Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:08:48 (817135): wrapper (7.7.26015): starting
03:08:48 (817135): wrapper: running run_atlas (--nthreads 4)
[2025-11-23 03:08:48] Arguments: --nthreads 4
[2025-11-23 03:08:48] Threads: 4
[2025-11-23 03:08:48] Checking for CVMFS
[2025-11-23 03:08:48] No cvmfs_config command found, will try listing directly
[2025-11-23 03:08:48] CVMFS is ok
[2025-11-23 03:08:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 03:08:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 03:08:48] Further information can be found at the LHC@home message board.
[2025-11-23 03:08:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 03:08:48] Checking for apptainer binary...
[2025-11-23 03:08:48] which: no apptainer in ((null))
[2025-11-23 03:08:48] apptainer is not installed, using version from CVMFS
[2025-11-23 03:08:48] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 03:08:49] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot88/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2025-11-23 03:08:49] apptainer works
[2025-11-23 03:08:49] Set ATHENA_PROC_NUMBER=4
[2025-11-23 03:08:49] Set ATHENA_CORE_NUMBER=4
[2025-11-23 03:08:49] Starting ATLAS job with PandaID=6893869748
[2025-11-23 03:08:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot88/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 20:12:14]  *** The last 200 lines of the pilot log: ***
[2025-11-23 20:12:14] 2025-11-23 19:09:40,830 | INFO     | time since job start (61238s) is within the limit (172800.0s)
[2025-11-23 20:12:14] 2025-11-23 19:09:42,243 | INFO     | monitor loop #3959: job 0:6893869748 is in state 'finished'
[2025-11-23 20:12:14] 2025-11-23 19:09:42,243 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 20:12:14] 2025-11-23 19:09:42,325 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 20:12:14] 2025-11-23 19:09:42,352 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2692.7628906249993
[2025-11-23 20:12:14] 2025-11-23 19:09:42,380 | INFO     | using path: /scratch/boinc/var/slot88/slots/0/PanDA_Pilot-6893869748/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 20:12:14] 2025-11-23 19:09:42,381 | INFO     | extracted standard info from prmon json
[2025-11-23 20:12:14] 2025-11-23 19:09:42,381 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 20:12:14] 2025-11-23 19:09:42,381 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 20:12:14] 2025-11-23 19:09:42,398 | INFO     | fitting pss+swap vs Time
[2025-11-23 20:12:14] 2025-11-23 19:09:42,400 | INFO     | sum of square deviations: 313821566491.15936
[2025-11-23 20:12:14] 2025-11-23 19:09:42,427 | INFO     | sum of deviations: 821348934319.2275
[2025-11-23 20:12:14] 2025-11-23 19:09:42,428 | INFO     | mean x: 1763894367.6992033
[2025-11-23 20:12:14] 2025-11-23 19:09:42,428 | INFO     | mean y: 2271001.533864542
[2025-11-23 20:12:14] 2025-11-23 19:09:42,428 | INFO     | intersect: -4614278381.480707
[2025-11-23 20:12:14] 2025-11-23 19:09:42,429 | INFO     | chi2: 3.9769159178625264
[2025-11-23 20:12:14] 2025-11-23 19:09:42,431 | INFO     | sum of square deviations: 309156405135.9603
[2025-11-23 20:12:14] 2025-11-23 19:09:42,463 | INFO     | sum of deviations: 1028229078455.6039
[2025-11-23 20:12:14] 2025-11-23 19:09:42,463 | INFO     | mean x: 1763894215.2002003
[2025-11-23 20:12:14] 2025-11-23 19:09:42,463 | INFO     | mean y: 2277757.976976977
