Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:41:18 (12437): wrapper (7.7.26015): starting
02:41:18 (12437): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 02:41:18] Arguments: --nthreads 8
[2025-11-24 02:41:18] Threads: 8
[2025-11-24 02:41:18] Checking for CVMFS
[2025-11-24 02:41:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 02:41:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 02:41:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 02:41:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 02:41:21] 2.11.2.0 32329 281793 144460 153228 3 84 16083428 25165824 4632 130560 3 139430905 99.887 80672399 3126 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 02:41:21] CVMFS is ok
[2025-11-24 02:41:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 02:41:21] Checking for apptainer binary...
[2025-11-24 02:41:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 02:41:21] Running /usr/bin/apptainer --version
[2025-11-24 02:41:21] apptainer version 1.3.2-1.el7
[2025-11-24 02:41:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 02:41:41] cg-vwn362.simple-grid.lan
[2025-11-24 02:41:41] apptainer works
[2025-11-24 02:41:41] Set ATHENA_PROC_NUMBER=8
[2025-11-24 02:41:41] Set ATHENA_CORE_NUMBER=8
[2025-11-24 02:41:41] Starting ATLAS job with PandaID=6893867238
[2025-11-24 02:41:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 00:57:20]  *** The last 200 lines of the pilot log: ***
[2025-11-25 00:57:20] 2025-11-24 23:56:07,576 | INFO     | time since job start (79816s) is within the limit (172800.0s)
[2025-11-25 00:57:20] 2025-11-24 23:56:08,499 | INFO     | monitor loop #5364: job 0:6893867238 is in state 'finished'
[2025-11-25 00:57:20] 2025-11-24 23:56:08,499 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:57:20] 2025-11-24 23:56:09,583 | INFO     | time since job start (79818s) is within the limit (172800.0s)
[2025-11-25 00:57:20] 2025-11-24 23:56:11,003 | INFO     | monitor loop #5365: job 0:6893867238 is in state 'finished'
[2025-11-25 00:57:20] 2025-11-24 23:56:11,003 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:57:20] 2025-11-24 23:56:11,590 | INFO     | time since job start (79820s) is within the limit (172800.0s)
[2025-11-25 00:57:20] 2025-11-24 23:56:12,783 | INFO     | PID=16223 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 00:57:20] 2025-11-24 23:56:12,783 | INFO     | .. there are 2 such processes running
[2025-11-25 00:57:20] 2025-11-24 23:56:13,508 | INFO     | monitor loop #5366: job 0:6893867238 is in state 'finished'
[2025-11-25 00:57:20] 2025-11-24 23:56:13,508 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:57:20] 2025-11-24 23:56:13,785 | INFO     | time since job start (79822s) is within the limit (172800.0s)
[2025-11-25 00:57:20] 2025-11-24 23:56:15,795 | INFO     | time since job start (79824s) is within the limit (172800.0s)
[2025-11-25 00:57:20] 2025-11-24 23:56:16,013 | INFO     | monitor loop #5367: job 0:6893867238 is in state 'finished'
[2025-11-25 00:57:20] 2025-11-24 23:56:16,013 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:57:20] 2025-11-24 23:56:17,727 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 00:57:20] 2025-11-24 23:56:17,730 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 00:57:20] 2025-11-24 23:56:17,733 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6893867238/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 00:57:20] 2025-11-24 23:56:17,733 | INFO     | extracted standard info from prmon json
