Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:56:16 (3676832): wrapper (7.7.26015): starting
16:56:16 (3676832): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 16:56:16] Arguments: --nthreads 12
[2025-11-20 16:56:16] Threads: 12
[2025-11-20 16:56:16] Checking for CVMFS
[2025-11-20 16:56:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 16:56:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 16:56:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 16:56:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 16:56:17] 2.11.5.0 433116 20446 361692 153102 1 685 37294049 45568000 12707 130560 0 222716451 99.795 134379442 16121 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-20 16:56:17] CVMFS is ok
[2025-11-20 16:56:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 16:56:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 16:56:17] Further information can be found at the LHC@home message board.
[2025-11-20 16:56:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 16:56:17] Checking for apptainer binary...
[2025-11-20 16:56:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 16:56:17] Running /usr/bin/apptainer --version
[2025-11-20 16:56:17] apptainer version 1.4.1-1.el9
[2025-11-20 16:56:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 16:56:17] wns0062.triumf.lcg
[2025-11-20 16:56:17] apptainer works
[2025-11-20 16:56:17] Set ATHENA_PROC_NUMBER=12
[2025-11-20 16:56:17] Set ATHENA_CORE_NUMBER=12
[2025-11-20 16:56:17] Starting ATLAS job with PandaID=6893880788
[2025-11-20 16:56:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 17:00:34]  *** The last 200 lines of the pilot log: ***
[2025-11-20 17:00:34] 2025-11-21 00:59:55,823 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 17:00:34] 2025-11-21 00:59:55,824 | WARNING  | wrong length of table data, x=[1763686616.0], y=[1819.0] (must be same and length>=4)
[2025-11-20 17:00:34] 2025-11-21 00:59:55,824 | INFO     | could have reported an average CPU frequency of 2606 MHz (4 samples)
[2025-11-20 17:00:34] 2025-11-21 00:59:55,824 | INFO     | ..............................
[2025-11-20 17:00:34] 2025-11-21 00:59:55,824 | INFO     | . Timing measurements:
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | . get job = 0 s
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | . initial setup = 2 s
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | . payload setup = 6 s
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | . stage-in = 0 s
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | . payload execution = 61 s
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | . stage-out = 0 s
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | . log creation = 0 s
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | ..............................
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893880788/pilotlog.txt
[2025-11-20 17:00:34] 2025-11-21 00:59:55,836 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-20 17:00:34] - Log from pilotlog.txt -
[2025-11-20 17:00:34] 2025-11-21 00:59:55,822 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893880788/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 17:00:34] 2025-11-21 00:59:55,823 | INFO     | extracted standard info from prmon json
[2025-11-20 17:00:34] 2025-11-21 00:59:55,823 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 17:00:34] 2025-11-21 00:59:55,823 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 17:00:34] 2025-11-21 00:59:55,823 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 17:00:34] 2025-11-21 00:59:55,823 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 17:00:34] 2025-11-21 00:59:55,824 | WARNING  | wrong length of table data, x=[1763686616.0], y=[1819.0] (must be same and length>=4)
[2025-11-20 17:00:34] 2025-11-21 00:59:55,824 | INFO     | could have reported an average CPU frequency of 2606 MHz (4 samples)
[2025-11-20 17:00:34] 2025-11-21 00:59:55,824 | INFO     | ..............................
[2025-11-20 17:00:34] 2025-11-21 00:59:55,824 | INFO     | . Timing measurements:
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | . get job = 0 s
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | . initial setup = 2 s
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | . payload setup = 6 s
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | . stage-in = 0 s
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | . payload execution = 61 s
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | . stage-out = 0 s
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | . log creation = 0 s
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | ..............................
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893880788/pilotlog.txt
[2025-11-20 17:00:34] 2025-11-21 00:59:55,836 | WARNING  | 
[2025-11-20 17:00:34] [begin log extracts]
[2025-11-20 17:00:34] - Log from pilotlog.txt -
[2025-11-20 17:00:34] 2025-11-21 00:59:55,822 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893880788/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 17:00:34] 2025-11-21 00:59:55,823 | INFO     | extracted standard info from prmon json
[2025-11-20 17:00:34] 2025-11-21 00:59:55,823 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 17:00:34] 2025-11-21 00:59:55,823 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 17:00:34] 2025-11-21 00:59:55,823 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 17:00:34] 2025-11-21 00:59:55,823 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 17:00:34] 2025-11-21 00:59:55,824 | WARNING  | wrong length of table data, x=[1763686616.0], y=[1819.0] (must be same and length>=4)
[2025-11-20 17:00:34] 2025-11-21 00:59:55,824 | INFO     | could have reported an average CPU frequency of 2606 MHz (4 samples)
[2025-11-20 17:00:34] 2025-11-21 00:59:55,824 | INFO     | ..............................