[2025-11-23 20:12:14] 2025-11-23 19:09:42,463 | INFO     | intersect: -5864291050.748987
[2025-11-23 20:12:14] 2025-11-23 19:09:42,464 | INFO     | chi2: 1.8788942111159375
[2025-11-23 20:12:14] 2025-11-23 19:09:42,464 | INFO     | current chi2=1.8788942111159375 (change=52.754992815493395 %)
[2025-11-23 20:12:14] 2025-11-23 19:09:42,465 | INFO     | sum of square deviations: 304537709768.2579
[2025-11-23 20:12:14] 2025-11-23 19:09:42,487 | INFO     | sum of deviations: 1026696380668.8468
[2025-11-23 20:12:14] 2025-11-23 19:09:42,488 | INFO     | mean x: 1763894062.7012072
[2025-11-23 20:12:14] 2025-11-23 19:09:42,488 | INFO     | mean y: 2277706.0432595573
[2025-11-23 20:12:14] 2025-11-23 19:09:42,488 | INFO     | intersect: -5944386999.08206
[2025-11-23 20:12:14] 2025-11-23 19:09:42,489 | INFO     | chi2: 1.8604459291201285
[2025-11-23 20:12:14] 2025-11-23 19:09:42,489 | INFO     | current chi2=1.8604459291201285 (change=0.9818691167743766 %)
[2025-11-23 20:12:14] 2025-11-23 19:09:42,489 | INFO     | right removable region: 993
[2025-11-23 20:12:14] 2025-11-23 19:09:42,491 | INFO     | sum of square deviations: 309156283135.9601
[2025-11-23 20:12:14] 2025-11-23 19:09:42,515 | INFO     | sum of deviations: 657141096440.78
[2025-11-23 20:12:14] 2025-11-23 19:09:42,515 | INFO     | mean x: 1763894520.2002003
[2025-11-23 20:12:14] 2025-11-23 19:09:42,515 | INFO     | mean y: 2276358.096096096
[2025-11-23 20:12:14] 2025-11-23 19:09:42,515 | INFO     | intersect: -3747049281.5205655
[2025-11-23 20:12:14] 2025-11-23 19:09:42,516 | INFO     | chi2: 2.271246050108941
[2025-11-23 20:12:14] 2025-11-23 19:09:42,517 | INFO     | current chi2=2.271246050108941 (change=42.88926150267547 %)
[2025-11-23 20:12:14] 2025-11-23 19:09:42,518 | INFO     | sum of square deviations: 304537465768.2578
[2025-11-23 20:12:14] 2025-11-23 19:09:42,541 | INFO     | sum of deviations: 621365427516.8054
[2025-11-23 20:12:14] 2025-11-23 19:09:42,541 | INFO     | mean x: 1763894672.7012072
[2025-11-23 20:12:14] 2025-11-23 19:09:42,542 | INFO     | mean y: 2277538.9959758553
[2025-11-23 20:12:14] 2025-11-23 19:09:42,542 | INFO     | intersect: -3596698910.8561277
[2025-11-23 20:12:14] 2025-11-23 19:09:42,543 | INFO     | chi2: 2.2437221242814065
[2025-11-23 20:12:14] 2025-11-23 19:09:42,543 | INFO     | current chi2=2.2437221242814065 (change=1.2118425401868902 %)
[2025-11-23 20:12:14] 2025-11-23 19:09:42,543 | INFO     | left removable region: 20
[2025-11-23 20:12:14] 2025-11-23 19:09:42,544 | INFO     | sum of square deviations: 285640861336.8902
[2025-11-23 20:12:14] 2025-11-23 19:09:42,567 | INFO     | sum of deviations: 765106972925.0981
[2025-11-23 20:12:14] 2025-11-23 19:09:42,567 | INFO     | mean x: 1763894642.20555
[2025-11-23 20:12:14] 2025-11-23 19:09:42,568 | INFO     | mean y: 2286294.574511819
[2025-11-23 20:12:14] 2025-11-23 19:09:42,568 | INFO     | intersect: -4722416200.510677
[2025-11-23 20:12:14] 2025-11-23 19:09:42,569 | INFO     | chi2: 0.0913859493365406
[2025-11-23 20:12:14] 2025-11-23 19:09:42,569 | INFO     | current memory leak: 2.68 B/s (using 973 data points, chi2=0.09)
[2025-11-23 20:12:14] 2025-11-23 19:09:42,570 | INFO     | could have reported an average CPU frequency of 2699 MHz (37 samples)
[2025-11-23 20:12:14] 2025-11-23 19:09:42,570 | INFO     | ..............................