[2025-11-25 00:57:20] 2025-11-24 23:56:17,733 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 00:57:20] 2025-11-24 23:56:17,734 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 00:57:20] 2025-11-24 23:56:17,765 | INFO     | fitting pss+swap vs Time
[2025-11-25 00:57:20] 2025-11-24 23:56:17,768 | INFO     | sum of square deviations: 679683020934.0092
[2025-11-25 00:57:20] 2025-11-24 23:56:17,815 | INFO     | sum of deviations: 2755270147332.289
[2025-11-25 00:57:20] 2025-11-24 23:56:17,815 | INFO     | mean x: 1763988862.0554273
[2025-11-25 00:57:20] 2025-11-24 23:56:17,815 | INFO     | mean y: 2812887.7459584298
[2025-11-25 00:57:20] 2025-11-24 23:56:17,816 | INFO     | intersect: -7147970201.066644
[2025-11-25 00:57:20] 2025-11-24 23:56:17,817 | INFO     | chi2: 34.28318682443052
[2025-11-25 00:57:20] 2025-11-24 23:56:17,819 | INFO     | sum of square deviations: 671865087840.9171
[2025-11-25 00:57:20] 2025-11-24 23:56:17,848 | INFO     | time since job start (79826s) is within the limit (172800.0s)
[2025-11-25 00:57:20] 2025-11-24 23:56:17,877 | INFO     | sum of deviations: 3175017254986.415
[2025-11-25 00:57:20] 2025-11-24 23:56:17,877 | INFO     | mean x: 1763988709.5595055
[2025-11-25 00:57:20] 2025-11-24 23:56:17,877 | INFO     | mean y: 2821074.0270479135
[2025-11-25 00:57:20] 2025-11-24 23:56:17,878 | INFO     | intersect: -8333219437.395941
[2025-11-25 00:57:20] 2025-11-24 23:56:17,879 | INFO     | chi2: 31.020705415085907
[2025-11-25 00:57:20] 2025-11-24 23:56:17,880 | INFO     | current chi2=31.020705415085907 (change=9.51627229420732 %)
[2025-11-25 00:57:20] 2025-11-24 23:56:17,880 | INFO     | right removable region: 1293
[2025-11-25 00:57:20] 2025-11-24 23:56:17,882 | INFO     | sum of square deviations: 671864251530.9171
[2025-11-25 00:57:20] 2025-11-24 23:56:17,928 | INFO     | sum of deviations: 2206596298725.0273
[2025-11-25 00:57:20] 2025-11-24 23:56:17,929 | INFO     | mean x: 1763989014.5595055
[2025-11-25 00:57:20] 2025-11-24 23:56:17,929 | INFO     | mean y: 2823589.1684698607
[2025-11-25 00:57:20] 2025-11-24 23:56:17,929 | INFO     | intersect: -5790625938.246217
[2025-11-25 00:57:20] 2025-11-24 23:56:17,931 | INFO     | chi2: 29.37077363076288
[2025-11-25 00:57:20] 2025-11-24 23:56:17,931 | INFO     | current chi2=29.37077363076288 (change=14.328928109352457 %)
[2025-11-25 00:57:20] 2025-11-24 23:56:17,931 | INFO     | left removable region: 10
[2025-11-25 00:57:20] 2025-11-24 23:56:17,933 | INFO     | sum of square deviations: 654875493823.9644
[2025-11-25 00:57:20] 2025-11-24 23:56:17,976 | INFO     | sum of deviations: 2230420836333.6147
[2025-11-25 00:57:20] 2025-11-24 23:56:17,976 | INFO     | mean x: 1763988984.0685892
[2025-11-25 00:57:20] 2025-11-24 23:56:17,976 | INFO     | mean y: 2843359.07248636
[2025-11-25 00:57:20] 2025-11-24 23:56:17,977 | INFO     | intersect: -6005073904.948931
[2025-11-25 00:57:20] 2025-11-24 23:56:17,978 | INFO     | chi2: 21.51833741602736
[2025-11-25 00:57:20] 2025-11-24 23:56:17,979 | INFO     | current memory leak: 3.41 B/s (using 1283 data points, chi2=21.52)
[2025-11-25 00:57:20] 2025-11-24 23:56:17,980 | INFO     | could have reported an average CPU frequency of 1999 MHz (44 samples)
[2025-11-25 00:57:20] 2025-11-24 23:56:17,980 | INFO     | ..............................