[2025-11-20 17:00:34] 2025-11-21 00:59:55,824 | INFO     | . Timing measurements:
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | . get job = 0 s
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | . initial setup = 2 s
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | . payload setup = 6 s
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | . stage-in = 0 s
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | . payload execution = 61 s
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | . stage-out = 0 s
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | . log creation = 0 s
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | ..............................
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 17:00:34] 2025-11-21 00:59:55,825 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893880788/pilotlog.txt
[2025-11-20 17:00:34] [end log extracts]
[2025-11-20 17:00:34] 2025-11-21 00:59:55,837 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-20 17:00:34] 2025-11-21 00:59:55,837 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-20 17:00:34] 2025-11-21 00:59:55,897 | INFO     | 
[2025-11-20 17:00:34] 2025-11-21 00:59:55,897 | INFO     | job summary report
[2025-11-20 17:00:34] 2025-11-21 00:59:55,897 | INFO     | --------------------------------------------------
[2025-11-20 17:00:34] 2025-11-21 00:59:55,897 | INFO     | PanDA job id: 6893880788
[2025-11-20 17:00:34] 2025-11-21 00:59:55,897 | INFO     | task id: 47523449
[2025-11-20 17:00:34] 2025-11-21 00:59:55,897 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-20 16:57:47,234 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-20 17:00:34] 2025-11-21 00:59:55,897 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-20 17:00:34] 2025-11-21 00:59:55,897 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 17:00:34] 2025-11-21 00:59:55,898 | INFO     | pilot state: failed 
[2025-11-20 17:00:34] 2025-11-21 00:59:55,898 | INFO     | transexitcode: 65
[2025-11-20 17:00:34] 2025-11-21 00:59:55,898 | INFO     | exeerrorcode: 65
[2025-11-20 17:00:34] 2025-11-21 00:59:55,898 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-20 17:00:34] 2025-11-21 00:59:55,898 | INFO     | exitcode: 65
[2025-11-20 17:00:34] 2025-11-21 00:59:55,898 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-20 17:00:34] 2025-11-21 00:59:55,898 | INFO     | cpuconsumptiontime: 44 s
[2025-11-20 17:00:34] 2025-11-21 00:59:55,898 | INFO     | nevents: 0
[2025-11-20 17:00:34] 2025-11-21 00:59:55,898 | INFO     | neventsw: 0
[2025-11-20 17:00:34] 2025-11-21 00:59:55,898 | INFO     | pid: 3687134
[2025-11-20 17:00:34] 2025-11-21 00:59:55,898 | INFO     | pgrp: 3687134
[2025-11-20 17:00:34] 2025-11-21 00:59:55,898 | INFO     | corecount: 12
[2025-11-20 17:00:34] 2025-11-21 00:59:55,898 | INFO     | event service: False
[2025-11-20 17:00:34] 2025-11-21 00:59:55,898 | INFO     | sizes: {0: 2298582, 1: 2298781, 6: 2299043, 11: 2299071, 71: 2328758, 72: 2328758, 192: 2329052}
[2025-11-20 17:00:34] 2025-11-21 00:59:55,898 | INFO     | --------------------------------------------------
[2025-11-20 17:00:34] 2025-11-21 00:59:55,898 | INFO     | 
[2025-11-20 17:00:34] 2025-11-21 00:59:55,898 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-20 17:00:34] 2025-11-21 00:59:55,913 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 17:00:34] 2025-11-21 00:59:55,913 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 17:00:34] 2025-11-21 00:59:55,913 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 17:00:34] 2025-11-21 00:59:55,913 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 17:00:34] 2025-11-21 00:59:55,913 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 17:00:34] 2025-11-21 00:59:55,914 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 17:00:34] 2025-11-21 00:59:55,914 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 17:00:34] 2025-11-21 00:59:55,914 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 17:00:34] 2025-11-21 00:59:55,914 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 17:00:34] 2025-11-21 00:59:55,914 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 17:00:34] 2025-11-21 00:59:55,914 