Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:47:52 (3084115): wrapper (7.7.26015): starting
21:47:52 (3084115): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 21:47:52] Arguments: --nthreads 8
[2025-11-20 21:47:52] Threads: 8
[2025-11-20 21:47:52] Checking for CVMFS
[2025-11-20 21:47:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 21:47:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 21:47:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 21:47:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 21:47:53] 2.13.2.0 6383 26568 284060 153104 1 508 36691829 40960000 7568 16776704 0 21400002 99.660 14321793 32302 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 21:47:53] CVMFS is ok
[2025-11-20 21:47:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 21:47:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 21:47:53] Further information can be found at the LHC@home message board.
[2025-11-20 21:47:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 21:47:53] Checking for apptainer binary...
[2025-11-20 21:47:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 21:47:53] Running /usr/bin/apptainer --version
[2025-11-20 21:47:53] apptainer version 1.4.4-1.el9
[2025-11-20 21:47:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 21:47:53] c-210-37-2.aglt2.org
[2025-11-20 21:47:53] apptainer works
[2025-11-20 21:47:53] Set ATHENA_PROC_NUMBER=8
[2025-11-20 21:47:53] Set ATHENA_CORE_NUMBER=8
[2025-11-20 21:47:53] Starting ATLAS job with PandaID=6893850457
[2025-11-20 21:47:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:40:07 (3084115): BOINC client no longer exists - exiting
22:40:07 (3084115): timer handler: client dead, exiting
22:46:16 (3271544): wrapper (7.7.26015): starting
22:46:16 (3271544): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 22:46:16] Arguments: --nthreads 8
[2025-11-20 22:46:16] Threads: 8
[2025-11-20 22:46:16] This job has been restarted, cleaning up previous attempt
[2025-11-20 22:46:16] Checking for CVMFS
[2025-11-20 22:46:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 22:46:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 22:46:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 22:46:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 22:46:17] 2.13.2.0 6383 26626 276660 153106 3 343 40318707 40960000 6930 16776704 0 21645759 99.660 17437691 36982 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 22:46:17] CVMFS is ok
[2025-11-20 22:46:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 22:46:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 22:46:17] Further information can be found at the LHC@home message board.
[2025-11-20 22:46:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 22:46:17] Checking for apptainer binary...
[2025-11-20 22:46:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 22:46:17] Running /usr/bin/apptainer --version
[2025-11-20 22:46:17] apptainer version 1.4.4-1.el9
[2025-11-20 22:46:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 22:46:17] c-210-37-2.aglt2.org
[2025-11-20 22:46:17] apptainer works
[2025-11-20 22:46:17] Set ATHENA_PROC_NUMBER=8
[2025-11-20 22:46:17] Set ATHENA_CORE_NUMBER=8
[2025-11-20 22:46:17] Starting ATLAS job with PandaID=6893850457
[2025-11-20 22:46:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 08:56:37]  *** The last 200 lines of the pilot log: ***
[2025-11-21 08:56:37] 2025-11-21 13:55:48,230 | INFO     | monitor loop #2563: job 0:6893850457 is in state 'finished'
[2025-11-21 08:56:37] 2025-11-21 13:55:48,230 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 08:56:37] 2025-11-21 13:55:48,339 | INFO     | time since job start (36560s) is within the limit (172800.0s)
