Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:42:05 (3155034): wrapper (7.7.26015): starting
18:42:05 (3155034): wrapper: running run_atlas (--nthreads 4)
[2025-11-23 18:42:05] Arguments: --nthreads 4
[2025-11-23 18:42:05] Threads: 4
[2025-11-23 18:42:05] Checking for CVMFS
[2025-11-23 18:42:05] No cvmfs_config command found, will try listing directly
[2025-11-23 18:42:05] CVMFS is ok
[2025-11-23 18:42:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 18:42:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 18:42:05] Further information can be found at the LHC@home message board.
[2025-11-23 18:42:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 18:42:05] Checking for apptainer binary...
[2025-11-23 18:42:05] which: no apptainer in ((null))
[2025-11-23 18:42:05] apptainer is not installed, using version from CVMFS
[2025-11-23 18:42:05] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 18:42:05] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot128/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2025-11-23 18:42:05] apptainer works
[2025-11-23 18:42:05] Set ATHENA_PROC_NUMBER=4
[2025-11-23 18:42:05] Set ATHENA_CORE_NUMBER=4
[2025-11-23 18:42:05] Starting ATLAS job with PandaID=6893835351
[2025-11-23 18:42:05] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot128/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 11:06:05]  *** The last 200 lines of the pilot log: ***
[2025-11-24 11:06:05] 2025-11-24 10:03:11,686 | INFO     | time since job start (58851s) is within the limit (172800.0s)
[2025-11-24 11:06:05] 2025-11-24 10:03:11,702 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2683.136359374999
[2025-11-24 11:06:05] 2025-11-24 10:03:11,729 | INFO     | using path: /scratch/boinc/var/slot128/slots/0/PanDA_Pilot-6893835351/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 11:06:05] 2025-11-24 10:03:11,730 | INFO     | extracted standard info from prmon json
[2025-11-24 11:06:05] 2025-11-24 10:03:11,730 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 11:06:05] 2025-11-24 10:03:11,730 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 11:06:05] 2025-11-24 10:03:11,747 | INFO     | fitting pss+swap vs Time
[2025-11-24 11:06:05] 2025-11-24 10:03:11,748 | INFO     | sum of square deviations: 277785460468.99164
[2025-11-24 11:06:05] 2025-11-24 10:03:11,770 | INFO     | sum of deviations: 723922647846.891
[2025-11-24 11:06:05] 2025-11-24 10:03:11,770 | INFO     | mean x: 1763949146.545643
[2025-11-24 11:06:05] 2025-11-24 10:03:11,770 | INFO     | mean y: 2268956.093360996
[2025-11-24 11:06:05] 2025-11-24 10:03:11,770 | INFO     | intersect: -4594669755.812798
[2025-11-24 11:06:05] 2025-11-24 10:03:11,771 | INFO     | chi2: 4.775933118972966
[2025-11-24 11:06:05] 2025-11-24 10:03:11,773 | INFO     | sum of square deviations: 273485467683.98117
[2025-11-24 11:06:05] 2025-11-24 10:03:11,795 | INFO     | sum of deviations: 948938165190.2252
[2025-11-24 11:06:05] 2025-11-24 10:03:11,796 | INFO     | mean x: 1763948994.045881
[2025-11-24 11:06:05] 2025-11-24 10:03:11,796 | INFO     | mean y: 2276933.4494264857
[2025-11-24 11:06:05] 2025-11-24 10:03:11,796 | INFO     | intersect: -6118262253.054068