[2025-11-23 20:12:14] 2025-11-23 19:09:42,570 | INFO     | . Timing measurements:
[2025-11-23 20:12:14] 2025-11-23 19:09:42,571 | INFO     | . get job = 0 s
[2025-11-23 20:12:14] 2025-11-23 19:09:42,571 | INFO     | . initial setup = 1 s
[2025-11-23 20:12:14] 2025-11-23 19:09:42,571 | INFO     | . payload setup = 8 s
[2025-11-23 20:12:14] 2025-11-23 19:09:42,571 | INFO     | . stage-in = 0 s
[2025-11-23 20:12:14] 2025-11-23 19:09:42,571 | INFO     | . payload execution = 61199 s
[2025-11-23 20:12:14] 2025-11-23 19:09:42,571 | INFO     | . stage-out = 2 s
[2025-11-23 20:12:14] 2025-11-23 19:09:42,571 | INFO     | . log creation = 0 s
[2025-11-23 20:12:14] 2025-11-23 19:09:42,571 | INFO     | ..............................
[2025-11-23 20:12:14] 2025-11-23 19:09:42,673 | INFO     | 
[2025-11-23 20:12:14] 2025-11-23 19:09:42,673 | INFO     | job summary report
[2025-11-23 20:12:14] 2025-11-23 19:09:42,674 | INFO     | --------------------------------------------------
[2025-11-23 20:12:14] 2025-11-23 19:09:42,674 | INFO     | PanDA job id: 6893869748
[2025-11-23 20:12:14] 2025-11-23 19:09:42,674 | INFO     | task id: 47523449
[2025-11-23 20:12:14] 2025-11-23 19:09:42,674 | INFO     | errors: (none)
[2025-11-23 20:12:14] 2025-11-23 19:09:42,674 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 20:12:14] 2025-11-23 19:09:42,674 | INFO     | pilot state: finished 
[2025-11-23 20:12:14] 2025-11-23 19:09:42,674 | INFO     | transexitcode: 0
[2025-11-23 20:12:14] 2025-11-23 19:09:42,674 | INFO     | exeerrorcode: 0
[2025-11-23 20:12:14] 2025-11-23 19:09:42,674 | INFO     | exeerrordiag: 
[2025-11-23 20:12:14] 2025-11-23 19:09:42,674 | INFO     | exitcode: 0
[2025-11-23 20:12:14] 2025-11-23 19:09:42,674 | INFO     | exitmsg: OK
[2025-11-23 20:12:14] 2025-11-23 19:09:42,675 | INFO     | cpuconsumptiontime: 232288 s
[2025-11-23 20:12:14] 2025-11-23 19:09:42,675 | INFO     | nevents: 1000
[2025-11-23 20:12:14] 2025-11-23 19:09:42,675 | INFO     | neventsw: 0
[2025-11-23 20:12:14] 2025-11-23 19:09:42,675 | INFO     | pid: 829169
[2025-11-23 20:12:14] 2025-11-23 19:09:42,675 | INFO     | pgrp: 829169
[2025-11-23 20:12:14] 2025-11-23 19:09:42,675 | INFO     | corecount: 4
[2025-11-23 20:12:14] 2025-11-23 19:09:42,675 | INFO     | event service: False
[2025-11-23 20:12:14] 2025-11-23 19:09:42,675 | INFO     | sizes: {0: 2298817, 7: 2299079, 11: 2299107, 61211: 2352769, 61214: 2361841, 61222: 2362031}
[2025-11-23 20:12:14] 2025-11-23 19:09:42,675 | INFO     | --------------------------------------------------
[2025-11-23 20:12:14] 2025-11-23 19:09:42,675 | INFO     | 
[2025-11-23 20:12:14] 2025-11-23 19:09:42,676 | INFO     | executing command: ls -lF /scratch/boinc/var/slot88/slots/0
[2025-11-23 20:12:14] 2025-11-23 19:09:42,705 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 20:12:14] 2025-11-23 19:09:42,706 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 20:12:14] 2025-11-23 19:09:42,706 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 20:12:14] 2025-11-23 19:09:42,706 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 20:12:14] 2025-11-23 19:09:42,706 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 20:12:14] 2025-11-23 19:09:42,706 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 20:12:14] 2025-11-23 