[2025-11-21 08:56:37] 2025-11-21 13:55:49,060 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-21 08:56:37] 2025-11-21 13:55:49,064 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3221.219071428571
[2025-11-21 08:56:37] 2025-11-21 13:55:49,073 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6893850457/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 08:56:37] 2025-11-21 13:55:49,073 | INFO     | extracted standard info from prmon json
[2025-11-21 08:56:37] 2025-11-21 13:55:49,073 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 08:56:37] 2025-11-21 13:55:49,073 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 08:56:37] 2025-11-21 13:55:49,082 | INFO     | fitting pss+swap vs Time
[2025-11-21 08:56:37] 2025-11-21 13:55:49,083 | INFO     | sum of square deviations: 66632607181.32875
[2025-11-21 08:56:37] 2025-11-21 13:55:49,089 | INFO     | sum of deviations: 923140418251.8146
[2025-11-21 08:56:37] 2025-11-21 13:55:49,090 | INFO     | mean x: 1763715058.066778
[2025-11-21 08:56:37] 2025-11-21 13:55:49,090 | INFO     | mean y: 2843367.779632721
[2025-11-21 08:56:37] 2025-11-21 13:55:49,090 | INFO     | intersect: -24431990045.687904
[2025-11-21 08:56:37] 2025-11-21 13:55:49,091 | INFO     | chi2: 4.545766490140845
[2025-11-21 08:56:37] 2025-11-21 13:55:49,091 | INFO     | sum of square deviations: 64977822203.09091
[2025-11-21 08:56:37] 2025-11-21 13:55:49,098 | INFO     | sum of deviations: 1076749519426.6052
[2025-11-21 08:56:37] 2025-11-21 13:55:49,098 | INFO     | mean x: 1763714905.5757575
[2025-11-21 08:56:37] 2025-11-21 13:55:49,098 | INFO     | mean y: 2857508.708754209
[2025-11-21 08:56:37] 2025-11-21 13:55:49,098 | INFO     | intersect: -29223717230.10883
[2025-11-21 08:56:37] 2025-11-21 13:55:49,099 | INFO     | chi2: 2.397720916105329
[2025-11-21 08:56:37] 2025-11-21 13:55:49,099 | INFO     | current chi2=2.397720916105329 (change=47.253759705746816 %)
[2025-11-21 08:56:37] 2025-11-21 13:55:49,099 | INFO     | sum of square deviations: 63350665649.755486
[2025-11-21 08:56:37] 2025-11-21 13:55:49,106 | INFO     | sum of deviations: 1104958789660.1345
[2025-11-21 08:56:37] 2025-11-21 13:55:49,106 | INFO     | mean x: 1763714753.0848897
[2025-11-21 08:56:37] 2025-11-21 13:55:49,106 | INFO     | mean y: 2860130.037351443
[2025-11-21 08:56:37] 2025-11-21 13:55:49,106 | INFO     | intersect: -30759754577.89389
[2025-11-21 08:56:37] 2025-11-21 13:55:49,107 | INFO     | chi2: 2.0447361365434906
[2025-11-21 08:56:37] 2025-11-21 13:55:49,107 | INFO     | current chi2=2.0447361365434906 (change=14.72167912415759 %)
[2025-11-21 08:56:37] 2025-11-21 13:55:49,107 | INFO     | right removable region: 588
[2025-11-21 08:56:37] 2025-11-21 13:55:49,108 | INFO     | sum of square deviations: 64977795424.437706
[2025-11-21 08:56:37] 2025-11-21 13:55:49,114 | INFO     | sum of deviations: 779214108198.3037
[2025-11-21 08:56:37] 2025-11-21 13:55:49,114 | INFO     | mean x: 1763715210.5589225
[2025-11-21 08:56:37] 2025-11-21 13:55:49,114 | INFO     | mean y: 2856595.8484848486
[2025-11-21 08:56:37] 2025-11-21 13:55:49,114 | INFO     | intersect: -21147626672.08007
[2025-11-21 08:56:37] 2025-11-21 13:55:49,115 | INFO     | chi2: 2.675054505055984
[2025-11-21 08:56:37] 2025-11-21 13:55:49,115 | INFO     | current chi2=2.675054505055984 (change=41.15283944175714 %)
[2025-11-21 08:56:37] 2025-11-21 13:55:49,116 | INFO     | sum of square deviations: 63350505895.151215
[2025-11-21 08:56:37] 2025-11-21 13:55:49,122 | INFO     | sum of deviations: 729492202235.399
