:31] Arguments: --nthreads 4
[2025-11-21 02:57:31] Threads: 4
[2025-11-21 02:57:31] Checking for CVMFS
[2025-11-21 02:57:31] No cvmfs_config command found, will try listing directly
[2025-11-21 02:57:31] CVMFS is ok
[2025-11-21 02:57:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 02:57:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 02:57:31] Further information can be found at the LHC@home message board.
[2025-11-21 02:57:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 02:57:31] Checking for apptainer binary...
[2025-11-21 02:57:31] which: no apptainer in ((null))
[2025-11-21 02:57:31] apptainer is not installed, using version from CVMFS
[2025-11-21 02:57:31] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 02:57:32] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut30.grid.cesnet.cz
[2025-11-21 02:57:32] apptainer works
[2025-11-21 02:57:32] Set ATHENA_PROC_NUMBER=4
[2025-11-21 02:57:32] Set ATHENA_CORE_NUMBER=4
[2025-11-21 02:57:32] Starting ATLAS job with PandaID=6893867551
[2025-11-21 02:57:32] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 00:33:29]  *** The last 200 lines of the pilot log: ***
[2025-11-22 00:33:29] 2025-11-21 23:24:11,961 | INFO     | time since job start (77188s) is within the limit (172800.0s)
[2025-11-22 00:33:29] 2025-11-21 23:24:12,186 | INFO     | monitor loop #5573: job 0:6893867551 is in state 'finished'
[2025-11-22 00:33:29] 2025-11-21 23:24:12,186 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 00:33:29] 2025-11-21 23:24:12,509 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 00:33:29] 2025-11-21 23:24:12,517 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2425.1814750000003
[2025-11-22 00:33:29] 2025-11-21 23:24:12,525 | INFO     | using path: /scratch/boinc/var/slot40/slots/1/PanDA_Pilot-6893867551/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 00:33:29] 2025-11-21 23:24:12,525 | INFO     | extracted standard info from prmon json
[2025-11-22 00:33:29] 2025-11-21 23:24:12,526 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 00:33:29] 2025-11-21 23:24:12,526 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 00:33:29] 2025-11-21 23:24:12,550 | INFO     | fitting pss+swap vs Time
[2025-11-22 00:33:29] 2025-11-21 23:24:12,552 | INFO     | sum of square deviations: 627697026597.9491
[2025-11-22 00:33:29] 2025-11-21 23:24:12,594 | INFO     | sum of deviations: 2020127634570.4048
[2025-11-22 00:33:29] 2025-11-21 23:24:12,594 | INFO     | mean x: 1763728840.006324
[2025-11-22 00:33:29] 2025-11-21 23:24:12,595 | INFO     | mean y: 2314257.4490118576
[2025-11-22 00:33:29] 2025-11-21 23:24:12,595 | INFO     | intersect: -5673923192.481934
[2025-11-22 00:33:29] 2025-11-21 23:24:12,597 | INFO     | chi2: 3.78790432378624
[2025-11-22 00:33:29] 2025-11-21 23:24:12,599 | INFO     | sum of square deviations: 620283364452.949
[2025-11-22 00:33:29] 2025-11-21 23:24:12,641 | INFO     | sum of deviations: 2268957910453.93
[2025-11-22 00:33:29] 2025-11-21 23:24:12,642 | INFO     | mean x: 1763728687.5063493
[2025-11-22 00:33:29] 2025-11-21 23:24:12,642 | INFO     | mean y: 2319373.4468253967
[2025-11-22 00:33:29] 2025-11-21 23:24:12,642 | INFO     | intersect: -6449290304.883689