19:09:42,706 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 20:12:14] 2025-11-23 19:09:42,706 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 20:12:14] 2025-11-23 19:09:42,706 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 20:12:14] 2025-11-23 19:09:42,706 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 20:12:14] 2025-11-23 19:09:42,707 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 20:12:14] 2025-11-23 19:09:42,707 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 20:12:14] 2025-11-23 19:09:42,707 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 20:12:14] 2025-11-23 19:09:42,707 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 20:12:14] 2025-11-23 19:09:42,707 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 20:12:14] 2025-11-23 19:09:42,707 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 20:12:14] 2025-11-23 19:09:42,707 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 20:12:14] 2025-11-23 19:09:42,707 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 20:12:14] 2025-11-23 19:09:42,707 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 20:12:14] 2025-11-23 19:09:42,707 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 20:12:14] 2025-11-23 19:09:42,707 | INFO     | job 6893869748 has completed (purged errors)
[2025-11-23 20:12:14] 2025-11-23 19:09:42,708 | INFO     | overall cleanup function is called
[2025-11-23 20:12:14] 2025-11-23 19:09:43,724 | INFO     | --- collectZombieJob: --- 10, [829169]
[2025-11-23 20:12:14] 2025-11-23 19:09:43,725 | INFO     | zombie collector waiting for pid 829169
[2025-11-23 20:12:14] 2025-11-23 19:09:43,725 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 20:12:14] 2025-11-23 19:09:43,725 | INFO     | collected zombie processes
[2025-11-23 20:12:14] 2025-11-23 19:09:43,725 | INFO     | will attempt to kill all subprocesses of pid=829169
[2025-11-23 20:12:14] 2025-11-23 19:09:44,482 | INFO     | process IDs to be killed: [829169] (in reverse order)
[2025-11-23 20:12:14] 2025-11-23 19:09:44,744 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 20:12:14] 2025-11-23 19:09:44,745 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 20:12:14] 2025-11-23 19:09:44,777 | INFO     | did not find any defunct processes belonging to 829169
[2025-11-23 20:12:14] 2025-11-23 19:09:44,806 | INFO     | did not find any defunct processes belonging to 829169
[2025-11-23 20:12:14] 2025-11-23 19:09:44,808 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 20:12:14] 2025-11-23 19:09:44,808 | INFO     | ready for new job
[2025-11-23 20:12:14] 2025-11-23 19:09:44,808 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 20:12:14] 2025-11-23 19:09:44,814 | INFO     | ***************************************
[2025-11-23 20:12:14] 2025-11-23 19:09:44,815 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 20:12:14] 2025-11-23 19:09:44,815 | INFO     | ***************************************
[2025-11-23 20:12:14] 2025-11-23 19:09:44,815 | INFO     | 
[2025-11-23 20:12:14] 2025-11-23 19:09:44,823 | INFO     | architecture information:
[2025-11-23 20:12:14] 2025-11-23 19:09:44,823 | INFO     | executing command: cat /etc/os-release
[2025-11-23 20:12:14] 2025-11-23 19:09:44,846 | INFO     | cat /etc/os-release:
[2025-11-23 20:12:14] NAME="CentOS Linux"