[2025-11-21 08:56:37] 2025-11-21 13:55:49,122 | INFO     | mean x: 1763715363.0560272
[2025-11-21 08:56:37] 2025-11-21 13:55:49,122 | INFO     | mean y: 2861254.5636672326
[2025-11-21 08:56:37] 2025-11-21 13:55:49,122 | INFO     | intersect: -20306630929.15422
[2025-11-21 08:56:37] 2025-11-21 13:55:49,123 | INFO     | chi2: 2.604138048757089
[2025-11-21 08:56:37] 2025-11-21 13:55:49,123 | INFO     | current chi2=2.604138048757089 (change=2.651028461844778 %)
[2025-11-21 08:56:37] 2025-11-21 13:55:49,123 | INFO     | left removable region: 20
[2025-11-21 08:56:37] 2025-11-21 13:55:49,124 | INFO     | sum of square deviations: 56813177772.98658
[2025-11-21 08:56:37] 2025-11-21 13:55:49,130 | INFO     | sum of deviations: 829419803246.0634
[2025-11-21 08:56:37] 2025-11-21 13:55:49,130 | INFO     | mean x: 1763715332.5422535
[2025-11-21 08:56:37] 2025-11-21 13:55:49,130 | INFO     | mean y: 2885890.9348591547
[2025-11-21 08:56:37] 2025-11-21 13:55:49,130 | INFO     | intersect: -25745725284.17915
[2025-11-21 08:56:37] 2025-11-21 13:55:49,131 | INFO     | chi2: 0.03890882979807398
[2025-11-21 08:56:37] 2025-11-21 13:55:49,131 | INFO     | current memory leak: 14.60 B/s (using 568 data points, chi2=0.04)
[2025-11-21 08:56:37] 2025-11-21 13:55:49,132 | INFO     | could have reported an average CPU frequency of 3095 MHz (24 samples)
[2025-11-21 08:56:37] 2025-11-21 13:55:49,132 | INFO     | ..............................
[2025-11-21 08:56:37] 2025-11-21 13:55:49,132 | INFO     | . Timing measurements:
[2025-11-21 08:56:37] 2025-11-21 13:55:49,132 | INFO     | . get job = 0 s
[2025-11-21 08:56:37] 2025-11-21 13:55:49,132 | INFO     | . initial setup = 1 s
[2025-11-21 08:56:37] 2025-11-21 13:55:49,132 | INFO     | . payload setup = 6 s
[2025-11-21 08:56:37] 2025-11-21 13:55:49,132 | INFO     | . stage-in = 0 s
[2025-11-21 08:56:37] 2025-11-21 13:55:49,132 | INFO     | . payload execution = 36525 s
[2025-11-21 08:56:37] 2025-11-21 13:55:49,132 | INFO     | . stage-out = 3 s
[2025-11-21 08:56:37] 2025-11-21 13:55:49,132 | INFO     | . log creation = 0 s
[2025-11-21 08:56:37] 2025-11-21 13:55:49,132 | INFO     | ..............................
[2025-11-21 08:56:37] 2025-11-21 13:55:49,211 | INFO     | 
[2025-11-21 08:56:37] 2025-11-21 13:55:49,211 | INFO     | job summary report
[2025-11-21 08:56:37] 2025-11-21 13:55:49,212 | INFO     | --------------------------------------------------
[2025-11-21 08:56:37] 2025-11-21 13:55:49,212 | INFO     | PanDA job id: 6893850457
[2025-11-21 08:56:37] 2025-11-21 13:55:49,212 | INFO     | task id: 47523449
[2025-11-21 08:56:37] 2025-11-21 13:55:49,212 | INFO     | errors: (none)
[2025-11-21 08:56:37] 2025-11-21 13:55:49,212 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 08:56:37] 2025-11-21 13:55:49,212 | INFO     | pilot state: finished 
[2025-11-21 08:56:37] 2025-11-21 13:55:49,212 | INFO     | transexitcode: 0
[2025-11-21 08:56:37] 2025-11-21 13:55:49,212 | INFO     | exeerrorcode: 0
[2025-11-21 08:56:37] 2025-11-21 13:55:49,212 | INFO     | exeerrordiag: 
[2025-11-21 08:56:37] 2025-11-21 13:55:49,212 | INFO     | exitcode: 0
[2025-11-21 08:56:37] 2025-11-21 13:55:49,212 | INFO     | exitmsg: OK
[2025-11-21 08:56:37] 2025-11-21 13:55:49,212 | INFO     | cpuconsumptiontime: 219825 s
[2025-11-21 08:56:37] 2025-11-21 13:55:49,212 | INFO     | nevents: 1000
[2025-11-21 08:56:37] 2025-11-21 13:55:49,212 | INFO     | neventsw: 0
[2025-11-21 08:56:37] 2025-11-21 13:55:49,212 | INFO     | pid: 3331299
[2025-11-21 08:56:37] 2025-11-21 13:55:49,213 | INFO     | pgrp: 3331299
[2025-11-21 08:56:37] 2025-11-21 13:55:49,213 | INFO     | corecount: 8
