Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:45:53 (3352195): wrapper (7.7.26015): starting
01:45:53 (3352195): wrapper: running run_atlas (--nthreads 3)
[2025-11-21 01:45:53] Arguments: --nthreads 3
[2025-11-21 01:45:53] Threads: 3
[2025-11-21 01:45:53] Checking for CVMFS
[2025-11-21 01:45:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 01:45:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 01:45:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 01:45:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 01:45:53] 2.9.2.0 16720 712 66844 153102 0 88 34441887 36864000 0 130560 0 10022834 99.999 15207 659 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 01:45:53] CVMFS is ok
[2025-11-21 01:45:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 01:45:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 01:45:53] Further information can be found at the LHC@home message board.
[2025-11-21 01:45:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 01:45:53] Checking for apptainer binary...
[2025-11-21 01:45:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 01:45:53] Running /usr/bin/apptainer --version
[2025-11-21 01:45:53] apptainer version 1.4.1-1.1
[2025-11-21 01:45:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 01:45:53] thA335
[2025-11-21 01:45:53] apptainer works
[2025-11-21 01:45:53] Set ATHENA_PROC_NUMBER=3
[2025-11-21 01:45:53] Set ATHENA_CORE_NUMBER=3
[2025-11-21 01:45:53] Starting ATLAS job with PandaID=6891561011
[2025-11-21 01:45:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 01:50:10]  *** The last 200 lines of the pilot log: ***
[2025-11-21 01:50:10] 2025-11-21 00:49:22,645 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 01:50:10] 2025-11-21 00:49:22,645 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 01:50:10] 2025-11-21 00:49:22,645 | INFO     | update_server=False
[2025-11-21 01:50:10] 2025-11-21 00:49:22,645 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 01:50:10] 2025-11-21 00:49:22,645 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 01:50:10] 2025-11-21 00:49:22,645 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 01:50:10] 2025-11-21 00:49:22,646 | INFO     | aborting loop
[2025-11-21 01:50:10] 2025-11-21 00:49:23,218 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 01:50:10] 2025-11-21 00:49:23,351 | INFO     | all job control threads have been joined
[2025-11-21 01:50:10] 2025-11-21 00:49:23,466 | INFO     | all data control threads have been joined
[2025-11-21 01:50:10] 2025-11-21 00:49:23,647 | INFO     | [job] queue monitor thread has finished
[2025-11-21 01:50:10] 2025-11-21 00:49:23,650 | INFO     | [job] retrieve thread has finished
[2025-11-21 01:50:10] 2025-11-21 00:49:23,651 | INFO     | [job] job monitor thread has finished
[2025-11-21 01:50:10] 2025-11-21 00:49:23,690 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 01:50:10] 2025-11-21 00:49:23,901 | INFO     | [payload] failed_post thread has finished
[2025-11-21 01:50:10] 2025-11-21 00:49:23,912 | INFO     | all payload control threads have been joined
[2025-11-21 01:50:10] 2025-11-21 00:49:24,339 | INFO     | [data] copytool_in thread has finished
[2025-11-21 01:50:10] 2025-11-21 00:49:24,357 | INFO     | [job] control thread has finished
[2025-11-21 01:50:10] 2025-11-21 00:49:24,472 | INFO     | [data] control thread has finished