[2025-11-23 20:12:14] VERSION="7 (Core)"
[2025-11-23 20:12:14] ID="centos"
[2025-11-23 20:12:14] ID_LIKE="rhel fedora"
[2025-11-23 20:12:14] VERSION_ID="7"
[2025-11-23 20:12:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 20:12:14] ANSI_COLOR="0;31"
[2025-11-23 20:12:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 20:12:14] HOME_URL="https://www.centos.org/"
[2025-11-23 20:12:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 20:12:14] 
[2025-11-23 20:12:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 20:12:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 20:12:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 20:12:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 20:12:14] 
[2025-11-23 20:12:14] 2025-11-23 19:09:44,846 | INFO     | ***************************************
[2025-11-23 20:12:14] 2025-11-23 19:09:45,349 | INFO     | executing command: df -mP /scratch/boinc/var/slot88/slots/0
[2025-11-23 20:12:14] 2025-11-23 19:09:45,374 | INFO     | sufficient remaining disk space (3291352137728 B)
[2025-11-23 20:12:14] 2025-11-23 19:09:45,375 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 20:12:14] 2025-11-23 19:09:45,375 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 20:12:14] 2025-11-23 19:09:45,375 | INFO     | update_server=False
[2025-11-23 20:12:14] 2025-11-23 19:09:45,375 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 20:12:14] 2025-11-23 19:09:45,375 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 20:12:14] 2025-11-23 19:09:45,421 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 20:12:14] 2025-11-23 19:09:45,751 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 20:12:14] 2025-11-23 19:09:45,752 | INFO     | aborting loop
[2025-11-23 20:12:14] 2025-11-23 19:09:46,376 | INFO     | [job] retrieve thread has finished
[2025-11-23 20:12:14] 2025-11-23 19:09:46,434 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 20:12:14] 2025-11-23 19:09:46,446 | INFO     | all data control threads have been joined
[2025-11-23 20:12:14] 2025-11-23 19:09:46,518 | INFO     | [job] validate thread has finished
[2025-11-23 20:12:14] 2025-11-23 19:09:46,546 | INFO     | all job control threads have been joined
[2025-11-23 20:12:14] 2025-11-23 19:09:46,748 | INFO     | all payload control threads have been joined
[2025-11-23 20:12:14] 2025-11-23 19:09:46,755 | INFO     | [job] job monitor thread has finished
[2025-11-23 20:12:14] 2025-11-23 19:09:47,339 | INFO     | [payload] validate_post thread has finished
[2025-11-23 20:12:14] 2025-11-23 19:09:47,381 | INFO     | [data] copytool_out thread has finished
[2025-11-23 20:12:14] 2025-11-23 19:09:47,452 | INFO     | [data] control thread has finished
[2025-11-23 20:12:14] 2025-11-23 19:09:47,453 | INFO     | [data] copytool_in thread has finished
[2025-11-23 20:12:14] 2025-11-23 19:09:47,463 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 20:12:14] 2025-11-23 19:09:47,554 | INFO     | [job] control thread has finished
[2025-11-23 20:12:14] 2025-11-23 19:09:47,684 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 20:12:14] 2025-11-23 19:09:47,753 | INFO     | [payload] control thread has finished