[2025-11-25 00:57:20] 2025-11-24 23:56:17,981 | INFO     | . Timing measurements:
[2025-11-25 00:57:20] 2025-11-24 23:56:17,981 | INFO     | . get job = 0 s
[2025-11-25 00:57:20] 2025-11-24 23:56:17,981 | INFO     | . initial setup = 16 s
[2025-11-25 00:57:20] 2025-11-24 23:56:17,981 | INFO     | . payload setup = 168 s
[2025-11-25 00:57:20] 2025-11-24 23:56:17,981 | INFO     | . stage-in = 0 s
[2025-11-25 00:57:20] 2025-11-24 23:56:17,981 | INFO     | . payload execution = 79341 s
[2025-11-25 00:57:20] 2025-11-24 23:56:17,981 | INFO     | . stage-out = 6 s
[2025-11-25 00:57:20] 2025-11-24 23:56:17,981 | INFO     | . log creation = 2 s
[2025-11-25 00:57:20] 2025-11-24 23:56:17,981 | INFO     | ..............................
[2025-11-25 00:57:20] 2025-11-24 23:56:18,117 | INFO     | 
[2025-11-25 00:57:20] 2025-11-24 23:56:18,117 | INFO     | job summary report
[2025-11-25 00:57:20] 2025-11-24 23:56:18,117 | INFO     | --------------------------------------------------
[2025-11-25 00:57:20] 2025-11-24 23:56:18,117 | INFO     | PanDA job id: 6893867238
[2025-11-25 00:57:20] 2025-11-24 23:56:18,117 | INFO     | task id: 47523449
[2025-11-25 00:57:20] 2025-11-24 23:56:18,117 | INFO     | errors: (none)
[2025-11-25 00:57:20] 2025-11-24 23:56:18,117 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 00:57:20] 2025-11-24 23:56:18,118 | INFO     | pilot state: finished 
[2025-11-25 00:57:20] 2025-11-24 23:56:18,118 | INFO     | transexitcode: 0
[2025-11-25 00:57:20] 2025-11-24 23:56:18,118 | INFO     | exeerrorcode: 0
[2025-11-25 00:57:20] 2025-11-24 23:56:18,118 | INFO     | exeerrordiag: 
[2025-11-25 00:57:20] 2025-11-24 23:56:18,118 | INFO     | exitcode: 0
[2025-11-25 00:57:20] 2025-11-24 23:56:18,118 | INFO     | exitmsg: OK
[2025-11-25 00:57:20] 2025-11-24 23:56:18,118 | INFO     | cpuconsumptiontime: 344454 s
[2025-11-25 00:57:20] 2025-11-24 23:56:18,118 | INFO     | nevents: 1000
[2025-11-25 00:57:20] 2025-11-24 23:56:18,118 | INFO     | neventsw: 0
[2025-11-25 00:57:20] 2025-11-24 23:56:18,119 | INFO     | pid: 22813
[2025-11-25 00:57:20] 2025-11-24 23:56:18,119 | INFO     | pgrp: 22813
[2025-11-25 00:57:20] 2025-11-24 23:56:18,119 | INFO     | corecount: 8
[2025-11-25 00:57:20] 2025-11-24 23:56:18,119 | INFO     | event service: False
[2025-11-25 00:57:20] 2025-11-24 23:56:18,119 | INFO     | sizes: {0: 2298579, 1: 2298663, 2: 2298862, 13: 2298862, 23: 2298918, 34: 2298946, 45: 2299102, 56: 2299130, 66: 2299158, 77: 2299186, 88: 2299242, 98: 2299812, 99
[2025-11-25 00:57:20] 2025-11-24 23:56:18,119 | INFO     | --------------------------------------------------
[2025-11-25 00:57:20] 2025-11-24 23:56:18,119 | INFO     | 
[2025-11-25 00:57:20] 2025-11-24 23:56:18,119 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-11-25 00:57:20] 2025-11-24 23:56:18,722 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 00:57:20] 2025-11-24 23:56:18,722 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 00:57:20] 2025-11-24 23:56:18,722 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 00:57:20] 2025-11-24 23:56:18,723 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 00:57:20] 2025-11-24 23:56:18,723 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 00:57:20] 2025-11-24 23:56:18,723 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 