Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:29:35 (334420): wrapper (7.7.26015): starting
17:29:35 (334420): wrapper: running run_atlas (--nthreads 4)
[2025-11-22 17:29:35] Arguments: --nthreads 4
[2025-11-22 17:29:35] Threads: 4
[2025-11-22 17:29:35] Checking for CVMFS
[2025-11-22 17:29:35] No cvmfs_config command found, will try listing directly
[2025-11-22 17:29:35] CVMFS is ok
[2025-11-22 17:29:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 17:29:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 17:29:35] Further information can be found at the LHC@home message board.
[2025-11-22 17:29:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 17:29:35] Checking for apptainer binary...
[2025-11-22 17:29:35] which: no apptainer in ((null))
[2025-11-22 17:29:35] apptainer is not installed, using version from CVMFS
[2025-11-22 17:29:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 17:29:35] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot64/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut07.grid.cesnet.cz
[2025-11-22 17:29:35] apptainer works
[2025-11-22 17:29:35] Set ATHENA_PROC_NUMBER=4
[2025-11-22 17:29:35] Set ATHENA_CORE_NUMBER=4
[2025-11-22 17:29:35] Starting ATLAS job with PandaID=6893864478
[2025-11-22 17:29:35] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot64/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 11:32:43]  *** The last 200 lines of the pilot log: ***
[2025-11-23 11:32:43] 2025-11-23 10:03:54,948 | INFO     | monitor loop #4535: job 0:6893864478 is in state 'finished'
[2025-11-23 11:32:43] 2025-11-23 10:03:54,948 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 11:32:43] 2025-11-23 10:03:55,454 | INFO     | time since job start (63248s) is within the limit (172800.0s)
[2025-11-23 11:32:43] 2025-11-23 10:03:55,788 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-23 11:32:43] 2025-11-23 10:03:55,795 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2771.022984374999
[2025-11-23 11:32:43] 2025-11-23 10:03:55,802 | INFO     | using path: /scratch/boinc/var/slot64/slots/0/PanDA_Pilot-6893864478/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 11:32:43] 2025-11-23 10:03:55,803 | INFO     | extracted standard info from prmon json
[2025-11-23 11:32:43] 2025-11-23 10:03:55,803 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 11:32:43] 2025-11-23 10:03:55,803 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 11:32:43] 2025-11-23 10:03:55,813 | INFO     | fitting pss+swap vs Time
[2025-11-23 11:32:43] 2025-11-23 10:03:55,814 | INFO     | sum of square deviations: 345791431512.999
[2025-11-23 11:32:43] 2025-11-23 10:03:55,827 | INFO     | sum of deviations: 928560136197.9263
[2025-11-23 11:32:43] 2025-11-23 10:03:55,827 | INFO     | mean x: 1763860613.0009644
[2025-11-23 11:32:43] 2025-11-23 10:03:55,827 | INFO     | mean y: 2284217.0732883317
[2025-11-23 11:32:43] 2025-11-23 10:03:55,828 | INFO     | intersect: -4734243359.321453
[2025-11-23 11:32:43] 2025-11-23 10:03:55,828 | INFO     | chi2: 5.062658161254311
[2025-11-23 11:32:43] 2025-11-23 10:03:55,829 | INFO     | sum of square deviations: 340813701277.9991
[2025-11-23 11:32:43] 2025-11-23 10:03:55,842 | INFO     | sum of deviations: 1205897268994.0496
[2025-11-23 11:32:43] 2025-11-23 10:03:55,843 | INFO     | mean x: 1763860460.500969
[2025-11-23 11:32:43] 2025-11-23 10:03:55,843 | INFO     | mean y: 2292713.9496124033