[2025-11-24 11:06:05] 2025-11-24 10:03:11,797 | INFO     | chi2: 2.1059209846915716
[2025-11-24 11:06:05] 2025-11-24 10:03:11,797 | INFO     | current chi2=2.1059209846915716 (change=55.9055595580778 %)
[2025-11-24 11:06:05] 2025-11-24 10:03:11,798 | INFO     | sum of square deviations: 269230080386.47186
[2025-11-24 11:06:05] 2025-11-24 10:03:11,820 | INFO     | sum of deviations: 951369864210.9818
[2025-11-24 11:06:05] 2025-11-24 10:03:11,820 | INFO     | mean x: 1763948841.5461216
[2025-11-24 11:06:05] 2025-11-24 10:03:11,820 | INFO     | mean y: 2277018.886792453
[2025-11-24 11:06:05] 2025-11-24 10:03:11,820 | INFO     | intersect: -6230933502.9386
[2025-11-24 11:06:05] 2025-11-24 10:03:11,821 | INFO     | chi2: 2.0738420069367938
[2025-11-24 11:06:05] 2025-11-24 10:03:11,822 | INFO     | current chi2=2.0738420069367938 (change=1.5232754689262984 %)
[2025-11-24 11:06:05] 2025-11-24 10:03:11,822 | INFO     | right removable region: 953
[2025-11-24 11:06:05] 2025-11-24 10:03:11,823 | INFO     | sum of square deviations: 273485440843.98123
[2025-11-24 11:06:05] 2025-11-24 10:03:11,846 | INFO     | sum of deviations: 539841309128.6177
[2025-11-24 11:06:05] 2025-11-24 10:03:11,846 | INFO     | mean x: 1763949299.045881
[2025-11-24 11:06:05] 2025-11-24 10:03:11,846 | INFO     | mean y: 2275473.7132429616
[2025-11-24 11:06:05] 2025-11-24 10:03:11,846 | INFO     | intersect: -3479638210.228272
[2025-11-24 11:06:05] 2025-11-24 10:03:11,847 | INFO     | chi2: 2.807907951219054
[2025-11-24 11:06:05] 2025-11-24 10:03:11,847 | INFO     | current chi2=2.807907951219054 (change=41.207134160562184 %)
[2025-11-24 11:06:05] 2025-11-24 10:03:11,849 | INFO     | sum of square deviations: 269230026706.4719
[2025-11-24 11:06:05] 2025-11-24 10:03:11,870 | INFO     | sum of deviations: 513372374942.48627
[2025-11-24 11:06:05] 2025-11-24 10:03:11,871 | INFO     | mean x: 1763949451.5461216
[2025-11-24 11:06:05] 2025-11-24 10:03:11,871 | INFO     | mean y: 2276421.8071278827
[2025-11-24 11:06:05] 2025-11-24 10:03:11,871 | INFO     | intersect: -3361252268.8690376
[2025-11-24 11:06:05] 2025-11-24 10:03:11,872 | INFO     | chi2: 2.7941266358174883
[2025-11-24 11:06:05] 2025-11-24 10:03:11,872 | INFO     | current chi2=2.7941266358174883 (change=0.4908036745144161 %)
[2025-11-24 11:06:05] 2025-11-24 10:03:11,872 | INFO     | left removable region: 20
[2025-11-24 11:06:05] 2025-11-24 10:03:11,873 | INFO     | sum of square deviations: 251839189829.92532
[2025-11-24 11:06:05] 2025-11-24 10:03:11,893 | INFO     | sum of deviations: 705433033212.0961
[2025-11-24 11:06:05] 2025-11-24 10:03:11,893 | INFO     | mean x: 1763949421.0471597
[2025-11-24 11:06:05] 2025-11-24 10:03:11,893 | INFO     | mean y: 2285840.1114683817
[2025-11-24 11:06:05] 2025-11-24 10:03:11,893 | INFO     | intersect: -4938756860.043201
[2025-11-24 11:06:05] 2025-11-24 10:03:11,894 | INFO     | chi2: 0.07304765490456498
[2025-11-24 11:06:05] 2025-11-24 10:03:11,894 | INFO     | current memory leak: 2.80 B/s (using 933 data points, chi2=0.07)
[2025-11-24 11:06:05] 2025-11-24 10:03:11,896 | INFO     | could have reported an average CPU frequency of 2678 MHz (36 samples)
[2025-11-24 11:06:05] 2025-11-24 10:03:11,896 | INFO     | ..............................