[2025-11-21 08:56:37] 2025-11-21 13:55:49,213 | INFO     | event service: False
[2025-11-21 08:56:37] 2025-11-21 13:55:49,213 | INFO     | sizes: {0: 2298630, 1: 2298829, 5: 2299091, 11: 2299147, 36535: 2341499, 36538: 2350493, 36539: 2350677, 36544: 2350951}
[2025-11-21 08:56:37] 2025-11-21 13:55:49,213 | INFO     | --------------------------------------------------
[2025-11-21 08:56:37] 2025-11-21 13:55:49,213 | INFO     | 
[2025-11-21 08:56:37] 2025-11-21 13:55:49,213 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-21 08:56:37] 2025-11-21 13:55:49,229 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 08:56:37] 2025-11-21 13:55:49,229 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 08:56:37] 2025-11-21 13:55:49,230 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 08:56:37] 2025-11-21 13:55:49,230 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 08:56:37] 2025-11-21 13:55:49,230 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 08:56:37] 2025-11-21 13:55:49,230 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 08:56:37] 2025-11-21 13:55:49,230 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 08:56:37] 2025-11-21 13:55:49,230 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 08:56:37] 2025-11-21 13:55:49,230 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 08:56:37] 2025-11-21 13:55:49,230 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 08:56:37] 2025-11-21 13:55:49,230 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 08:56:37] 2025-11-21 13:55:49,230 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 08:56:37] 2025-11-21 13:55:49,230 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 08:56:37] 2025-11-21 13:55:49,230 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 08:56:37] 2025-11-21 13:55:49,230 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 08:56:37] 2025-11-21 13:55:49,231 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 08:56:37] 2025-11-21 13:55:49,231 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 08:56:37] 2025-11-21 13:55:49,231 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 08:56:37] 2025-11-21 13:55:49,231 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 08:56:37] 2025-11-21 13:55:49,231 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 08:56:37] 2025-11-21 13:55:49,231 | INFO     | job 6893850457 has completed (purged errors)
[2025-11-21 08:56:37] 2025-11-21 13:55:49,231 | INFO     | overall cleanup function is called
[2025-11-21 08:56:37] 2025-11-21 13:55:50,245 | INFO     | --- collectZombieJob: --- 10, [3331299]
[2025-11-21 08:56:37] 2025-11-21 13:55:50,245 | INFO     | zombie collector waiting for pid 3331299
[2025-11-21 08:56:37] 2025-11-21 13:55:50,245 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 08:56:37] 2025-11-21 13:55:50,245 | INFO     | collected zombie processes
[2025-11-21 08:56:37] 2025-11-21 13:55:50,245 | INFO     | will attempt to kill all subprocesses of pid=3331299
[2025-11-21 08:56:37] 2025-11-21 13:55:50,454 | INFO     | process IDs to be killed: [3331299] (in reverse order)
[2025-11-21 08:56:37] 2025-11-21 13:55:50,522 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 08:56:37] 2025-11-21 13:55:50,523 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 08:56:37] 2025-11-21 13:55:50,530 | INFO     | did not find any defunct processes belonging to 3331299
[2025-11-21 08:56:37] 2025-11-21 13:55:50,536 | INFO     | did not find any defunct processes belonging to 3331299
[2025-11-21 08:56:37] 2025-11-21 13:55:50,537 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 08:56:37] 2025-11-21 13:55:50,537 | INFO     | ready for new job