[2025-11-23 11:32:43] 2025-11-23 10:03:55,843 | INFO     | intersect: -6238754826.770293
[2025-11-23 11:32:43] 2025-11-23 10:03:55,843 | INFO     | chi2: 1.9524808230106543
[2025-11-23 11:32:43] 2025-11-23 10:03:55,843 | INFO     | current chi2=1.9524808230106543 (change=61.433682448610895 %)
[2025-11-23 11:32:43] 2025-11-23 10:03:55,844 | INFO     | sum of square deviations: 335883971942.999
[2025-11-23 11:32:43] 2025-11-23 10:03:55,857 | INFO     | sum of deviations: 1213786339948.386
[2025-11-23 11:32:43] 2025-11-23 10:03:55,858 | INFO     | mean x: 1763860308.0009737
[2025-11-23 11:32:43] 2025-11-23 10:03:55,858 | INFO     | mean y: 2292955.6144109056
[2025-11-23 11:32:43] 2025-11-23 10:03:55,858 | INFO     | intersect: -6371781803.130144
[2025-11-23 11:32:43] 2025-11-23 10:03:55,858 | INFO     | chi2: 1.894909502198423
[2025-11-23 11:32:43] 2025-11-23 10:03:55,858 | INFO     | current chi2=1.894909502198423 (change=2.948624136725624 %)
[2025-11-23 11:32:43] 2025-11-23 10:03:55,858 | INFO     | right removable region: 1026
[2025-11-23 11:32:43] 2025-11-23 10:03:55,859 | INFO     | sum of square deviations: 340813700667.9991
[2025-11-23 11:32:43] 2025-11-23 10:03:55,872 | INFO     | sum of deviations: 744154199965.1688
[2025-11-23 11:32:43] 2025-11-23 10:03:55,873 | INFO     | mean x: 1763860765.500969
[2025-11-23 11:32:43] 2025-11-23 10:03:55,873 | INFO     | mean y: 2289857.3304263568
[2025-11-23 11:32:43] 2025-11-23 10:03:55,873 | INFO     | intersect: -3849035351.217945
[2025-11-23 11:32:43] 2025-11-23 10:03:55,873 | INFO     | chi2: 3.3335956665592246
[2025-11-23 11:32:43] 2025-11-23 10:03:55,874 | INFO     | current chi2=3.3335956665592246 (change=34.15325387615542 %)
[2025-11-23 11:32:43] 2025-11-23 10:03:55,874 | INFO     | sum of square deviations: 335883970722.999
[2025-11-23 11:32:43] 2025-11-23 10:03:55,895 | INFO     | sum of deviations: 725560936675.0508
[2025-11-23 11:32:43] 2025-11-23 10:03:55,896 | INFO     | mean x: 1763860918.0009737
[2025-11-23 11:32:43] 2025-11-23 10:03:55,896 | INFO     | mean y: 2290431.9493670887
[2025-11-23 11:32:43] 2025-11-23 10:03:55,896 | INFO     | intersect: -3807919912.636363
[2025-11-23 11:32:43] 2025-11-23 10:03:55,897 | INFO     | chi2: 3.3305029413711953
[2025-11-23 11:32:43] 2025-11-23 10:03:55,898 | INFO     | current chi2=3.3305029413711953 (change=0.09277445429431572 %)
[2025-11-23 11:32:43] 2025-11-23 10:03:55,898 | INFO     | left removable region: 20
[2025-11-23 11:32:43] 2025-11-23 10:03:55,899 | INFO     | sum of square deviations: 315698027653.49896
[2025-11-23 11:32:43] 2025-11-23 10:03:55,914 | INFO     | sum of deviations: 994765118640.4261
[2025-11-23 11:32:43] 2025-11-23 10:03:55,914 | INFO     | mean x: 1763860887.500994
[2025-11-23 11:32:43] 2025-11-23 10:03:55,914 | INFO     | mean y: 2299587.572564612
[2025-11-23 11:32:43] 2025-11-23 10:03:55,914 | INFO     | intersect: -5555629608.443705
[2025-11-23 11:32:43] 2025-11-23 10:03:55,915 | INFO     | chi2: 0.1384198234771987
[2025-11-23 11:32:43] 2025-11-23 10:03:55,915 | INFO     | current memory leak: 3.15 B/s (using 1006 data points, chi2=0.14)
[2025-11-23 11:32:43] 2025-11-23 10:03:55,916 | INFO     | could have reported an average CPU frequency of 2578 MHz (38 samples)
[2025-11-23 11:32:43] 2025-11-23 10:03:55,916 | INFO     | ..............................