[2025-11-22 00:33:29] 2025-11-21 23:24:12,644 | INFO     | chi2: 1.9647969225853317
[2025-11-22 00:33:29] 2025-11-21 23:24:12,644 | INFO     | current chi2=1.9647969225853317 (change=48.129710926241195 %)
[2025-11-22 00:33:29] 2025-11-21 23:24:12,646 | INFO     | sum of square deviations: 612928308057.9492
[2025-11-22 00:33:29] 2025-11-21 23:24:12,688 | INFO     | sum of deviations: 2280889847913.108
[2025-11-22 00:33:29] 2025-11-21 23:24:12,689 | INFO     | mean x: 1763728535.0063746
[2025-11-22 00:33:29] 2025-11-21 23:24:12,689 | INFO     | mean y: 2319620.361752988
[2025-11-22 00:33:29] 2025-11-21 23:24:12,689 | INFO     | intersect: -6561042614.802553
[2025-11-22 00:33:29] 2025-11-21 23:24:12,691 | INFO     | chi2: 1.927301779914434
[2025-11-22 00:33:29] 2025-11-21 23:24:12,691 | INFO     | current chi2=1.927301779914434 (change=1.9083469767226884 %)
[2025-11-22 00:33:29] 2025-11-21 23:24:12,691 | INFO     | right removable region: 1254
[2025-11-22 00:33:29] 2025-11-21 23:24:12,693 | INFO     | sum of square deviations: 620283359572.949
[2025-11-22 00:33:29] 2025-11-21 23:24:12,735 | INFO     | sum of deviations: 1784304558460.3748
[2025-11-22 00:33:29] 2025-11-21 23:24:12,736 | INFO     | mean x: 1763728992.5063493
[2025-11-22 00:33:29] 2025-11-21 23:24:12,736 | INFO     | mean y: 2319102.203174603
[2025-11-22 00:33:29] 2025-11-21 23:24:12,736 | INFO     | intersect: -5071216456.42355
[2025-11-22 00:33:29] 2025-11-21 23:24:12,738 | INFO     | chi2: 2.009281143516114
[2025-11-22 00:33:29] 2025-11-21 23:24:12,738 | INFO     | current chi2=2.009281143516114 (change=46.955335410697074 %)
[2025-11-22 00:33:29] 2025-11-21 23:24:12,740 | INFO     | sum of square deviations: 612928298297.9491
[2025-11-22 00:33:29] 2025-11-21 23:24:12,782 | INFO     | sum of deviations: 1750109886856.0715
[2025-11-22 00:33:29] 2025-11-21 23:24:12,782 | INFO     | mean x: 1763729145.0063746
[2025-11-22 00:33:29] 2025-11-21 23:24:12,782 | INFO     | mean y: 2319810.9912350597
[2025-11-22 00:33:29] 2025-11-21 23:24:12,782 | INFO     | intersect: -5033701242.341474
[2025-11-22 00:33:29] 2025-11-21 23:24:12,784 | INFO     | chi2: 2.004963307034888
[2025-11-22 00:33:29] 2025-11-21 23:24:12,784 | INFO     | current chi2=2.004963307034888 (change=0.21489459029464 %)
[2025-11-22 00:33:29] 2025-11-21 23:24:12,784 | INFO     | left removable region: 20
[2025-11-22 00:33:29] 2025-11-21 23:24:12,786 | INFO     | sum of square deviations: 582671777998.448
[2025-11-22 00:33:29] 2025-11-21 23:24:12,831 | INFO     | sum of deviations: 1972721740307.7307
[2025-11-22 00:33:29] 2025-11-21 23:24:12,832 | INFO     | mean x: 1763729114.506483
[2025-11-22 00:33:29] 2025-11-21 23:24:12,832 | INFO     | mean y: 2325928.158833063
[2025-11-22 00:33:29] 2025-11-21 23:24:12,832 | INFO     | intersect: -5969040627.730732
[2025-11-22 00:33:29] 2025-11-21 23:24:12,834 | INFO     | chi2: 0.13499201455119464
[2025-11-22 00:33:29] 2025-11-21 23:24:12,834 | INFO     | current memory leak: 3.39 B/s (using 1234 data points, chi2=0.13)
[2025-11-22 00:33:29] 2025-11-21 23:24:12,835 | INFO     | could have reported an average CPU frequency of 2503 MHz (46 samples)
[2025-11-22 00:33:29] 2025-11-21 23:24:12,835 | INFO     | ..............................