[2025-11-21 08:56:37] 2025-11-21 13:55:50,537 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 08:56:37] 2025-11-21 13:55:50,540 | INFO     | ***************************************
[2025-11-21 08:56:37] 2025-11-21 13:55:50,540 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 08:56:37] 2025-11-21 13:55:50,541 | INFO     | ***************************************
[2025-11-21 08:56:37] 2025-11-21 13:55:50,541 | INFO     | 
[2025-11-21 08:56:37] 2025-11-21 13:55:50,543 | INFO     | architecture information:
[2025-11-21 08:56:37] 2025-11-21 13:55:50,544 | INFO     | executing command: cat /etc/os-release
[2025-11-21 08:56:37] 2025-11-21 13:55:50,558 | INFO     | cat /etc/os-release:
[2025-11-21 08:56:37] NAME="CentOS Linux"
[2025-11-21 08:56:37] VERSION="7 (Core)"
[2025-11-21 08:56:37] ID="centos"
[2025-11-21 08:56:37] ID_LIKE="rhel fedora"
[2025-11-21 08:56:37] VERSION_ID="7"
[2025-11-21 08:56:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 08:56:37] ANSI_COLOR="0;31"
[2025-11-21 08:56:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 08:56:37] HOME_URL="https://www.centos.org/"
[2025-11-21 08:56:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 08:56:37] 
[2025-11-21 08:56:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 08:56:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 08:56:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 08:56:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 08:56:37] 
[2025-11-21 08:56:37] 2025-11-21 13:55:50,558 | INFO     | ***************************************
[2025-11-21 08:56:37] 2025-11-21 13:55:51,061 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-21 08:56:37] 2025-11-21 13:55:51,076 | INFO     | sufficient remaining disk space (64416120832 B)
[2025-11-21 08:56:37] 2025-11-21 13:55:51,076 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 08:56:37] 2025-11-21 13:55:51,076 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 08:56:37] 2025-11-21 13:55:51,076 | INFO     | update_server=False
[2025-11-21 08:56:37] 2025-11-21 13:55:51,076 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 08:56:37] 2025-11-21 13:55:51,076 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 08:56:37] 2025-11-21 13:55:51,142 | INFO     | all job control threads have been joined
[2025-11-21 08:56:37] 2025-11-21 13:55:51,437 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 08:56:37] 2025-11-21 13:55:51,738 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 08:56:37] 2025-11-21 13:55:51,739 | INFO     | aborting loop
[2025-11-21 08:56:37] 2025-11-21 13:55:51,960 | INFO     | all data control threads have been joined
[2025-11-21 08:56:37] 2025-11-21 13:55:52,078 | INFO     | [job] retrieve thread has finished
[2025-11-21 08:56:37] 2025-11-21 13:55:52,082 | INFO     | [job] queue monitor thread has finished
[2025-11-21 08:56:37] 2025-11-21 13:55:52,148 | INFO     | [job] control thread has finished
[2025-11-21 08:56:37] 2025-11-21 13:55:52,157 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 08:56:37] 2025-11-21 13:55:52,253 | INFO     | [data] copytool_in thread has finished
[2025-11-21 08:56:37] 2025-11-21 13:55:52,257 | INFO     | [payload] validate_post thread has finished
[2025-11-21 08:56:37] 2025-11-21 13:55:52,293 | INFO     | [job] validate thread has finished
[2025-11-21 08:56:37] 2025-11-21 13:55:52,350 | INFO     | all payload control threads have been joined
[2025-11-21 08:56:37] 2025-11-21 13:55:52,744 | INFO     | [job] job monitor thread has finished
[2025-11-21 08:56:37] 2025-11-21 13:55:52,966 | INFO     | [data] control thread has finished