[2025-11-23 11:32:43] 2025-11-23 10:03:55,916 | INFO     | . Timing measurements:
[2025-11-23 11:32:43] 2025-11-23 10:03:55,916 | INFO     | . get job = 0 s
[2025-11-23 11:32:43] 2025-11-23 10:03:55,916 | INFO     | . initial setup = 1 s
[2025-11-23 11:32:43] 2025-11-23 10:03:55,916 | INFO     | . payload setup = 6 s
[2025-11-23 11:32:43] 2025-11-23 10:03:55,916 | INFO     | . stage-in = 0 s
[2025-11-23 11:32:43] 2025-11-23 10:03:55,917 | INFO     | . payload execution = 63208 s
[2025-11-23 11:32:43] 2025-11-23 10:03:55,917 | INFO     | . stage-out = 2 s
[2025-11-23 11:32:43] 2025-11-23 10:03:55,917 | INFO     | . log creation = 0 s
[2025-11-23 11:32:43] 2025-11-23 10:03:55,917 | INFO     | ..............................
[2025-11-23 11:32:43] 2025-11-23 10:03:56,340 | INFO     | 
[2025-11-23 11:32:43] 2025-11-23 10:03:56,341 | INFO     | job summary report
[2025-11-23 11:32:43] 2025-11-23 10:03:56,342 | INFO     | --------------------------------------------------
[2025-11-23 11:32:43] 2025-11-23 10:03:56,343 | INFO     | PanDA job id: 6893864478
[2025-11-23 11:32:43] 2025-11-23 10:03:56,343 | INFO     | task id: 47523449
[2025-11-23 11:32:43] 2025-11-23 10:03:56,343 | INFO     | errors: (none)
[2025-11-23 11:32:43] 2025-11-23 10:03:56,343 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 11:32:43] 2025-11-23 10:03:56,343 | INFO     | pilot state: finished 
[2025-11-23 11:32:43] 2025-11-23 10:03:56,343 | INFO     | transexitcode: 0
[2025-11-23 11:32:43] 2025-11-23 10:03:56,343 | INFO     | exeerrorcode: 0
[2025-11-23 11:32:43] 2025-11-23 10:03:56,343 | INFO     | exeerrordiag: 
[2025-11-23 11:32:43] 2025-11-23 10:03:56,343 | INFO     | exitcode: 0
[2025-11-23 11:32:43] 2025-11-23 10:03:56,343 | INFO     | exitmsg: OK
[2025-11-23 11:32:43] 2025-11-23 10:03:56,343 | INFO     | cpuconsumptiontime: 250709 s
[2025-11-23 11:32:43] 2025-11-23 10:03:56,343 | INFO     | nevents: 1000
[2025-11-23 11:32:43] 2025-11-23 10:03:56,344 | INFO     | neventsw: 0
[2025-11-23 11:32:43] 2025-11-23 10:03:56,344 | INFO     | pid: 345365
[2025-11-23 11:32:43] 2025-11-23 10:03:56,344 | INFO     | pgrp: 345365
[2025-11-23 11:32:43] 2025-11-23 10:03:56,344 | INFO     | corecount: 4
[2025-11-23 11:32:43] 2025-11-23 10:03:56,344 | INFO     | event service: False
[2025-11-23 11:32:43] 2025-11-23 10:03:56,344 | INFO     | sizes: {0: 2298818, 5: 2299080, 11: 2299136, 63218: 2352373, 63219: 2352372, 63221: 2361444, 63225: 2361628, 63232: 2361874}
[2025-11-23 11:32:43] 2025-11-23 10:03:56,344 | INFO     | --------------------------------------------------
[2025-11-23 11:32:43] 2025-11-23 10:03:56,344 | INFO     | 
[2025-11-23 11:32:43] 2025-11-23 10:03:56,344 | INFO     | executing command: ls -lF /scratch/boinc/var/slot64/slots/0
[2025-11-23 11:32:43] 2025-11-23 10:03:56,366 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 11:32:43] 2025-11-23 10:03:56,367 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 11:32:43] 2025-11-23 10:03:56,367 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 11:32:43] 2025-11-23 10:03:56,367 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 11:32:43] 2025-11-23 10:03:56,367 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 11:32:43] 2025-11-23 10:03:56,367 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 