[2025-11-22 00:33:29] 2025-11-21 23:24:12,835 | INFO     | . Timing measurements:
[2025-11-22 00:33:29] 2025-11-21 23:24:12,835 | INFO     | . get job = 0 s
[2025-11-22 00:33:29] 2025-11-21 23:24:12,836 | INFO     | . initial setup = 1 s
[2025-11-22 00:33:29] 2025-11-21 23:24:12,836 | INFO     | . payload setup = 5 s
[2025-11-22 00:33:29] 2025-11-21 23:24:12,836 | INFO     | . stage-in = 0 s
[2025-11-22 00:33:29] 2025-11-21 23:24:12,836 | INFO     | . payload execution = 77153 s
[2025-11-22 00:33:29] 2025-11-21 23:24:12,836 | INFO     | . stage-out = 3 s
[2025-11-22 00:33:29] 2025-11-21 23:24:12,836 | INFO     | . log creation = 0 s
[2025-11-22 00:33:29] 2025-11-21 23:24:12,836 | INFO     | ..............................
[2025-11-22 00:33:29] 2025-11-21 23:24:12,944 | INFO     | 
[2025-11-22 00:33:29] 2025-11-21 23:24:12,944 | INFO     | job summary report
[2025-11-22 00:33:29] 2025-11-21 23:24:12,944 | INFO     | --------------------------------------------------
[2025-11-22 00:33:29] 2025-11-21 23:24:12,944 | INFO     | PanDA job id: 6893867551
[2025-11-22 00:33:29] 2025-11-21 23:24:12,945 | INFO     | task id: 47523449
[2025-11-22 00:33:29] 2025-11-21 23:24:12,945 | INFO     | errors: (none)
[2025-11-22 00:33:29] 2025-11-21 23:24:12,945 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 00:33:29] 2025-11-21 23:24:12,945 | INFO     | pilot state: finished 
[2025-11-22 00:33:29] 2025-11-21 23:24:12,945 | INFO     | transexitcode: 0
[2025-11-22 00:33:29] 2025-11-21 23:24:12,945 | INFO     | exeerrorcode: 0
[2025-11-22 00:33:29] 2025-11-21 23:24:12,945 | INFO     | exeerrordiag: 
[2025-11-22 00:33:29] 2025-11-21 23:24:12,945 | INFO     | exitcode: 0
[2025-11-22 00:33:29] 2025-11-21 23:24:12,945 | INFO     | exitmsg: OK
[2025-11-22 00:33:29] 2025-11-21 23:24:12,945 | INFO     | cpuconsumptiontime: 305180 s
[2025-11-22 00:33:29] 2025-11-21 23:24:12,945 | INFO     | nevents: 1000
[2025-11-22 00:33:29] 2025-11-21 23:24:12,945 | INFO     | neventsw: 0
[2025-11-22 00:33:29] 2025-11-21 23:24:12,945 | INFO     | pid: 1639189
[2025-11-22 00:33:29] 2025-11-21 23:24:12,945 | INFO     | pgrp: 1639189
[2025-11-22 00:33:29] 2025-11-21 23:24:12,945 | INFO     | corecount: 4
[2025-11-22 00:33:29] 2025-11-21 23:24:12,945 | INFO     | event service: False
[2025-11-22 00:33:29] 2025-11-21 23:24:12,946 | INFO     | sizes: {0: 2298818, 4: 2299080, 11: 2299108, 77163: 2359342, 77167: 2368358, 77169: 2368414, 77175: 2368788}
[2025-11-22 00:33:29] 2025-11-21 23:24:12,946 | INFO     | --------------------------------------------------
[2025-11-22 00:33:29] 2025-11-21 23:24:12,946 | INFO     | 
[2025-11-22 00:33:29] 2025-11-21 23:24:12,946 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/1
[2025-11-22 00:33:29] 2025-11-21 23:24:12,965 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 00:33:29] 2025-11-21 23:24:12,965 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 00:33:29] 2025-11-21 23:24:12,965 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 00:33:29] 2025-11-21 23:24:12,966 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 00:33:29] 2025-11-21 23:24:12,966 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 00:33:29] 2025-11-21 23:24:12,966 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 00:33:29] 2025-11-21 23:24:12,966 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 00:33:29] 2025-11-21 23:24:12,966 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 00:33:29] 2025-11-21 23:24:12,966 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 00:33:29] 2025-11-21 23:24:12,966 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 00:33:29] 2025-11-21 23:24:12,967 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 00:33:29] 2025-11-21 23:24:12,967 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 00:33:29] 2025-11-21 23:24:12,967 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 00:33:29] 2025-11-21 23:24:12,967 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 00:33:29] 2025-11-21 23:24:12,967 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 00:33:29] 2025-11-21 23:24:12,967 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 00:33:29] 2025-11-21 23:24:12,967 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 00:33:29] 2025-11-21 23:24:12,967 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 00:33:29] 2025-11-21 23:24:12,967 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 00:33:29] 2025-11-21 23:24:12,968 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 00:33:29] 2025-11-21 23:24:12,968 | INFO     | job 6893867551 has completed (purged errors)
[2025-11-22 00:33:29] 2025-11-21 23:24:12,968 | INFO     | overall cleanup function is called
[2025-11-22 00:33:29] 2025-11-21 23:24:13,981 | INFO     | --- collectZombieJob: --- 10, [1639189]
[2025-11-22 00:33:29] 2025-11-21 23:24:13,981 | INFO     | zombie collector waiting for pid 1639189
[2025-11-22 00:33:29] 2025-11-21 23:24:13,982 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 00:33:29] 2025-11-21 23:24:13,982 | INFO     | collected zombie processes
[2025-11-22 00:33:29] 2025-11-21 23:24:13,982 | INFO     | will attempt to kill all subprocesses of pid=1639189
[2025-11-22 00:33:29] 2025-11-21 23:24:14,332 | INFO     | process IDs to be killed: [1639189] (in reverse order)
[2025-11-22 00:33:29] 2025-11-21 23:24:14,416 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 00:33:29] 2025-11-21 23:24:14,416 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 00:33:29] 2025-11-21 23:24:14,427 | INFO     | did not find any defunct processes belonging to 1639189
[2025-11-22 00:33:29] 2025-11-21 23:24:14,438 | INFO     | did not find any defunct processes belonging to 1639189
[2025-11-22 00:33:29] 2025-11-21 23:24:14,439 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 00:33:29] 2025-11-21 23:24:14,439 | INFO     | ready for new job
[2025-11-22 00:33:29] 2025-11-21 23:24:14,440 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 00:33:29] 2025-11-21 23:24:14,445 | INFO     | ***************************************
[2025-11-22 00:33:29] 2025-11-21 23:24:14,445 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 00:33:29] 2025-11-21 23:24:14,445 | INFO     | ***************************************
[2025-11-22 00:33:29] 2025-11-21 23:24:14,446 | INFO     | 
[2025-11-22 00:33:29] 2025-11-21 23:24:14,448 | INFO     | architecture information:
[2025-11-22 00:33:29] 2025-11-21 23:24:14,449 | INFO     | executing command: cat /etc/os-release
[2025-11-22 00:33:29] 2025-11-21 23:24:14,462 | INFO     | cat /etc/os-release:
[2025-11-22 00:33:29] NAME="CentOS Linux"
[2025-11-22 00:33:29] VERSION="7 (Core)"
[2025-11-22 00:33:29] ID="centos"
[2025-11-22 00:33:29] ID_LIKE="rhel fedora"
[2025-11-22 00:33:29] VERSION_ID="7"
[2025-11-22 00:33:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 00:33:29] ANSI_COLOR="0;31"
[2025-11-22 00:33:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 00:33:29] HOME_URL="https://www.centos.org/"
[2025-11-22 00:33:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 00:33:29] 
[2025-11-22 00:33:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 00:33:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 00:33:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 00:33:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 00:33:29] 
[2025-11-22 00:33:29] 2025-11-21 23:24:14,462 | INFO     | ***************************************
[2025-11-22 00:33:29] 2025-11-21 23:24:14,964 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/1
[2025-11-22 00:33:29] 2025-11-21 23:24:14,980 | INFO     | sufficient remaining disk space (1665707016192 B)
[2025-11-22 00:33:29] 2025-11-21 23:24:14,980 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 00:33:29] 2025-11-21 23:24:14,981 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 00:33:29] 2025-11-21 23:24:14,981 | INFO     | update_server=False
[2025-11-22 00:33:29] 2025-11-21 23:24:14,981 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 00:33:29] 2025-11-21 23:24:15,232 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 00:33:29] 2025-11-21 23:24:15,367 | INFO     | all data control threads have been joined
[2025-11-22 00:33:29] 2025-11-21 23:24:15,680 | INFO     | all payload control threads have been joined
[2025-11-22 00:33:29] 2025-11-21 23:24:15,695 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 00:33:29] 2025-11-21 23:24:15,695 | INFO     | aborting loop
[2025-11-22 00:33:29] 2025-11-21 23:24:15,986 | INFO     | [job] retrieve thread has finished
[2025-11-22 00:33:29] 2025-11-21 23:24:16,003 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 00:33:29] 2025-11-21 23:24:16,057 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 00:33:29] 2025-11-21 23:24:16,371 | INFO     | [data] control thread has finished
[2025-11-22 00:33:29] 2025-11-21 23:24:16,378 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 00:33:29] 2025-11-21 23:24:16,432 | INFO     | [payload] validate_post thread has finished
[2025-11-22 00:33:29] 2025-11-21 23:24:16,462 | INFO     | [job] validate thread has finished
[2025-11-22 00:33:29] 2025-11-21 23:24:16,474 | INFO     | all job control threads have been joined
[2025-11-22 00:33:29] 2025-11-21 23:24:16,505 | INFO     | [data] copytool_in thread has finished
[2025-11-22 00:33:29] 2025-11-21 23:24:16,623 | INFO     | [payload] failed_post thread has finished
[2025-11-22 00:33:29] 2025-11-21 23:24:16,685 | INFO     | [payload] control thread has finished
[2025-11-22 00:33:29] 2025-11-21 23:24:16,700 | INFO     | [job] job monitor thread has finished
[2025-11-22 00:33:29] 2025-11-21 23:24:16,920 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 00:33:29] 2025-11-21 23:24:17,237 | INFO     | [data] copytool_out thread has finished
[2025-11-22 00:33:29] 2025-11-21 23:24:17,479 | INFO     | [job] control thread has finished