[2025-11-24 11:06:05] 2025-11-24 10:03:11,897 | INFO     | . Timing measurements:
[2025-11-24 11:06:05] 2025-11-24 10:03:11,897 | INFO     | . get job = 0 s
[2025-11-24 11:06:05] 2025-11-24 10:03:11,897 | INFO     | . initial setup = 1 s
[2025-11-24 11:06:05] 2025-11-24 10:03:11,897 | INFO     | . payload setup = 9 s
[2025-11-24 11:06:05] 2025-11-24 10:03:11,897 | INFO     | . stage-in = 0 s
[2025-11-24 11:06:05] 2025-11-24 10:03:11,897 | INFO     | . payload execution = 58809 s
[2025-11-24 11:06:05] 2025-11-24 10:03:11,897 | INFO     | . stage-out = 2 s
[2025-11-24 11:06:05] 2025-11-24 10:03:11,897 | INFO     | . log creation = 0 s
[2025-11-24 11:06:05] 2025-11-24 10:03:11,897 | INFO     | ..............................
[2025-11-24 11:06:05] 2025-11-24 10:03:12,347 | INFO     | 
[2025-11-24 11:06:05] 2025-11-24 10:03:12,347 | INFO     | job summary report
[2025-11-24 11:06:05] 2025-11-24 10:03:12,347 | INFO     | --------------------------------------------------
[2025-11-24 11:06:05] 2025-11-24 10:03:12,347 | INFO     | PanDA job id: 6893835351
[2025-11-24 11:06:05] 2025-11-24 10:03:12,347 | INFO     | task id: 47523449
[2025-11-24 11:06:05] 2025-11-24 10:03:12,347 | INFO     | errors: (none)
[2025-11-24 11:06:05] 2025-11-24 10:03:12,347 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 11:06:05] 2025-11-24 10:03:12,348 | INFO     | pilot state: finished 
[2025-11-24 11:06:05] 2025-11-24 10:03:12,348 | INFO     | transexitcode: 0
[2025-11-24 11:06:05] 2025-11-24 10:03:12,348 | INFO     | exeerrorcode: 0
[2025-11-24 11:06:05] 2025-11-24 10:03:12,348 | INFO     | exeerrordiag: 
[2025-11-24 11:06:05] 2025-11-24 10:03:12,348 | INFO     | exitcode: 0
[2025-11-24 11:06:05] 2025-11-24 10:03:12,348 | INFO     | exitmsg: OK
[2025-11-24 11:06:05] 2025-11-24 10:03:12,348 | INFO     | cpuconsumptiontime: 234979 s
[2025-11-24 11:06:05] 2025-11-24 10:03:12,348 | INFO     | nevents: 1000
[2025-11-24 11:06:05] 2025-11-24 10:03:12,348 | INFO     | neventsw: 0
[2025-11-24 11:06:05] 2025-11-24 10:03:12,348 | INFO     | pid: 3166629
[2025-11-24 11:06:05] 2025-11-24 10:03:12,348 | INFO     | pgrp: 3166629
[2025-11-24 11:06:05] 2025-11-24 10:03:12,349 | INFO     | corecount: 4
[2025-11-24 11:06:05] 2025-11-24 10:03:12,349 | INFO     | event service: False
[2025-11-24 11:06:05] 2025-11-24 10:03:12,349 | INFO     | sizes: {0: 2298644, 1: 2298843, 8: 2299105, 12: 2299133, 58822: 2353751, 58825: 2362769, 58827: 2362953, 58834: 2363199}
[2025-11-24 11:06:05] 2025-11-24 10:03:12,349 | INFO     | --------------------------------------------------
[2025-11-24 11:06:05] 2025-11-24 10:03:12,349 | INFO     | 
[2025-11-24 11:06:05] 2025-11-24 10:03:12,349 | INFO     | executing command: ls -lF /scratch/boinc/var/slot128/slots/0
[2025-11-24 11:06:05] 2025-11-24 10:03:12,383 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 11:06:05] 2025-11-24 10:03:12,383 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 11:06:05] 2025-11-24 10:03:12,383 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 11:06:05] 2025-11-24 10:03:12,383 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 11:06:05] 2025-11-24 10:03:12,383 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 11:06:05] 2025-11-24 10:03:12,384 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 11:06:05] 2025-11-24 10:03:12,384 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 11:06:05] 2025-11-24 10:03:12,384 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 11:06:05] 2025-11-24 10:03:12,384 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 11:06:05] 2025-11-24 10:03:12,384 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 11:06:05] 2025-11-24 10:03:12,384 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 11:06:05] 2025-11-24 10:03:12,384 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 11:06:05] 2025-11-24 10:03:12,384 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 11:06:05] 2025-11-24 10:03:12,384 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 11:06:05] 2025-11-24 10:03:12,384 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 11:06:05] 2025-11-24 10:03:12,384 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 11:06:05] 2025-11-24 10:03:12,385 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 11:06:05] 2025-11-24 10:03:12,385 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 11:06:05] 2025-11-24 10:03:12,385 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 11:06:05] 2025-11-24 10:03:12,385 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 11:06:05] 2025-11-24 10:03:12,385 | INFO     | job 6893835351 has completed (purged errors)
[2025-11-24 11:06:05] 2025-11-24 10:03:12,385 | INFO     | overall cleanup function is called
[2025-11-24 11:06:05] 2025-11-24 10:03:13,404 | INFO     | --- collectZombieJob: --- 10, [3166629]
[2025-11-24 11:06:05] 2025-11-24 10:03:13,404 | INFO     | zombie collector waiting for pid 3166629
[2025-11-24 11:06:05] 2025-11-24 10:03:13,404 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 11:06:05] 2025-11-24 10:03:13,404 | INFO     | collected zombie processes
[2025-11-24 11:06:05] 2025-11-24 10:03:13,405 | INFO     | will attempt to kill all subprocesses of pid=3166629
[2025-11-24 11:06:05] 2025-11-24 10:03:14,292 | INFO     | PID=3159135 has CPU usage=25.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-24 11:06:05] 2025-11-24 10:03:14,293 | INFO     | .. there are 10 such processes running
[2025-11-24 11:06:05] 2025-11-24 10:03:14,860 | INFO     | process IDs to be killed: [3166629] (in reverse order)
[2025-11-24 11:06:05] 2025-11-24 10:03:15,157 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 11:06:05] 2025-11-24 10:03:15,157 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 11:06:05] 2025-11-24 10:03:15,192 | INFO     | did not find any defunct processes belonging to 3166629
[2025-11-24 11:06:05] 2025-11-24 10:03:15,227 | INFO     | did not find any defunct processes belonging to 3166629
[2025-11-24 11:06:05] 2025-11-24 10:03:15,228 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 11:06:05] 2025-11-24 10:03:15,228 | INFO     | ready for new job
[2025-11-24 11:06:05] 2025-11-24 10:03:15,229 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 11:06:05] 2025-11-24 10:03:15,235 | INFO     | ***************************************
[2025-11-24 11:06:05] 2025-11-24 10:03:15,235 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 11:06:05] 2025-11-24 10:03:15,235 | INFO     | ***************************************
[2025-11-24 11:06:05] 2025-11-24 10:03:15,235 | INFO     | 
[2025-11-24 11:06:05] 2025-11-24 10:03:15,244 | INFO     | architecture information:
[2025-11-24 11:06:05] 2025-11-24 10:03:15,245 | INFO     | executing command: cat /etc/os-release
[2025-11-24 11:06:05] 2025-11-24 10:03:15,272 | INFO     | cat /etc/os-release:
[2025-11-24 11:06:05] NAME="CentOS Linux"
[2025-11-24 11:06:05] VERSION="7 (Core)"
[2025-11-24 11:06:05] ID="centos"
[2025-11-24 11:06:05] ID_LIKE="rhel fedora"
[2025-11-24 11:06:05] VERSION_ID="7"
[2025-11-24 11:06:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 11:06:05] ANSI_COLOR="0;31"
[2025-11-24 11:06:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 11:06:05] HOME_URL="https://www.centos.org/"
[2025-11-24 11:06:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 11:06:05] 
[2025-11-24 11:06:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 11:06:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 11:06:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 11:06:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 11:06:05] 
[2025-11-24 11:06:05] 2025-11-24 10:03:15,272 | INFO     | ***************************************
[2025-11-24 11:06:05] 2025-11-24 10:03:15,775 | INFO     | executing command: df -mP /scratch/boinc/var/slot128/slots/0
[2025-11-24 11:06:05] 2025-11-24 10:03:15,798 | INFO     | sufficient remaining disk space (3281152638976 B)
[2025-11-24 11:06:05] 2025-11-24 10:03:15,798 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 11:06:05] 2025-11-24 10:03:15,799 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 11:06:05] 2025-11-24 10:03:15,799 | INFO     | update_server=False
[2025-11-24 11:06:05] 2025-11-24 10:03:15,799 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 11:06:05] 2025-11-24 10:03:15,799 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 11:06:05] 2025-11-24 10:03:15,799 | INFO     | aborting loop
[2025-11-24 11:06:05] 2025-11-24 10:03:15,803 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 11:06:05] 2025-11-24 10:03:16,099 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 11:06:05] 2025-11-24 10:03:16,142 | INFO     | all data control threads have been joined
[2025-11-24 11:06:05] 2025-11-24 10:03:16,259 | INFO     | all job control threads have been joined
[2025-11-24 11:06:05] 2025-11-24 10:03:16,323 | INFO     | all payload control threads have been joined
[2025-11-24 11:06:05] 2025-11-24 10:03:16,804 | INFO     | [job] retrieve thread has finished
[2025-11-24 11:06:05] 2025-11-24 10:03:16,805 | INFO     | [job] job monitor thread has finished
[2025-11-24 11:06:05] 2025-11-24 10:03:16,897 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 11:06:05] 2025-11-24 10:03:17,012 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 11:06:05] 2025-11-24 10:03:17,147 | INFO     | [data] control thread has finished
[2025-11-24 11:06:05] 2025-11-24 10:03:17,173 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 11:06:05] 2025-11-24 10:03:17,265 | INFO     | [job] control thread has finished
[2025-11-24 11:06:05] 2025-11-24 10:03:17,294 | INFO     | [payload] failed_post thread has finished
[2025-11-24 11:06:05] 2025-11-24 10:03:17,329 | INFO     | [payload] control thread has finished
[2025-11-24 11:06:05] 2025-11-24 10:03:17,345 | INFO     | [payload] validate_post thread has finished
[2025-11-24 11:06:05] 2025-11-24 10:03:17,539 | INFO     | [job] validate thread has finished
[2025-11-24 11:06:05] 2025-11-24 10:03:17,712 | INFO     | [data] copytool_in thread has finished
[2025-11-24 11:06:05] 2025-11-24 10:03:17,754 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 11:06:05] 2025-11-24 10:03:18,018 | INFO     | [job] queue monitor thread has finished
[2025-11-24 11:06:05] 2025-11-24 10:03:18,070 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 11:06:05] 2025-11-24 10:03:18,104 | INFO     | [data] copytool_out thread has finished
[2025-11-24 11:06:05] 2025-11-24 10:03:19,809 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 11:06:05] 2025-11-24 10:03:45,377 | INFO     | 58856s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-24 11:06:05] 2025-11-24 10:03:47,440 | INFO     | PID=3159135 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 11:06:05] 2025-11-24 10:03:47,440 | INFO     | .. there are 10 such processes running
[2025-11-24 11:06:05] 2025-11-24 10:03:47,441 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 11:06:05] 2025-11-24 10:03:47,441 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 11:06:05] 2025-11-24 10:03:47,441 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 11:06:05] 2025-11-24 10:03:58,183 | INFO     | [monitor] cgroup control has ended
[2025-11-24 11:06:05] 2025-11-24 10:03:58,305 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23318062487360)>', '<ExcThread(monitor, started 23317824108288)>']
[2025-11-24 11:06:05] 2025-11-24 10:03:58,495 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 11:06:05] 2025-11-24 10:03:58,495 | INFO     | [monitor] control thread has ended
[2025-11-24 11:06:05] 2025-11-24 10:04:03,331 | INFO     | all workflow threads have been joined
[2025-11-24 11:06:05] 2025-11-24 10:04:03,331 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 11:06:05] 2025-11-24 10:04:03,331 | INFO     | traces error code: 0
[2025-11-24 11:06:05] 2025-11-24 10:04:03,331 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 11:06:05] 2025-11-24 10:04:03,485 [wrapper] ==== pilot stdout END ====
[2025-11-24 11:06:05] 2025-11-24 10:04:03,490 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 11:06:05] 2025-11-24 10:04:03,494 [wrapper] pilotpid: 3159135
[2025-11-24 11:06:05] 2025-11-24 10:04:03,499 [wrapper] Pilot exit status: 0
[2025-11-24 11:06:05] 2025-11-24 10:04:03,515 [wrapper] pandaids: 6893835351
[2025-11-24 11:06:05] 2025-11-24 10:04:03,703 [wrapper] cleanup supervisor_pilot  710621 3159136
[2025-11-24 11:06:05] 2025-11-24 10:04:03,707 [wrapper] Test setup, not cleaning
[2025-11-24 11:06:05] 2025-11-24 10:04:03,711 [wrapper] apfmon messages muted
[2025-11-24 11:06:05] 2025-11-24 10:04:03,715 [wrapper] ==== wrapper stdout END ====
[2025-11-24 11:06:05] 2025-11-24 10:04:03,718 [wrapper] ==== wrapper stderr END ====
[2025-11-24 11:06:05]  *** Error codes and diagnostics ***
[2025-11-24 11:06:05]     "exeErrorCode": 0,
[2025-11-24 11:06:05]     "exeErrorDiag": "",
[2025-11-24 11:06:05]     "pilotErrorCode": 0,
[2025-11-24 11:06:05]     "pilotErrorDiag": "",
[2025-11-24 11:06:05]  *** Listing of results directory ***
[2025-11-24 11:06:05] total 1330520
[2025-11-24 11:06:05] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-24 11:06:05] -rwx------ 1 boinc boinc     36292 Nov 20 11:14 runpilot2-wrapper.sh
[2025-11-24 11:06:05] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:15 queuedata.json
[2025-11-24 11:06:05] -rw-r--r-- 1 boinc boinc       100 Nov 23 18:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 11:06:05] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 18:41 run_atlas