11:32:43] 2025-11-23 10:03:56,367 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 11:32:43] 2025-11-23 10:03:56,367 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 11:32:43] 2025-11-23 10:03:56,368 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 11:32:43] 2025-11-23 10:03:56,368 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 11:32:43] 2025-11-23 10:03:56,368 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 11:32:43] 2025-11-23 10:03:56,368 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 11:32:43] 2025-11-23 10:03:56,368 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 11:32:43] 2025-11-23 10:03:56,368 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 11:32:43] 2025-11-23 10:03:56,368 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 11:32:43] 2025-11-23 10:03:56,368 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 11:32:43] 2025-11-23 10:03:56,368 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 11:32:43] 2025-11-23 10:03:56,368 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 11:32:43] 2025-11-23 10:03:56,368 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 11:32:43] 2025-11-23 10:03:56,368 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 11:32:43] 2025-11-23 10:03:56,369 | INFO     | job 6893864478 has completed (purged errors)
[2025-11-23 11:32:43] 2025-11-23 10:03:56,369 | INFO     | overall cleanup function is called
[2025-11-23 11:32:43] 2025-11-23 10:03:57,381 | INFO     | --- collectZombieJob: --- 10, [345365]
[2025-11-23 11:32:43] 2025-11-23 10:03:57,382 | INFO     | zombie collector waiting for pid 345365
[2025-11-23 11:32:43] 2025-11-23 10:03:57,382 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 11:32:43] 2025-11-23 10:03:57,382 | INFO     | collected zombie processes
[2025-11-23 11:32:43] 2025-11-23 10:03:57,382 | INFO     | will attempt to kill all subprocesses of pid=345365
[2025-11-23 11:32:43] 2025-11-23 10:03:57,759 | INFO     | process IDs to be killed: [345365] (in reverse order)
[2025-11-23 11:32:43] 2025-11-23 10:03:57,872 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 11:32:43] 2025-11-23 10:03:57,872 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 11:32:43] 2025-11-23 10:03:57,886 | INFO     | did not find any defunct processes belonging to 345365
[2025-11-23 11:32:43] 2025-11-23 10:03:57,899 | INFO     | did not find any defunct processes belonging to 345365
[2025-11-23 11:32:43] 2025-11-23 10:03:57,900 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 11:32:43] 2025-11-23 10:03:57,901 | INFO     | ready for new job
[2025-11-23 11:32:43] 2025-11-23 10:03:57,901 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 11:32:43] 2025-11-23 10:03:57,906 | INFO     | ***************************************
[2025-11-23 11:32:43] 2025-11-23 10:03:57,906 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 11:32:43] 2025-11-23 10:03:57,906 | INFO     | ***************************************
[2025-11-23 11:32:43] 2025-11-23 10:03:57,906 | INFO     | 
[2025-11-23 11:32:43] 2025-11-23 10:03:57,910 | INFO     | architecture information:
[2025-11-23 11:32:43] 2025-11-23 10:03:57,911 | INFO     | executing command: cat /etc/os-release
[2025-11-23 11:32:43] 2025-11-23 10:03:57,925 | INFO     | cat /etc/os-release:
[2025-11-23 11:32:43] NAME="CentOS Linux"
[2025-11-23 11:32:43] VERSION="7 (Core)"
[2025-11-23 11:32:43] ID="centos"
[2025-11-23 11:32:43] ID_LIKE="rhel fedora"
[2025-11-23 11:32:43] VERSION_ID="7"
[2025-11-23 11:32:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 11:32:43] ANSI_COLOR="0;31"
[2025-11-23 11:32:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 11:32:43] HOME_URL="https://www.centos.org/"
[2025-11-23 11:32:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 11:32:43] 
[2025-11-23 11:32:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 11:32:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 11:32:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 11:32:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 11:32:43] 
[2025-11-23 11:32:43] 2025-11-23 10:03:57,926 | INFO     | ***************************************
[2025-11-23 11:32:43] 2025-11-23 10:03:58,429 | INFO     | executing command: df -mP /scratch/boinc/var/slot64/slots/0
[2025-11-23 11:32:43] 2025-11-23 10:03:58,444 | INFO     | sufficient remaining disk space (699587887104 B)
[2025-11-23 11:32:43] 2025-11-23 10:03:58,445 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 11:32:43] 2025-11-23 10:03:58,445 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 11:32:43] 2025-11-23 10:03:58,445 | INFO     | update_server=False
[2025-11-23 11:32:43] 2025-11-23 10:03:58,445 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 11:32:43] 2025-11-23 10:03:58,445 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 11:32:43] 2025-11-23 10:03:58,460 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 11:32:43] 2025-11-23 10:03:58,461 | INFO     | aborting loop
[2025-11-23 11:32:43] 2025-11-23 10:03:59,210 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 11:32:43] 2025-11-23 10:03:59,314 | INFO     | all data control threads have been joined
[2025-11-23 11:32:43] 2025-11-23 10:03:59,450 | INFO     | [job] retrieve thread has finished
[2025-11-23 11:32:43] 2025-11-23 10:03:59,466 | INFO     | [job] job monitor thread has finished
[2025-11-23 11:32:43] 2025-11-23 10:03:59,528 | INFO     | [data] copytool_in thread has finished
[2025-11-23 11:32:43] 2025-11-23 10:03:59,699 | INFO     | all job control threads have been joined
[2025-11-23 11:32:43] 2025-11-23 10:03:59,811 | INFO     | all payload control threads have been joined
[2025-11-23 11:32:43] 2025-11-23 10:03:59,833 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 11:32:43] 2025-11-23 10:03:59,947 | INFO     | [payload] failed_post thread has finished
[2025-11-23 11:32:43] 2025-11-23 10:04:00,053 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 11:32:43] 2025-11-23 10:04:00,320 | INFO     | [data] control thread has finished
[2025-11-23 11:32:43] 2025-11-23 10:04:00,451 | INFO     | [data] copytool_out thread has finished
[2025-11-23 11:32:43] 2025-11-23 10:04:00,478 | INFO     | [job] validate thread has finished
[2025-11-23 11:32:43] 2025-11-23 10:04:00,702 | INFO     | [job] control thread has finished
[2025-11-23 11:32:43] 2025-11-23 10:04:00,817 | INFO     | [payload] control thread has finished