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 17:00:34] 2025-11-21 00:59:55,914 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 17:00:34] 2025-11-21 00:59:55,914 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 17:00:34] 2025-11-21 00:59:55,914 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 17:00:34] 2025-11-21 00:59:55,914 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 17:00:34] 2025-11-21 00:59:55,914 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 17:00:34] 2025-11-21 00:59:55,914 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 17:00:34] 2025-11-21 00:59:55,914 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 17:00:34] 2025-11-21 00:59:55,914 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 17:00:34] 2025-11-21 00:59:55,914 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 17:00:34] 2025-11-21 00:59:55,914 | INFO     | job 6893880788 has completed (purged errors)
[2025-11-20 17:00:34] 2025-11-21 00:59:55,915 | INFO     | overall cleanup function is called
[2025-11-20 17:00:34] 2025-11-21 00:59:56,922 | INFO     | --- collectZombieJob: --- 10, [3687134]
[2025-11-20 17:00:34] 2025-11-21 00:59:56,922 | INFO     | zombie collector waiting for pid 3687134
[2025-11-20 17:00:34] 2025-11-21 00:59:56,922 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 17:00:34] 2025-11-21 00:59:56,922 | INFO     | collected zombie processes
[2025-11-20 17:00:34] 2025-11-21 00:59:56,922 | INFO     | will attempt to kill all subprocesses of pid=3687134
[2025-11-20 17:00:34] 2025-11-21 00:59:57,086 | INFO     | process IDs to be killed: [3687134] (in reverse order)
[2025-11-20 17:00:34] 2025-11-21 00:59:57,152 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 17:00:34] 2025-11-21 00:59:57,152 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 17:00:34] 2025-11-21 00:59:57,164 | INFO     | did not find any defunct processes belonging to 3687134
[2025-11-20 17:00:34] 2025-11-21 00:59:57,171 | INFO     | did not find any defunct processes belonging to 3687134
[2025-11-20 17:00:34] 2025-11-21 00:59:57,171 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 17:00:34] 2025-11-21 00:59:57,172 | INFO     | ready for new job
[2025-11-20 17:00:34] 2025-11-21 00:59:57,172 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 17:00:34] 2025-11-21 00:59:57,173 | INFO     | ***************************************
[2025-11-20 17:00:34] 2025-11-21 00:59:57,173 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 17:00:34] 2025-11-21 00:59:57,173 | INFO     | ***************************************
[2025-11-20 17:00:34] 2025-11-21 00:59:57,173 | INFO     | 
[2025-11-20 17:00:34] 2025-11-21 00:59:57,175 | INFO     | architecture information:
[2025-11-20 17:00:34] 2025-11-21 00:59:57,178 | INFO     | executing command: cat /etc/os-release
[2025-11-20 17:00:34] 2025-11-21 00:59:57,194 | INFO     | cat /etc/os-release:
[2025-11-20 17:00:34] NAME="CentOS Linux"
[2025-11-20 17:00:34] VERSION="7 (Core)"
[2025-11-20 17:00:34] ID="centos"
[2025-11-20 17:00:34] ID_LIKE="rhel fedora"
[2025-11-20 17:00:34] VERSION_ID="7"
[2025-11-20 17:00:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 17:00:34] ANSI_COLOR="0;31"
[2025-11-20 17:00:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 17:00:34] HOME_URL="https://www.centos.org/"
[2025-11-20 17:00:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 17:00:34] 
[2025-11-20 17:00:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 17:00:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 17:00:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 17:00:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 17:00:34] 
[2025-11-20 17:00:34] 2025-11-21 00:59:57,194 | INFO     | ***************************************
[2025-11-20 17:00:34] 2025-11-21 00:59:57,698 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-20 17:00:34] 2025-11-21 00:59:57,714 | INFO     | sufficient remaining disk space (2105676922880 B)
[2025-11-20 17:00:34] 2025-11-21 00:59:57,714 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 17:00:34] 2025-11-21 00:59:57,714 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 17:00:34] 2025-11-21 00:59:57,714 | INFO     | update_server=False