[2025-11-21 08:56:37] 2025-11-21 13:55:52,980 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 08:56:37] 2025-11-21 13:55:53,172 | INFO     | [payload] failed_post thread has finished
[2025-11-21 08:56:37] 2025-11-21 13:55:53,344 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 08:56:37] 2025-11-21 13:55:53,355 | INFO     | [payload] control thread has finished
[2025-11-21 08:56:37] 2025-11-21 13:55:53,391 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 08:56:37] 2025-11-21 13:55:53,442 | INFO     | [data] copytool_out thread has finished
[2025-11-21 08:56:37] 2025-11-21 13:55:54,569 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 08:56:37] 2025-11-21 13:55:58,574 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 08:56:37] 2025-11-21 13:56:21,671 | INFO     | PID=3293605 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 08:56:37] 2025-11-21 13:56:21,671 | INFO     | .. there are 7 such processes running
[2025-11-21 08:56:37] 2025-11-21 13:56:21,671 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 08:56:37] 2025-11-21 13:56:21,671 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 08:56:37] 2025-11-21 13:56:21,671 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 08:56:37] 2025-11-21 13:56:30,407 | INFO     | [monitor] cgroup control has ended
[2025-11-21 08:56:37] 2025-11-21 13:56:32,011 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139738295342912)>', '<ExcThread(monitor, started 139737809536768)>']
[2025-11-21 08:56:37] 2025-11-21 13:56:32,725 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 08:56:37] 2025-11-21 13:56:32,726 | INFO     | [monitor] control thread has ended
[2025-11-21 08:56:37] 2025-11-21 13:56:37,030 | INFO     | all workflow threads have been joined
[2025-11-21 08:56:37] 2025-11-21 13:56:37,030 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 08:56:37] 2025-11-21 13:56:37,031 | INFO     | traces error code: 0
[2025-11-21 08:56:37] 2025-11-21 13:56:37,031 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 08:56:37] 2025-11-21 13:56:37,152 [wrapper] ==== pilot stdout END ====
[2025-11-21 08:56:37] 2025-11-21 13:56:37,154 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 08:56:37] 2025-11-21 13:56:37,156 [wrapper] pilotpid: 3293605
[2025-11-21 08:56:37] 2025-11-21 13:56:37,158 [wrapper] Pilot exit status: 0
[2025-11-21 08:56:37] 2025-11-21 13:56:37,167 [wrapper] pandaids: 6893850457 6893850457
[2025-11-21 08:56:37] 2025-11-21 13:56:37,209 [wrapper] cleanup supervisor_pilot 4164997 3293608
[2025-11-21 08:56:37] 2025-11-21 13:56:37,211 [wrapper] Test setup, not cleaning
[2025-11-21 08:56:37] 2025-11-21 13:56:37,213 [wrapper] apfmon messages muted
[2025-11-21 08:56:37] 2025-11-21 13:56:37,216 [wrapper] ==== wrapper stdout END ====
[2025-11-21 08:56:37] 2025-11-21 13:56:37,218 [wrapper] ==== wrapper stderr END ====
[2025-11-21 08:56:37]  *** Error codes and diagnostics ***
[2025-11-21 08:56:37]     "exeErrorCode": 0,
[2025-11-21 08:56:37]     "exeErrorDiag": "",
[2025-11-21 08:56:37]     "pilotErrorCode": 0,
[2025-11-21 08:56:37]     "pilotErrorDiag": "",
[2025-11-21 08:56:37]  *** Listing of results directory ***
[2025-11-21 08:56:37] total 1705660
[2025-11-21 08:56:37] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-21 08:56:37] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 06:09 pilot3.tar.gz
[2025-11-21 08:56:37] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 06:20 queuedata.json
[2025-11-21 08:56:37] -rwx------. 1 boincer umatlas     36292 Nov 20 06:22 runpilot2-wrapper.sh
[2025-11-21 08:56:37] -rw-r--r--. 1 boincer umatlas       100 Nov 20 21:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 08:56:37] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 21:47 run_atlas