[2025-11-23 11:32:43] 2025-11-23 10:04:00,898 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 11:32:43] 2025-11-23 10:04:00,935 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 11:32:43] 2025-11-23 10:04:00,996 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 11:32:43] 2025-11-23 10:04:01,031 | INFO     | [payload] validate_post thread has finished
[2025-11-23 11:32:43] 2025-11-23 10:04:02,000 | INFO     | [job] queue monitor thread has finished
[2025-11-23 11:32:43] 2025-11-23 10:04:03,216 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 11:32:43] 2025-11-23 10:04:28,715 | INFO     | [monitor] cgroup control has ended
[2025-11-23 11:32:43] 2025-11-23 10:04:28,999 | INFO     | PID=338198 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-23 11:32:43] 2025-11-23 10:04:28,999 | INFO     | .. there are 4 such processes running
[2025-11-23 11:32:43] 2025-11-23 10:04:29,000 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 11:32:43] 2025-11-23 10:04:29,000 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 11:32:43] 2025-11-23 10:04:29,000 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 11:32:43] 2025-11-23 10:04:30,008 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23351921960768)>', '<ExcThread(monitor, started 23351676323584)>']
[2025-11-23 11:32:43] 2025-11-23 10:04:31,010 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 11:32:43] 2025-11-23 10:04:31,011 | INFO     | [monitor] control thread has ended
[2025-11-23 11:32:43] 2025-11-23 10:04:35,033 | INFO     | all workflow threads have been joined
[2025-11-23 11:32:43] 2025-11-23 10:04:35,034 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 11:32:43] 2025-11-23 10:04:35,034 | INFO     | traces error code: 0
[2025-11-23 11:32:43] 2025-11-23 10:04:35,034 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 11:32:43] 2025-11-23 10:04:35,179 [wrapper] ==== pilot stdout END ====
[2025-11-23 11:32:43] 2025-11-23 10:04:35,182 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 11:32:43] 2025-11-23 10:04:35,185 [wrapper] pilotpid: 338198
[2025-11-23 11:32:43] 2025-11-23 10:04:35,187 [wrapper] Pilot exit status: 0
[2025-11-23 11:32:43] 2025-11-23 10:04:35,197 [wrapper] pandaids: 6893864478
[2025-11-23 11:32:43] 2025-11-23 10:04:35,274 [wrapper] cleanup supervisor_pilot 1246064 338199
[2025-11-23 11:32:43] 2025-11-23 10:04:35,277 [wrapper] Test setup, not cleaning
[2025-11-23 11:32:43] 2025-11-23 10:04:35,279 [wrapper] apfmon messages muted
[2025-11-23 11:32:43] 2025-11-23 10:04:35,282 [wrapper] ==== wrapper stdout END ====
[2025-11-23 11:32:43] 2025-11-23 10:04:35,284 [wrapper] ==== wrapper stderr END ====
[2025-11-23 11:32:43]  *** Error codes and diagnostics ***
[2025-11-23 11:32:43]     "exeErrorCode": 0,
[2025-11-23 11:32:43]     "exeErrorDiag": "",
[2025-11-23 11:32:43]     "pilotErrorCode": 0,
[2025-11-23 11:32:43]     "pilotErrorDiag": "",
[2025-11-23 11:32:43]  *** Listing of results directory ***
[2025-11-23 11:32:43] total 1315676
[2025-11-23 11:32:43] -rw-r--r-- 1 boinc boinc    576529 Nov 20 15:06 pilot3.tar.gz
[2025-11-23 11:32:43] -rwx------ 1 boinc boinc     36292 Nov 20 15:27 runpilot2-wrapper.sh
[2025-11-23 11:32:43] -rw-r--r-- 1 boinc boinc      5112 Nov 20 15:27 queuedata.json
[2025-11-23 11:32:43] -rw-r--r-- 1 boinc boinc       100 Nov 22 17:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 11:32:43] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 17:29 run_atlas