[2025-11-23 20:12:14] 2025-11-23 19:09:47,761 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 20:12:14] 2025-11-23 19:09:47,776 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 20:12:14] 2025-11-23 19:09:47,837 | INFO     | [payload] failed_post thread has finished
[2025-11-23 20:12:14] 2025-11-23 19:09:48,689 | INFO     | [job] queue monitor thread has finished
[2025-11-23 20:12:14] 2025-11-23 19:09:49,428 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 20:12:14] 2025-11-23 19:10:15,030 | INFO     | PID=821167 has CPU usage=10.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 20:12:14] 2025-11-23 19:10:15,030 | INFO     | .. there are 9 such processes running
[2025-11-23 20:12:14] 2025-11-23 19:10:15,031 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 20:12:14] 2025-11-23 19:10:15,031 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 20:12:14] 2025-11-23 19:10:15,031 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 20:12:14] 2025-11-23 19:10:45,097 | INFO     | [monitor] cgroup control has ended
[2025-11-23 20:12:14] 2025-11-23 19:10:45,708 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22515280955200)>', '<ExcThread(monitor, started 22515044812544)>']
[2025-11-23 20:12:14] 2025-11-23 19:10:46,195 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 20:12:14] 2025-11-23 19:10:46,196 | INFO     | [monitor] control thread has ended
[2025-11-23 20:12:14] 2025-11-23 19:10:50,732 | INFO     | all workflow threads have been joined
[2025-11-23 20:12:14] 2025-11-23 19:10:50,733 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 20:12:14] 2025-11-23 19:10:50,733 | INFO     | traces error code: 0
[2025-11-23 20:12:14] 2025-11-23 19:10:50,733 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 20:12:14] 2025-11-23 19:10:50,929 [wrapper] ==== pilot stdout END ====
[2025-11-23 20:12:14] 2025-11-23 19:10:50,934 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 20:12:14] 2025-11-23 19:10:50,937 [wrapper] pilotpid: 821167
[2025-11-23 20:12:14] 2025-11-23 19:10:50,941 [wrapper] Pilot exit status: 0
[2025-11-23 20:12:14] 2025-11-23 19:10:50,955 [wrapper] pandaids: 6893869748
[2025-11-23 20:12:14] 2025-11-23 19:10:51,143 [wrapper] cleanup supervisor_pilot 2773115 821168
[2025-11-23 20:12:14] 2025-11-23 19:10:51,148 [wrapper] Test setup, not cleaning
[2025-11-23 20:12:14] 2025-11-23 19:10:51,152 [wrapper] apfmon messages muted
[2025-11-23 20:12:14] 2025-11-23 19:10:51,155 [wrapper] ==== wrapper stdout END ====
[2025-11-23 20:12:14] 2025-11-23 19:10:51,159 [wrapper] ==== wrapper stderr END ====
[2025-11-23 20:12:14]  *** Error codes and diagnostics ***
[2025-11-23 20:12:14]     "exeErrorCode": 0,
[2025-11-23 20:12:14]     "exeErrorDiag": "",
[2025-11-23 20:12:14]     "pilotErrorCode": 0,
[2025-11-23 20:12:14]     "pilotErrorDiag": "",
[2025-11-23 20:12:14]  *** Listing of results directory ***
[2025-11-23 20:12:14] total 1322004
[2025-11-23 20:12:14] -rw-r--r-- 1 boinc boinc    576529 Nov 20 15:06 pilot3.tar.gz
[2025-11-23 20:12:14] -rw-r--r-- 1 boinc boinc      5112 Nov 20 15:43 queuedata.json
[2025-11-23 20:12:14] -rwx------ 1 boinc boinc     36292 Nov 20 15:44 runpilot2-wrapper.sh
[2025-11-23 20:12:14] -rw-r--r-- 1 boinc boinc       100 Nov 23 03:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 20:12:14] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 03:08 run_atlas