00:57:20] 2025-11-24 23:56:18,723 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 00:57:20] 2025-11-24 23:56:18,723 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 00:57:20] 2025-11-24 23:56:18,723 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 00:57:20] 2025-11-24 23:56:18,723 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 00:57:20] 2025-11-24 23:56:18,723 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 00:57:20] 2025-11-24 23:56:18,723 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 00:57:20] 2025-11-24 23:56:18,723 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 00:57:20] 2025-11-24 23:56:18,724 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 00:57:20] 2025-11-24 23:56:18,724 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 00:57:20] 2025-11-24 23:56:18,724 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 00:57:20] 2025-11-24 23:56:18,724 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 00:57:20] 2025-11-24 23:56:18,724 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 00:57:20] 2025-11-24 23:56:18,724 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 00:57:20] 2025-11-24 23:56:18,724 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 00:57:20] 2025-11-24 23:56:18,724 | INFO     | job 6893867238 has completed (purged errors)
[2025-11-25 00:57:20] 2025-11-24 23:56:18,724 | INFO     | overall cleanup function is called
[2025-11-25 00:57:20] 2025-11-24 23:56:19,741 | INFO     | --- collectZombieJob: --- 10, [22813]
[2025-11-25 00:57:20] 2025-11-24 23:56:19,741 | INFO     | zombie collector waiting for pid 22813
[2025-11-25 00:57:20] 2025-11-24 23:56:19,741 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 00:57:20] 2025-11-24 23:56:19,741 | INFO     | collected zombie processes
[2025-11-25 00:57:20] 2025-11-24 23:56:19,741 | INFO     | will attempt to kill all subprocesses of pid=22813
[2025-11-25 00:57:20] 2025-11-24 23:56:19,849 | INFO     | process IDs to be killed: [22813] (in reverse order)
[2025-11-25 00:57:20] 2025-11-24 23:56:20,534 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 00:57:20] 2025-11-24 23:56:20,535 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 00:57:20] 2025-11-24 23:56:20,537 | INFO     | did not find any defunct processes belonging to 22813
[2025-11-25 00:57:20] 2025-11-24 23:56:20,539 | INFO     | did not find any defunct processes belonging to 22813
[2025-11-25 00:57:20] 2025-11-24 23:56:20,585 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 00:57:20] 2025-11-24 23:56:20,585 | INFO     | ready for new job
[2025-11-25 00:57:20] 2025-11-24 23:56:20,585 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 00:57:20] 2025-11-24 23:56:20,590 | INFO     | ***************************************
[2025-11-25 00:57:20] 2025-11-24 23:56:20,591 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 00:57:20] 2025-11-24 23:56:20,591 | INFO     | ***************************************
[2025-11-25 00:57:20] 2025-11-24 23:56:20,591 | INFO     | 
[2025-11-25 00:57:20] 2025-11-24 23:56:20,591 | INFO     | pilot is running in a VM
[2025-11-25 00:57:20] 2025-11-24 23:56:20,592 | INFO     | architecture information:
[2025-11-25 00:57:20] 2025-11-24 23:56:20,600 | INFO     | executing command: cat /etc/os-release