[2025-11-21 08:56:37] -rw-r--r--. 1 boincer umatlas       105 Nov 20 21:47 job.xml
[2025-11-21 08:56:37] -rw-r--r--. 3 boincer umatlas 407745559 Nov 20 21:47 EVNT.47493127._000337.pool.root.1
[2025-11-21 08:56:37] -rw-r--r--. 3 boincer umatlas 407745559 Nov 20 21:47 ATLAS.root_0
[2025-11-21 08:56:37] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 21:47 start_atlas.sh
[2025-11-21 08:56:37] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 21:47 shared
[2025-11-21 08:56:37] -rw-r--r--. 2 boincer umatlas    590101 Nov 20 21:47 input.tar.gz
[2025-11-21 08:56:37] -rw-r--r--. 1 boincer umatlas         0 Nov 20 21:47 boinc_lockfile
[2025-11-21 08:56:37] -rw-r--r--. 1 boincer umatlas      2783 Nov 20 22:46 pandaJob.out
[2025-11-21 08:56:37] -rw-------. 1 boincer umatlas        57 Nov 20 22:46 setup.sh.local
[2025-11-21 08:56:37] -rw-------. 1 boincer umatlas    989817 Nov 20 22:46 agis_schedconf.cvmfs.json
[2025-11-21 08:56:37] -rw-r--r--. 1 boincer umatlas       533 Nov 21 08:46 boinc_task_state.xml
[2025-11-21 08:56:37] -rw-r--r--. 1 boincer umatlas      6846 Nov 21 08:47 init_data.xml
[2025-11-21 08:56:37] -rw-------. 1 boincer umatlas 913265934 Nov 21 08:55 HITS.47523449._003361.pool.root.1
[2025-11-21 08:56:37] -rw-------. 1 boincer umatlas      1049 Nov 21 08:55 memory_monitor_summary.json
[2025-11-21 08:56:37] -rw-------. 1 boincer umatlas   1526164 Nov 21 08:55 agis_ddmendpoints.agis.ALL.json
[2025-11-21 08:56:37] -rw-------. 1 boincer umatlas   1866880 Nov 21 08:55 log.47523449._003361.job.log.tgz.1
[2025-11-21 08:56:37] -rw-------. 1 boincer umatlas        96 Nov 21 08:55 pilot_heartbeat.json
[2025-11-21 08:56:37] -rw-------. 1 boincer umatlas      8616 Nov 21 08:55 heartbeat.json
[2025-11-21 08:56:37] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 08:56 boinc_mmap_file
[2025-11-21 08:56:37] -rw-r--r--. 1 boincer umatlas        29 Nov 21 08:56 wrapper_checkpoint.txt
[2025-11-21 08:56:37] -rw-------. 1 boincer umatlas      4823 Nov 21 08:56 pilotlog.txt
[2025-11-21 08:56:37] -rw-------. 1 boincer umatlas   5081972 Nov 21 08:56 log.47523449._003361.job.log.1
[2025-11-21 08:56:37] -rw-------. 1 boincer umatlas       353 Nov 21 08:56 output.list
[2025-11-21 08:56:37] -rw-r--r--. 1 boincer umatlas       620 Nov 21 08:56 runtime_log
[2025-11-21 08:56:37] -rw-------. 1 boincer umatlas   6973440 Nov 21 08:56 result.tar.gz
[2025-11-21 08:56:37] -rw-r--r--. 1 boincer umatlas      9438 Nov 21 08:56 runtime_log.err
[2025-11-21 08:56:37] -rw-------. 1 boincer umatlas       787 Nov 21 08:56 5j4KDmYvHg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmcWGKDmfMgOtn.diag
[2025-11-21 08:56:37] -rw-r--r--. 1 boincer umatlas     23617 Nov 21 08:56 stderr.txt
[2025-11-21 08:56:37] HITS file was successfully produced:
[2025-11-21 08:56:37] -rw-------. 1 boincer umatlas 913265934 Nov 21 08:55 shared/HITS.pool.root.1
[2025-11-21 08:56:37]  *** Contents of shared directory: ***
[2025-11-21 08:56:37] total 1297472
[2025-11-21 08:56:37] -rw-r--r--. 3 boincer umatlas 407745559 Nov 20 21:47 ATLAS.root_0
[2025-11-21 08:56:37] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 21:47 start_atlas.sh
[2025-11-21 08:56:37] -rw-r--r--. 2 boincer umatlas    590101 Nov 20 21:47 input.tar.gz
[2025-11-21 08:56:37] -rw-------. 1 boincer umatlas 913265934 Nov 21 08:55 HITS.pool.root.1
[2025-11-21 08:56:37] -rw-------. 1 boincer umatlas   6973440 Nov 21 08:56 result.tar.gz
08:56:38 (3271544): run_atlas exited; CPU time 220127.234526
08:56:38 (3271544): called boinc_finish(0)

</stderr_txt>
]]>

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