[2025-11-23 11:32:43] -rw-r--r-- 1 boinc boinc       105 Nov 22 17:29 job.xml
[2025-11-23 11:32:43] -rw-r--r-- 2 boinc boinc 409481476 Nov 22 17:29 EVNT.47493127._000609.pool.root.1
[2025-11-23 11:32:43] -rw-r--r-- 1 boinc boinc      6634 Nov 22 17:29 init_data.xml
[2025-11-23 11:32:43] -rw-r--r-- 2 boinc boinc     15847 Nov 22 17:29 start_atlas.sh
[2025-11-23 11:32:43] drwxrwx--x 2 boinc boinc      4096 Nov 22 17:29 shared
[2025-11-23 11:32:43] -rw-r--r-- 2 boinc boinc    590096 Nov 22 17:29 input.tar.gz
[2025-11-23 11:32:43] -rw-r--r-- 1 boinc boinc         0 Nov 22 17:29 boinc_lockfile
[2025-11-23 11:32:43] -rw-r--r-- 1 boinc boinc      2786 Nov 22 17:29 pandaJob.out
[2025-11-23 11:32:43] -rw------- 1 boinc boinc    989768 Nov 22 17:29 agis_schedconf.cvmfs.json
[2025-11-23 11:32:43] drwx------ 5 boinc boinc      4096 Nov 22 17:29 pilot3
[2025-11-23 11:32:43] -rw-r--r-- 1 boinc boinc       532 Nov 23 10:56 boinc_task_state.xml
[2025-11-23 11:32:43] -rw------- 1 boinc boinc 912631042 Nov 23 11:03 HITS.47523449._006082.pool.root.1
[2025-11-23 11:32:43] -rw------- 1 boinc boinc      1046 Nov 23 11:03 memory_monitor_summary.json
[2025-11-23 11:32:43] -rw------- 1 boinc boinc   1526164 Nov 23 11:03 agis_ddmendpoints.agis.ALL.json
[2025-11-23 11:32:43] -rw------- 1 boinc boinc   1770260 Nov 23 11:03 log.47523449._006082.job.log.tgz.1
[2025-11-23 11:32:43] -rw------- 1 boinc boinc      8629 Nov 23 11:03 heartbeat.json
[2025-11-23 11:32:43] -rw------- 1 boinc boinc        95 Nov 23 11:04 pilot_heartbeat.json
[2025-11-23 11:32:43] -rw------- 1 boinc boinc      4832 Nov 23 11:04 pilotlog.txt
[2025-11-23 11:32:43] -rw------- 1 boinc boinc   8834109 Nov 23 11:04 log.47523449._006082.job.log.1
[2025-11-23 11:32:43] -rw------- 1 boinc boinc       353 Nov 23 11:04 output.list
[2025-11-23 11:32:43] -rw-r--r-- 1 boinc boinc       620 Nov 23 11:04 runtime_log
[2025-11-23 11:32:43] -rw------- 1 boinc boinc  10629120 Nov 23 11:04 result.tar.gz
[2025-11-23 11:32:43] -rw-r--r-- 1 boinc boinc      9206 Nov 23 11:04 runtime_log.err
[2025-11-23 11:32:43] -rw------- 1 boinc boinc       670 Nov 23 11:04 MnCMDmCoKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmm4HKDmEioz8n.diag
[2025-11-23 11:32:43] -rw-r--r-- 1 boinc boinc        28 Nov 23 11:32 wrapper_checkpoint.txt
[2025-11-23 11:32:43] -rw-r--r-- 1 boinc boinc      8192 Nov 23 11:32 boinc_mmap_file
[2025-11-23 11:32:43] -rw-r--r-- 1 boinc boinc     21111 Nov 23 11:32 stderr.txt
[2025-11-23 11:32:43] HITS file was successfully produced:
[2025-11-23 11:32:43] -rw------- 1 boinc boinc 912631042 Nov 23 11:03 shared/HITS.pool.root.1
[2025-11-23 11:32:43]  *** Contents of shared directory: ***
[2025-11-23 11:32:43] total 1302116
[2025-11-23 11:32:43] -rw-r--r-- 2 boinc boinc 409481476 Nov 22 17:29 ATLAS.root_0
[2025-11-23 11:32:43] -rw-r--r-- 2 boinc boinc     15847 Nov 22 17:29 start_atlas.sh
[2025-11-23 11:32:43] -rw-r--r-- 2 boinc boinc    590096 Nov 22 17:29 input.tar.gz
[2025-11-23 11:32:43] -rw------- 1 boinc boinc 912631042 Nov 23 11:03 HITS.pool.root.1
[2025-11-23 11:32:43] -rw------- 1 boinc boinc  10629120 Nov 23 11:04 result.tar.gz
11:32:45 (334420): run_atlas exited; CPU time 253188.478013
11:32:45 (334420): called boinc_finish(0)

</stderr_txt>
]]>

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