[2025-11-21 01:50:10] 2025-11-21 00:49:24,757 | INFO     | [payload] validate_post thread has finished
[2025-11-21 01:50:10] 2025-11-21 00:49:24,831 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 01:50:10] 2025-11-21 00:49:24,859 | INFO     | [job] validate thread has finished
[2025-11-21 01:50:10] 2025-11-21 00:49:24,918 | INFO     | [payload] control thread has finished
[2025-11-21 01:50:10] 2025-11-21 00:49:24,926 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 01:50:10] 2025-11-21 00:49:24,989 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 01:50:10] 2025-11-21 00:49:25,223 | INFO     | [data] copytool_out thread has finished
[2025-11-21 01:50:10] 2025-11-21 00:49:25,529 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 01:50:10] 2025-11-21 00:49:29,536 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 01:50:10] 2025-11-21 00:49:52,473 | INFO     | PID=3355923 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 01:50:10] 2025-11-21 00:49:52,473 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 01:50:10] 2025-11-21 00:49:52,473 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 01:50:10] 2025-11-21 00:49:52,473 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 01:50:10] 2025-11-21 00:50:03,608 | INFO     | [monitor] cgroup control has ended
[2025-11-21 01:50:10] 2025-11-21 00:50:05,383 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139683869894464)>', '<ExcThread(monitor, started 139682922878720)>']
[2025-11-21 01:50:10] 2025-11-21 00:50:05,535 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 01:50:10] 2025-11-21 00:50:05,535 | INFO     | [monitor] control thread has ended
[2025-11-21 01:50:10] 2025-11-21 00:50:10,409 | INFO     | all workflow threads have been joined
[2025-11-21 01:50:10] 2025-11-21 00:50:10,410 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 01:50:10] 2025-11-21 00:50:10,410 | INFO     | traces error code: 0
[2025-11-21 01:50:10] 2025-11-21 00:50:10,411 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 01:50:10] 2025-11-21 00:50:10,457 [wrapper] ==== pilot stdout END ====
[2025-11-21 01:50:10] 2025-11-21 00:50:10,460 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 01:50:10] 2025-11-21 00:50:10,463 [wrapper] pilotpid: 3355923
[2025-11-21 01:50:10] 2025-11-21 00:50:10,466 [wrapper] Pilot exit status: 0
[2025-11-21 01:50:10] 2025-11-21 00:50:10,474 [wrapper] pandaids: 6891561011
[2025-11-21 01:50:10] 2025-11-21 00:50:10,491 [wrapper] cleanup supervisor_pilot 3355930 3355924
[2025-11-21 01:50:10] 2025-11-21 00:50:10,493 [wrapper] Test setup, not cleaning
[2025-11-21 01:50:10] 2025-11-21 00:50:10,496 [wrapper] apfmon messages muted
[2025-11-21 01:50:10] 2025-11-21 00:50:10,498 [wrapper] ==== wrapper stdout END ====
[2025-11-21 01:50:10] 2025-11-21 00:50:10,501 [wrapper] ==== wrapper stderr END ====
[2025-11-21 01:50:10]  *** Error codes and diagnostics ***
[2025-11-21 01:50:10]     "exeErrorCode": 65,
[2025-11-21 01:50:10]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 01:50:10]     "pilotErrorCode": 1305,
[2025-11-21 01:50:10]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 01:50:10]  *** Listing of results directory ***
[2025-11-21 01:50:10] total 404444
[2025-11-21 01:50:10] -rw-r--r-- 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-21 01:50:10] -rwx------ 1 boinc boinc     36292 Nov 18 16:26 runpilot2-wrapper.sh