[2025-11-24 11:06:05] -rw-r--r-- 1 boinc boinc       105 Nov 23 18:41 job.xml
[2025-11-24 11:06:05] -rw-r--r-- 1 boinc boinc      6687 Nov 23 18:42 init_data.xml
[2025-11-24 11:06:05] -rw-r--r-- 2 boinc boinc 411542604 Nov 23 18:42 EVNT.47493127._000085.pool.root.1
[2025-11-24 11:06:05] -rw-r--r-- 2 boinc boinc     15847 Nov 23 18:42 start_atlas.sh
[2025-11-24 11:06:05] drwxrwx--x 2 boinc boinc      4096 Nov 23 18:42 shared
[2025-11-24 11:06:05] -rw-r--r-- 2 boinc boinc    590103 Nov 23 18:42 input.tar.gz
[2025-11-24 11:06:05] -rw-r--r-- 1 boinc boinc         0 Nov 23 18:42 boinc_lockfile
[2025-11-24 11:06:05] -rw-r--r-- 1 boinc boinc      2784 Nov 23 18:42 pandaJob.out
[2025-11-24 11:06:05] -rw------- 1 boinc boinc    989786 Nov 23 18:42 agis_schedconf.cvmfs.json
[2025-11-24 11:06:05] drwx------ 5 boinc boinc      4096 Nov 23 18:42 pilot3
[2025-11-24 11:06:05] -rw-r--r-- 1 boinc boinc       532 Nov 24 10:56 boinc_task_state.xml
[2025-11-24 11:06:05] -rw------- 1 boinc boinc 927493127 Nov 24 11:02 HITS.47523449._000845.pool.root.1
[2025-11-24 11:06:05] -rw------- 1 boinc boinc        95 Nov 24 11:02 pilot_heartbeat.json
[2025-11-24 11:06:05] -rw------- 1 boinc boinc      1039 Nov 24 11:02 memory_monitor_summary.json
[2025-11-24 11:06:05] -rw------- 1 boinc boinc   1526164 Nov 24 11:03 agis_ddmendpoints.agis.ALL.json
[2025-11-24 11:06:05] -rw------- 1 boinc boinc   1698675 Nov 24 11:03 log.47523449._000845.job.log.tgz.1
[2025-11-24 11:06:05] -rw------- 1 boinc boinc      8607 Nov 24 11:03 heartbeat.json
[2025-11-24 11:06:05] -rw------- 1 boinc boinc      4952 Nov 24 11:04 pilotlog.txt
[2025-11-24 11:06:05] -rw------- 1 boinc boinc   8046221 Nov 24 11:04 log.47523449._000845.job.log.1
[2025-11-24 11:06:05] -rw------- 1 boinc boinc       353 Nov 24 11:04 output.list
[2025-11-24 11:06:05] -rw-r--r-- 1 boinc boinc       620 Nov 24 11:04 runtime_log
[2025-11-24 11:06:05] -rw------- 1 boinc boinc   9768960 Nov 24 11:04 result.tar.gz
[2025-11-24 11:06:05] -rw-r--r-- 1 boinc boinc      9223 Nov 24 11:04 runtime_log.err
[2025-11-24 11:06:05] -rw------- 1 boinc boinc       671 Nov 24 11:04 8MBNDmcrGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHFHKDmC12pBn.diag
[2025-11-24 11:06:05] -rw-r--r-- 1 boinc boinc        28 Nov 24 11:06 wrapper_checkpoint.txt
[2025-11-24 11:06:05] -rw-r--r-- 1 boinc boinc      8192 Nov 24 11:06 boinc_mmap_file
[2025-11-24 11:06:05] -rw-r--r-- 1 boinc boinc     21234 Nov 24 11:06 stderr.txt
[2025-11-24 11:06:05] HITS file was successfully produced:
[2025-11-24 11:06:05] -rw------- 1 boinc boinc 927493127 Nov 24 11:02 shared/HITS.pool.root.1
[2025-11-24 11:06:05]  *** Contents of shared directory: ***
[2025-11-24 11:06:05] total 1317800
[2025-11-24 11:06:05] -rw-r--r-- 2 boinc boinc 411542604 Nov 23 18:42 ATLAS.root_0
[2025-11-24 11:06:05] -rw-r--r-- 2 boinc boinc     15847 Nov 23 18:42 start_atlas.sh
[2025-11-24 11:06:05] -rw-r--r-- 2 boinc boinc    590103 Nov 23 18:42 input.tar.gz
[2025-11-24 11:06:05] -rw------- 1 boinc boinc 927493127 Nov 24 11:02 HITS.pool.root.1
[2025-11-24 11:06:05] -rw------- 1 boinc boinc   9768960 Nov 24 11:04 result.tar.gz
11:06:06 (3155034): run_atlas exited; CPU time 237960.293135
11:06:06 (3155034): called boinc_finish(0)

</stderr_txt>
]]>

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