[2025-11-25 00:57:20] 2025-11-24 23:56:20,874 | INFO     | cat /etc/os-release:
[2025-11-25 00:57:20] NAME="CentOS Linux"
[2025-11-25 00:57:20] VERSION="7 (Core)"
[2025-11-25 00:57:20] ID="centos"
[2025-11-25 00:57:20] ID_LIKE="rhel fedora"
[2025-11-25 00:57:20] VERSION_ID="7"
[2025-11-25 00:57:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 00:57:20] ANSI_COLOR="0;31"
[2025-11-25 00:57:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 00:57:20] HOME_URL="https://www.centos.org/"
[2025-11-25 00:57:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 00:57:20] 
[2025-11-25 00:57:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 00:57:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 00:57:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 00:57:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 00:57:20] 
[2025-11-25 00:57:20] 2025-11-24 23:56:20,874 | INFO     | ***************************************
[2025-11-25 00:57:20] 2025-11-24 23:56:21,378 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-11-25 00:57:20] 2025-11-24 23:56:21,670 | INFO     | sufficient remaining disk space (493015269376 B)
[2025-11-25 00:57:20] 2025-11-24 23:56:21,671 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 00:57:20] 2025-11-24 23:56:21,671 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 00:57:20] 2025-11-24 23:56:21,671 | INFO     | update_server=False
[2025-11-25 00:57:20] 2025-11-24 23:56:21,671 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 00:57:20] 2025-11-24 23:56:22,035 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:57:20] 2025-11-24 23:56:22,035 | INFO     | aborting loop
[2025-11-25 00:57:20] 2025-11-24 23:56:22,444 | INFO     | all job control threads have been joined
[2025-11-25 00:57:20] 2025-11-24 23:56:22,677 | INFO     | [job] retrieve thread has finished
[2025-11-25 00:57:20] 2025-11-24 23:56:22,688 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 00:57:20] 2025-11-24 23:56:22,749 | INFO     | all data control threads have been joined
[2025-11-25 00:57:20] 2025-11-24 23:56:22,828 | INFO     | all payload control threads have been joined
[2025-11-25 00:57:20] 2025-11-24 23:56:22,862 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 00:57:20] 2025-11-24 23:56:23,041 | INFO     | [job] job monitor thread has finished
[2025-11-25 00:57:20] 2025-11-24 23:56:23,133 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:57:20] 2025-11-24 23:56:23,151 | INFO     | [data] copytool_in thread has finished
[2025-11-25 00:57:20] 2025-11-24 23:56:23,154 | INFO     | [job] validate thread has finished
[2025-11-25 00:57:20] 2025-11-24 23:56:23,311 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 00:57:20] 2025-11-24 23:56:23,323 | INFO     | [payload] validate_post thread has finished
[2025-11-25 00:57:20] 2025-11-24 23:56:23,372 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 00:57:20] 2025-11-24 23:56:23,450 | INFO     | [job] control thread has finished
[2025-11-25 00:57:20] 2025-11-24 23:56:23,755 | INFO     | [data] control thread has finished
[2025-11-25 00:57:20] 2025-11-24 23:56:23,834 | INFO     | [payload] control thread has finished
[2025-11-25 00:57:20] 2025-11-24 23:56:23,906 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 00:57:20] 2025-11-24 23:56:23,961 | INFO     | [payload] failed_post thread has finished
[2025-11-25 00:57:20] 2025-11-24 23:56:24,118 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 00:57:20] 2025-11-24 23:56:24,139 | INFO     | [job] queue monitor thread has finished
[2025-11-25 00:57:20] 2025-11-24 23:56:24,869 | INFO     | [data] copytool_out thread has finished
[2025-11-25 00:57:20] 2025-11-24 23:56:27,915 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 00:57:20] 2025-11-24 23:56:51,025 | INFO     | PID=16223 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 00:57:20] 2025-11-24 23:56:51,025 | INFO     | .. there are 2 such processes running
[2025-11-25 00:57:20] 2025-11-24 23:56:51,026 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 00:57:20] 2025-11-24 23:56:51,026 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 00:57:20] 2025-11-24 23:56:51,026 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 00:57:20] 2025-11-24 23:57:10,078 | INFO     | [monitor] cgroup control has ended
[2025-11-25 00:57:20] 2025-11-24 23:57:10,095 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140454529541952)>', '<ExcThread(monitor, started 140453785614080)>']
[2025-11-25 00:57:20] 2025-11-24 23:57:10,141 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 00:57:20] 2025-11-24 23:57:10,141 | INFO     | [monitor] control thread has ended
[2025-11-25 00:57:20] 2025-11-24 23:57:15,121 | INFO     | all workflow threads have been joined
[2025-11-25 00:57:20] 2025-11-24 23:57:15,121 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 00:57:20] 2025-11-24 23:57:15,121 | INFO     | traces error code: 0
[2025-11-25 00:57:20] 2025-11-24 23:57:15,122 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 00:57:20] 2025-11-24 23:57:15,674 [wrapper] ==== pilot stdout END ====
[2025-11-25 00:57:20] 2025-11-24 23:57:15,786 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 00:57:20] 2025-11-24 23:57:15,896 [wrapper] pilotpid: 16223
[2025-11-25 00:57:20] 2025-11-24 23:57:16,011 [wrapper] Pilot exit status: 0
[2025-11-25 00:57:20] 2025-11-24 23:57:16,399 [wrapper] pandaids: 6893867238
[2025-11-25 00:57:20] 2025-11-24 23:57:17,372 [wrapper] cleanup supervisor_pilot  5086 16224
[2025-11-25 00:57:20] 2025-11-24 23:57:17,529 [wrapper] Test setup, not cleaning
[2025-11-25 00:57:20] 2025-11-24 23:57:17,628 [wrapper] apfmon messages muted
[2025-11-25 00:57:20] 2025-11-24 23:57:17,737 [wrapper] ==== wrapper stdout END ====
[2025-11-25 00:57:20] 2025-11-24 23:57:17,803 [wrapper] ==== wrapper stderr END ====
[2025-11-25 00:57:20]  *** Error codes and diagnostics ***
[2025-11-25 00:57:20]     "exeErrorCode": 0,
[2025-11-25 00:57:20]     "exeErrorDiag": "",
[2025-11-25 00:57:20]     "pilotErrorCode": 0,
[2025-11-25 00:57:20]     "pilotErrorDiag": "",
[2025-11-25 00:57:20]  *** Listing of results directory ***
[2025-11-25 00:57:20] total 1339572
[2025-11-25 00:57:20] -rw-r--r--. 1 boinc boinc    576529 Nov 20 15:06 pilot3.tar.gz
[2025-11-25 00:57:20] -rw-r--r--. 1 boinc boinc      5112 Nov 20 15:31 queuedata.json
[2025-11-25 00:57:20] -rwx------. 1 boinc boinc     36292 Nov 20 15:32 runpilot2-wrapper.sh
[2025-11-25 00:57:20] -rw-r--r--. 1 boinc boinc       100 Nov 24 02:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 00:57:20] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 02:41 run_atlas