[2025-11-20 17:00:34] 2025-11-21 00:59:57,714 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 17:00:34] 2025-11-21 00:59:57,715 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 17:00:34] 2025-11-21 00:59:57,741 | INFO     | all data control threads have been joined
[2025-11-20 17:00:34] 2025-11-21 00:59:57,948 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 17:00:34] 2025-11-21 00:59:57,948 | INFO     | aborting loop
[2025-11-20 17:00:34] 2025-11-21 00:59:57,950 | INFO     | all job control threads have been joined
[2025-11-20 17:00:34] 2025-11-21 00:59:58,248 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 17:00:34] 2025-11-21 00:59:58,719 | INFO     | [job] retrieve thread has finished
[2025-11-20 17:00:34] 2025-11-21 00:59:58,721 | INFO     | [job] queue monitor thread has finished
[2025-11-20 17:00:34] 2025-11-21 00:59:58,734 | INFO     | [payload] validate_post thread has finished
[2025-11-20 17:00:34] 2025-11-21 00:59:58,746 | INFO     | [data] control thread has finished
[2025-11-20 17:00:34] 2025-11-21 00:59:58,786 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 17:00:34] 2025-11-21 00:59:58,820 | INFO     | all payload control threads have been joined
[2025-11-20 17:00:34] 2025-11-21 00:59:58,879 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 17:00:34] 2025-11-21 00:59:58,954 | INFO     | [job] job monitor thread has finished
[2025-11-20 17:00:34] 2025-11-21 00:59:58,955 | INFO     | [job] control thread has finished
[2025-11-20 17:00:34] 2025-11-21 00:59:59,001 | INFO     | [data] copytool_in thread has finished
[2025-11-20 17:00:34] 2025-11-21 00:59:59,232 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 17:00:34] 2025-11-21 00:59:59,277 | INFO     | [payload] failed_post thread has finished
[2025-11-20 17:00:34] 2025-11-21 00:59:59,738 | INFO     | [job] validate thread has finished
[2025-11-20 17:00:34] 2025-11-21 00:59:59,825 | INFO     | [payload] control thread has finished
[2025-11-20 17:00:34] 2025-11-21 00:59:59,894 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 17:00:34] 2025-11-21 00:59:59,998 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 17:00:34] 2025-11-21 01:00:00,253 | INFO     | [data] copytool_out thread has finished
[2025-11-20 17:00:34] 2025-11-21 01:00:02,886 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 17:00:34] 2025-11-21 01:00:28,023 | INFO     | [monitor] cgroup control has ended
[2025-11-20 17:00:34] 2025-11-21 01:00:28,508 | INFO     | PID=3680520 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 17:00:34] 2025-11-21 01:00:28,508 | INFO     | .. there are 21 such processes running
[2025-11-20 17:00:34] 2025-11-21 01:00:28,509 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 17:00:34] 2025-11-21 01:00:28,509 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 17:00:34] 2025-11-21 01:00:28,509 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 17:00:34] 2025-11-21 01:00:28,820 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140314716571456)>', '<ExcThread(monitor, started 140313804916480)>']
[2025-11-20 17:00:34] 2025-11-21 01:00:29,514 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 17:00:34] 2025-11-21 01:00:29,514 | INFO     | [monitor] control thread has ended
[2025-11-20 17:00:34] 2025-11-21 01:00:33,845 | INFO     | all workflow threads have been joined
[2025-11-20 17:00:34] 2025-11-21 01:00:33,845 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 17:00:34] 2025-11-21 01:00:33,846 | INFO     | traces error code: 0
[2025-11-20 17:00:34] 2025-11-21 01:00:33,846 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 17:00:34] 2025-11-21 01:00:33,992 [wrapper] ==== pilot stdout END ====
[2025-11-20 17:00:34] 2025-11-21 01:00:33,995 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 17:00:34] 2025-11-21 01:00:33,997 [wrapper] pilotpid: 3680520
[2025-11-20 17:00:34] 2025-11-21 01:00:33,999 [wrapper] Pilot exit status: 0
[2025-11-20 17:00:34] 2025-11-21 01:00:34,008 [wrapper] pandaids: 6893880788
[2025-11-20 17:00:34] 2025-11-21 01:00:34,048 [wrapper] cleanup supervisor_pilot 3680526 3680521
[2025-11-20 17:00:34] 2025-11-21 01:00:34,051 [wrapper] Test setup, not cleaning