[2025-11-22 00:33:29] 2025-11-21 23:24:17,612 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 00:33:29] 2025-11-21 23:24:17,955 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 00:33:29] 2025-11-21 23:24:18,960 | INFO     | [job] queue monitor thread has finished
[2025-11-22 00:33:29] 2025-11-21 23:24:21,617 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 00:33:29] 2025-11-21 23:24:45,486 | INFO     | PID=1631999 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 00:33:29] 2025-11-21 23:24:45,487 | INFO     | .. there are 3 such processes running
[2025-11-22 00:33:29] 2025-11-21 23:24:45,487 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 00:33:29] 2025-11-21 23:24:45,488 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 00:33:29] 2025-11-21 23:24:45,488 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 00:33:29] 2025-11-21 23:24:49,638 | INFO     | [monitor] cgroup control has ended
[2025-11-22 00:33:29] 2025-11-21 23:24:49,730 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22394024134464)>', '<ExcThread(monitor, started 22393789585152)>']
[2025-11-22 00:33:29] 2025-11-21 23:24:50,511 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 00:33:29] 2025-11-21 23:24:50,511 | INFO     | [monitor] control thread has ended
[2025-11-22 00:33:29] 2025-11-21 23:24:54,755 | INFO     | all workflow threads have been joined
[2025-11-22 00:33:29] 2025-11-21 23:24:54,755 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 00:33:29] 2025-11-21 23:24:54,756 | INFO     | traces error code: 0
[2025-11-22 00:33:29] 2025-11-21 23:24:54,756 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 00:33:29] 2025-11-21 23:24:54,872 [wrapper] ==== pilot stdout END ====
[2025-11-22 00:33:29] 2025-11-21 23:24:54,875 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 00:33:29] 2025-11-21 23:24:54,877 [wrapper] pilotpid: 1631999
[2025-11-22 00:33:29] 2025-11-21 23:24:54,879 [wrapper] Pilot exit status: 0
[2025-11-22 00:33:29] 2025-11-21 23:24:54,888 [wrapper] pandaids: 6893867551
[2025-11-22 00:33:29] 2025-11-21 23:24:54,946 [wrapper] cleanup supervisor_pilot 2479167 1632000
[2025-11-22 00:33:29] 2025-11-21 23:24:54,949 [wrapper] Test setup, not cleaning
[2025-11-22 00:33:29] 2025-11-21 23:24:54,952 [wrapper] apfmon messages muted
[2025-11-22 00:33:29] 2025-11-21 23:24:54,954 [wrapper] ==== wrapper stdout END ====
[2025-11-22 00:33:29] 2025-11-21 23:24:54,956 [wrapper] ==== wrapper stderr END ====
[2025-11-22 00:33:29]  *** Error codes and diagnostics ***
[2025-11-22 00:33:29]     "exeErrorCode": 0,
[2025-11-22 00:33:29]     "exeErrorDiag": "",
[2025-11-22 00:33:29]     "pilotErrorCode": 0,
[2025-11-22 00:33:29]     "pilotErrorDiag": "",
[2025-11-22 00:33:29]  *** Listing of results directory ***
[2025-11-22 00:33:29] total 1331636
[2025-11-22 00:33:29] -rw-r--r-- 1 boinc boinc    576529 Nov 20 15:06 pilot3.tar.gz
[2025-11-22 00:33:29] -rw-r--r-- 1 boinc boinc      5112 Nov 20 15:33 queuedata.json
[2025-11-22 00:33:29] -rwx------ 1 boinc boinc     36292 Nov 20 15:35 runpilot2-wrapper.sh
[2025-11-22 00:33:29] -rw-r--r-- 1 boinc boinc       100 Nov 21 02:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 00:33:29] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 02:02 run_atlas
[2025-11-22 00:33:29] -rw-r--r-- 1 boinc boinc       105 Nov 21 02:02 job.xml
[2025-11-22 00:33:29] -rw-r--r-- 2 boinc boinc 410376236 Nov 21 02:57 EVNT.47493127._000621.pool.root.1
[2025-11-22 00:33:29] -rw-r--r-- 1 boinc boinc      6420 Nov 21 02:57 init_data.xml
[2025-11-22 00:33:29] -rw-r--r-- 2 boinc boinc    590098 Nov 21 02:57 input.tar.gz
[2025-11-22 00:33:29] -rw-r--r-- 2 boinc boinc     15847 Nov 21 02:57 start_atlas.sh
[2025-11-22 00:33:29] drwxrwx--x 2 boinc boinc      4096 Nov 21 02:57 shared
[2025-11-22 00:33:29] -rw-r--r-- 1 boinc boinc         0 Nov 21 02:57 boinc_lockfile
[2025-11-22 00:33:29] -rw-r--r-- 1 boinc boinc      2786 Nov 21 02:57 pandaJob.out
[2025-11-22 00:33:29] -rw------- 1 boinc boinc    989817 Nov 21 02:57 agis_schedconf.cvmfs.json
[2025-11-22 00:33:29] drwx------ 5 boinc boinc      4096 Nov 21 02:57 pilot3
[2025-11-22 00:33:29] -rw-r--r-- 1 boinc boinc       530 Nov 22 00:14 boinc_task_state.xml
[2025-11-22 00:33:29] -rw------- 1 boinc boinc 923730485 Nov 22 00:23 HITS.47523449._006202.pool.root.1
[2025-11-22 00:33:29] -rw------- 1 boinc boinc      1051 Nov 22 00:23 memory_monitor_summary.json
[2025-11-22 00:33:29] -rw------- 1 boinc boinc   1526164 Nov 22 00:24 agis_ddmendpoints.agis.ALL.json
[2025-11-22 00:33:29] -rw------- 1 boinc boinc   1939765 Nov 22 00:24 log.47523449._006202.job.log.tgz.1
[2025-11-22 00:33:29] -rw------- 1 boinc boinc      8644 Nov 22 00:24 heartbeat.json
[2025-11-22 00:33:29] -rw------- 1 boinc boinc        95 Nov 22 00:24 pilot_heartbeat.json
[2025-11-22 00:33:29] -rw------- 1 boinc boinc      4834 Nov 22 00:24 pilotlog.txt
[2025-11-22 00:33:29] -rw------- 1 boinc boinc  10842405 Nov 22 00:24 log.47523449._006202.job.log.1
[2025-11-22 00:33:29] -rw------- 1 boinc boinc       353 Nov 22 00:24 output.list
[2025-11-22 00:33:29] -rw-r--r-- 1 boinc boinc       620 Nov 22 00:24 runtime_log
[2025-11-22 00:33:29] -rw------- 1 boinc boinc  12800000 Nov 22 00:24 result.tar.gz
[2025-11-22 00:33:29] -rw-r--r-- 1 boinc boinc      9206 Nov 22 00:24 runtime_log.err
[2025-11-22 00:33:29] -rw------- 1 boinc boinc       673 Nov 22 00:24 oHRODmWwKg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm7nGKDmSSbwHn.diag
[2025-11-22 00:33:29] -rw-r--r-- 1 boinc boinc        27 Nov 22 00:33 wrapper_checkpoint.txt
[2025-11-22 00:33:29] -rw-r--r-- 1 boinc boinc      8192 Nov 22 00:33 boinc_mmap_file
[2025-11-22 00:33:29] -rw-r--r-- 1 boinc boinc     21103 Nov 22 00:33 stderr.txt
[2025-11-22 00:33:29] HITS file was successfully produced:
[2025-11-22 00:33:29] -rw------- 1 boinc boinc 923730485 Nov 22 00:23 shared/HITS.pool.root.1
[2025-11-22 00:33:29]  *** Contents of shared directory: ***
[2025-11-22 00:33:29] total 1315948
[2025-11-22 00:33:29] -rw-r--r-- 2 boinc boinc 410376236 Nov 21 02:57 ATLAS.root_0
[2025-11-22 00:33:29] -rw-r--r-- 2 boinc boinc    590098 Nov 21 02:57 input.tar.gz
[2025-11-22 00:33:29] -rw-r--r-- 2 boinc boinc     15847 Nov 21 02:57 start_atlas.sh
[2025-11-22 00:33:29] -rw------- 1 boinc boinc 923730485 Nov 22 00:23 HITS.pool.root.1
[2025-11-22 00:33:29] -rw------- 1 boinc boinc  12800000 Nov 22 00:24 result.tar.gz
00:33:31 (1627998): run_atlas exited; CPU time 307991.474990
00:33:31 (1627998): called boinc_finish(0)

</stderr_txt>
]]>

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