[2025-11-25 00:57:20] -rw-r--r--. 1 boinc boinc       105 Nov 24 02:41 job.xml
[2025-11-25 00:57:20] -rw-r--r--. 1 boinc boinc      6392 Nov 24 02:41 init_data.xml
[2025-11-25 00:57:20] -rw-r--r--. 2 boinc boinc 410036189 Nov 24 02:41 EVNT.47493127._000616.pool.root.1
[2025-11-25 00:57:20] -rw-r--r--. 2 boinc boinc     15847 Nov 24 02:41 start_atlas.sh
[2025-11-25 00:57:20] drwxrwx--x. 2 boinc boinc        68 Nov 24 02:41 shared
[2025-11-25 00:57:20] -rw-r--r--. 2 boinc boinc    590101 Nov 24 02:41 input.tar.gz
[2025-11-25 00:57:20] -rw-r--r--. 1 boinc boinc         0 Nov 24 02:41 boinc_lockfile
[2025-11-25 00:57:20] -rw-r--r--. 1 boinc boinc      2785 Nov 24 02:41 pandaJob.out
[2025-11-25 00:57:20] -rw-------. 1 boinc boinc    989786 Nov 24 02:45 agis_schedconf.cvmfs.json
[2025-11-25 00:57:20] drwx------. 5 boinc boinc      4096 Nov 24 02:45 pilot3
[2025-11-25 00:57:20] -rw-r--r--. 1 boinc boinc       533 Nov 25 00:20 boinc_task_state.xml
[2025-11-25 00:57:20] -rw-------. 1 boinc boinc 931608626 Nov 25 00:53 HITS.47523449._006157.pool.root.1
[2025-11-25 00:57:20] -rw-------. 1 boinc boinc      1032 Nov 25 00:54 memory_monitor_summary.json
[2025-11-25 00:57:20] -rw-------. 1 boinc boinc   1516227 Nov 25 00:54 agis_ddmendpoints.agis.ALL.json
[2025-11-25 00:57:20] -rw-------. 1 boinc boinc   2428248 Nov 25 00:54 log.47523449._006157.job.log.tgz.1
[2025-11-25 00:57:20] -rw-------. 1 boinc boinc      8633 Nov 25 00:56 heartbeat.json
[2025-11-25 00:57:20] -rw-------. 1 boinc boinc        95 Nov 25 00:56 pilot_heartbeat.json
[2025-11-25 00:57:20] -rw-r--r--. 1 boinc boinc      8192 Nov 25 00:56 boinc_mmap_file
[2025-11-25 00:57:20] -rw-r--r--. 1 boinc boinc        29 Nov 25 00:56 wrapper_checkpoint.txt
[2025-11-25 00:57:20] -rw-------. 1 boinc boinc      4884 Nov 25 00:57 pilotlog.txt
[2025-11-25 00:57:20] -rw-------. 1 boinc boinc  10659322 Nov 25 00:57 log.47523449._006157.job.log.1
[2025-11-25 00:57:20] -rw-------. 1 boinc boinc       353 Nov 25 00:57 output.list
[2025-11-25 00:57:20] -rw-r--r--. 1 boinc boinc       620 Nov 25 00:57 runtime_log
[2025-11-25 00:57:20] -rw-------. 1 boinc boinc  13107200 Nov 25 00:57 result.tar.gz
[2025-11-25 00:57:20] -rw-r--r--. 1 boinc boinc      8817 Nov 25 00:57 runtime_log.err
[2025-11-25 00:57:20] -rw-------. 1 boinc boinc       662 Nov 25 00:57 AY9NDmAtKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmh5HKDmcabYRn.diag
[2025-11-25 00:57:20] -rw-r--r--. 1 boinc boinc     21502 Nov 25 00:57 stderr.txt
[2025-11-25 00:57:20] HITS file was successfully produced:
[2025-11-25 00:57:20] -rw-------. 1 boinc boinc 931608626 Nov 25 00:53 shared/HITS.pool.root.1
[2025-11-25 00:57:20]  *** Contents of shared directory: ***
[2025-11-25 00:57:20] total 1323600
[2025-11-25 00:57:20] -rw-r--r--. 2 boinc boinc 410036189 Nov 24 02:41 ATLAS.root_0
[2025-11-25 00:57:20] -rw-r--r--. 2 boinc boinc     15847 Nov 24 02:41 start_atlas.sh
[2025-11-25 00:57:20] -rw-r--r--. 2 boinc boinc    590101 Nov 24 02:41 input.tar.gz
[2025-11-25 00:57:20] -rw-------. 1 boinc boinc 931608626 Nov 25 00:53 HITS.pool.root.1
[2025-11-25 00:57:20] -rw-------. 1 boinc boinc  13107200 Nov 25 00:57 result.tar.gz
00:57:22 (12437): run_atlas exited; CPU time 344713.721937
00:57:22 (12437): called boinc_finish(0)

</stderr_txt>
]]>

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