[2025-11-20 17:00:34] 2025-11-21 01:00:34,053 [wrapper] apfmon messages muted
[2025-11-20 17:00:34] 2025-11-21 01:00:34,056 [wrapper] ==== wrapper stdout END ====
[2025-11-20 17:00:34] 2025-11-21 01:00:34,060 [wrapper] ==== wrapper stderr END ====
[2025-11-20 17:00:34]  *** Error codes and diagnostics ***
[2025-11-20 17:00:34]     "exeErrorCode": 65,
[2025-11-20 17:00:34]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-20 17:00:34]     "pilotErrorCode": 1305,
[2025-11-20 17:00:34]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-20 17:00:34]  *** Listing of results directory ***
[2025-11-20 17:00:34] total 405480
[2025-11-20 17:00:34] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:10 pilot3.tar.gz
[2025-11-20 17:00:34] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:36 queuedata.json
[2025-11-20 17:00:34] -rwx------. 1 boinc boinc     36292 Nov 20 11:37 runpilot2-wrapper.sh
[2025-11-20 17:00:34] -rw-r--r--. 1 boinc boinc       100 Nov 20 16:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 17:00:34] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 16:56 run_atlas
[2025-11-20 17:00:34] -rw-r--r--. 1 boinc boinc       105 Nov 20 16:56 job.xml
[2025-11-20 17:00:34] -rw-r--r--. 2 boinc boinc 411011301 Nov 20 16:56 EVNT.47493127._000843.pool.root.1
[2025-11-20 17:00:34] -rw-r--r--. 1 boinc boinc      6595 Nov 20 16:56 init_data.xml
[2025-11-20 17:00:34] -rw-r--r--. 2 boinc boinc     15847 Nov 20 16:56 start_atlas.sh
[2025-11-20 17:00:34] drwxrwx--x. 2 boinc boinc      4096 Nov 20 16:56 shared
[2025-11-20 17:00:34] -rw-r--r--. 2 boinc boinc    590100 Nov 20 16:56 input.tar.gz
[2025-11-20 17:00:34] -rw-r--r--. 1 boinc boinc         0 Nov 20 16:56 boinc_lockfile
[2025-11-20 17:00:34] -rw-r--r--. 1 boinc boinc      2785 Nov 20 16:56 pandaJob.out
[2025-11-20 17:00:34] -rw-------. 1 boinc boinc    989817 Nov 20 16:56 agis_schedconf.cvmfs.json
[2025-11-20 17:00:34] -rw-------. 1 boinc boinc   1526164 Nov 20 16:56 agis_ddmendpoints.agis.ALL.json
[2025-11-20 17:00:34] drwx------. 5 boinc boinc      4096 Nov 20 16:56 pilot3
[2025-11-20 17:00:34] -rw-r--r--. 1 boinc boinc       523 Nov 20 16:57 boinc_task_state.xml
[2025-11-20 17:00:34] -rw-------. 1 boinc boinc       953 Nov 20 16:57 memory_monitor_summary.json
[2025-11-20 17:00:34] -rw-------. 1 boinc boinc     47438 Nov 20 16:57 log.47523449._008423.job.log.tgz.1
[2025-11-20 17:00:34] -rw-------. 1 boinc boinc     10327 Nov 20 16:59 heartbeat.json
[2025-11-20 17:00:34] -rw-------. 1 boinc boinc        95 Nov 20 17:00 pilot_heartbeat.json
[2025-11-20 17:00:34] -rw-r--r--. 1 boinc boinc        23 Nov 20 17:00 wrapper_checkpoint.txt
[2025-11-20 17:00:34] -rw-r--r--. 1 boinc boinc      8192 Nov 20 17:00 boinc_mmap_file
[2025-11-20 17:00:34] -rw-------. 1 boinc boinc      4823 Nov 20 17:00 pilotlog.txt
[2025-11-20 17:00:34] -rw-------. 1 boinc boinc     93950 Nov 20 17:00 log.47523449._008423.job.log.1
[2025-11-20 17:00:34] -rw-------. 1 boinc boinc       186 Nov 20 17:00 output.list
[2025-11-20 17:00:34] -rw-r--r--. 1 boinc boinc       620 Nov 20 17:00 runtime_log
[2025-11-20 17:00:34] -rw-------. 1 boinc boinc    163840 Nov 20 17:00 result.tar.gz
[2025-11-20 17:00:34] -rw-r--r--. 1 boinc boinc      8636 Nov 20 17:00 runtime_log.err
[2025-11-20 17:00:34] -rw-------. 1 boinc boinc       645 Nov 20 17:00 g2BNDmLePg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmj1GKDmgrDjQn.diag
[2025-11-20 17:00:34] -rw-r--r--. 1 boinc boinc     22393 Nov 20 17:00 stderr.txt
[2025-11-20 17:00:34] No HITS result produced
[2025-11-20 17:00:34]  *** Contents of shared directory: ***
[2025-11-20 17:00:34] total 402140
[2025-11-20 17:00:34] -rw-r--r--. 2 boinc boinc 411011301 Nov 20 16:56 ATLAS.root_0
[2025-11-20 17:00:34] -rw-r--r--. 2 boinc boinc     15847 Nov 20 16:56 start_atlas.sh
[2025-11-20 17:00:34] -rw-r--r--. 2 boinc boinc    590100 Nov 20 16:56 input.tar.gz
[2025-11-20 17:00:34] -rw-------. 1 boinc boinc    163840 Nov 20 17:00 result.tar.gz
17:00:35 (3676832): run_atlas exited; CPU time 41.526217
17:00:35 (3676832): called boinc_finish(0)

</stderr_txt>
]]>

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