[2025-11-23 20:12:14] -rw-r--r-- 1 boinc boinc       105 Nov 23 03:08 job.xml
[2025-11-23 20:12:14] -rw-r--r-- 1 boinc boinc      6683 Nov 23 03:08 init_data.xml
[2025-11-23 20:12:14] -rw-r--r-- 2 boinc boinc 409985768 Nov 23 03:08 EVNT.47493127._000638.pool.root.1
[2025-11-23 20:12:14] -rw-r--r-- 2 boinc boinc     15847 Nov 23 03:08 start_atlas.sh
[2025-11-23 20:12:14] drwxrwx--x 2 boinc boinc      4096 Nov 23 03:08 shared
[2025-11-23 20:12:14] -rw-r--r-- 2 boinc boinc    590098 Nov 23 03:08 input.tar.gz
[2025-11-23 20:12:14] -rw-r--r-- 1 boinc boinc         0 Nov 23 03:08 boinc_lockfile
[2025-11-23 20:12:14] -rw-r--r-- 1 boinc boinc      2785 Nov 23 03:08 pandaJob.out
[2025-11-23 20:12:14] -rw------- 1 boinc boinc    989784 Nov 23 03:09 agis_schedconf.cvmfs.json
[2025-11-23 20:12:14] drwx------ 5 boinc boinc      4096 Nov 23 03:09 pilot3
[2025-11-23 20:12:14] -rw-r--r-- 1 boinc boinc       531 Nov 23 20:03 boinc_task_state.xml
[2025-11-23 20:12:14] -rw------- 1 boinc boinc 919975228 Nov 23 20:08 HITS.47523449._006377.pool.root.1
[2025-11-23 20:12:14] -rw------- 1 boinc boinc      1039 Nov 23 20:09 memory_monitor_summary.json
[2025-11-23 20:12:14] -rw------- 1 boinc boinc   1526164 Nov 23 20:09 agis_ddmendpoints.agis.ALL.json
[2025-11-23 20:12:14] -rw------- 1 boinc boinc   1712944 Nov 23 20:09 log.47523449._006377.job.log.tgz.1
[2025-11-23 20:12:14] -rw------- 1 boinc boinc      7923 Nov 23 20:09 heartbeat.json
[2025-11-23 20:12:14] -rw------- 1 boinc boinc        95 Nov 23 20:10 pilot_heartbeat.json
[2025-11-23 20:12:14] -rw------- 1 boinc boinc      4834 Nov 23 20:10 pilotlog.txt
[2025-11-23 20:12:14] -rw------- 1 boinc boinc   8211198 Nov 23 20:10 log.47523449._006377.job.log.1
[2025-11-23 20:12:14] -rw------- 1 boinc boinc       353 Nov 23 20:10 output.list
[2025-11-23 20:12:14] -rw-r--r-- 1 boinc boinc       620 Nov 23 20:10 runtime_log
[2025-11-23 20:12:14] -rw------- 1 boinc boinc   9943040 Nov 23 20:10 result.tar.gz
[2025-11-23 20:12:14] -rw-r--r-- 1 boinc boinc      9206 Nov 23 20:10 runtime_log.err
[2025-11-23 20:12:14] -rw------- 1 boinc boinc       671 Nov 23 20:10 SMqNDmR4Kg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm57HKDmtKslLm.diag
[2025-11-23 20:12:14] -rw-r--r-- 1 boinc boinc        28 Nov 23 20:12 wrapper_checkpoint.txt
[2025-11-23 20:12:14] -rw-r--r-- 1 boinc boinc      8192 Nov 23 20:12 boinc_mmap_file
[2025-11-23 20:12:14] -rw-r--r-- 1 boinc boinc     21081 Nov 23 20:12 stderr.txt
[2025-11-23 20:12:14] HITS file was successfully produced:
[2025-11-23 20:12:14] -rw------- 1 boinc boinc 919975228 Nov 23 20:08 shared/HITS.pool.root.1
[2025-11-23 20:12:14]  *** Contents of shared directory: ***
[2025-11-23 20:12:14] total 1309112
[2025-11-23 20:12:14] -rw-r--r-- 2 boinc boinc 409985768 Nov 23 03:08 ATLAS.root_0
[2025-11-23 20:12:14] -rw-r--r-- 2 boinc boinc     15847 Nov 23 03:08 start_atlas.sh
[2025-11-23 20:12:14] -rw-r--r-- 2 boinc boinc    590098 Nov 23 03:08 input.tar.gz
[2025-11-23 20:12:14] -rw------- 1 boinc boinc 919975228 Nov 23 20:08 HITS.pool.root.1
[2025-11-23 20:12:14] -rw------- 1 boinc boinc   9943040 Nov 23 20:10 result.tar.gz
20:12:15 (817135): run_atlas exited; CPU time 235047.574216
20:12:15 (817135): called boinc_finish(0)

</stderr_txt>
]]>

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