[2025-11-21 01:50:10] -rw-r--r-- 1 boinc boinc      5112 Nov 18 16:27 queuedata.json
[2025-11-21 01:50:10] -rw-r--r-- 1 boinc boinc       100 Nov 21 01:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 01:50:10] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 01:45 run_atlas
[2025-11-21 01:50:10] -rw-r--r-- 1 boinc boinc       105 Nov 21 01:45 job.xml
[2025-11-21 01:50:10] -rw-r--r-- 2 boinc boinc 409960985 Nov 21 01:45 EVNT.47493065._000083.pool.root.1
[2025-11-21 01:50:10] -rw-r--r-- 2 boinc boinc    590106 Nov 21 01:45 input.tar.gz
[2025-11-21 01:50:10] -rw-r--r-- 2 boinc boinc     15120 Nov 21 01:45 start_atlas.sh
[2025-11-21 01:50:10] drwxrwx--x 2 boinc boinc      4096 Nov 21 01:45 shared
[2025-11-21 01:50:10] -rw-r--r-- 1 boinc boinc         0 Nov 21 01:45 boinc_setup_complete
[2025-11-21 01:50:10] -rw-r--r-- 1 boinc boinc      6194 Nov 21 01:45 init_data.xml
[2025-11-21 01:50:10] -rw-r--r-- 1 boinc boinc         0 Nov 21 01:45 boinc_lockfile
[2025-11-21 01:50:10] -rw-r--r-- 1 boinc boinc      2771 Nov 21 01:45 pandaJob.out
[2025-11-21 01:50:10] -rw------- 1 boinc boinc    989817 Nov 21 01:46 agis_schedconf.cvmfs.json
[2025-11-21 01:50:10] -rw------- 1 boinc boinc   1526164 Nov 21 01:46 agis_ddmendpoints.agis.ALL.json
[2025-11-21 01:50:10] drwx------ 5 boinc boinc      4096 Nov 21 01:46 pilot3
[2025-11-21 01:50:10] -rw-r--r-- 1 boinc boinc       522 Nov 21 01:47 boinc_task_state.xml
[2025-11-21 01:50:10] -rw------- 1 boinc boinc       959 Nov 21 01:47 memory_monitor_summary.json
[2025-11-21 01:50:10] -rw------- 1 boinc boinc     54393 Nov 21 01:47 log.47493068._000824.job.log.tgz.1
[2025-11-21 01:50:10] -rw------- 1 boinc boinc        95 Nov 21 01:49 pilot_heartbeat.json
[2025-11-21 01:50:10] -rw------- 1 boinc boinc      8411 Nov 21 01:49 heartbeat.json
[2025-11-21 01:50:10] -rw-r--r-- 1 boinc boinc      8192 Nov 21 01:50 boinc_mmap_file
[2025-11-21 01:50:10] -rw-r--r-- 1 boinc boinc        22 Nov 21 01:50 wrapper_checkpoint.txt
[2025-11-21 01:50:10] -rw------- 1 boinc boinc      4752 Nov 21 01:50 pilotlog.txt
[2025-11-21 01:50:10] -rw------- 1 boinc boinc     93672 Nov 21 01:50 log.47493068._000824.job.log.1
[2025-11-21 01:50:10] -rw------- 1 boinc boinc       186 Nov 21 01:50 output.list
[2025-11-21 01:50:10] -rw-r--r-- 1 boinc boinc       620 Nov 21 01:50 runtime_log
[2025-11-21 01:50:10] -rw------- 1 boinc boinc    163840 Nov 21 01:50 result.tar.gz
[2025-11-21 01:50:10] -rw-r--r-- 1 boinc boinc      8624 Nov 21 01:50 runtime_log.err
[2025-11-21 01:50:10] -rw------- 1 boinc boinc       649 Nov 21 01:50 ZqvMDmSmcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIOFKDm3nkrQo.diag
[2025-11-21 01:50:10] -rw-r--r-- 1 boinc boinc      8016 Nov 21 01:50 stderr.txt
[2025-11-21 01:50:10] No HITS result produced
[2025-11-21 01:50:10]  *** Contents of shared directory: ***
[2025-11-21 01:50:10] total 401116
[2025-11-21 01:50:10] -rw-r--r-- 2 boinc boinc 409960985 Nov 21 01:45 ATLAS.root_0
[2025-11-21 01:50:10] -rw-r--r-- 2 boinc boinc    590106 Nov 21 01:45 input.tar.gz
[2025-11-21 01:50:10] -rw-r--r-- 2 boinc boinc     15120 Nov 21 01:45 start_atlas.sh
[2025-11-21 01:50:10] -rw------- 1 boinc boinc    163840 Nov 21 01:50 result.tar.gz
01:50:11 (3352195): run_atlas exited; CPU time 32.017540
01:50:11 (3352195): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN