Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:14:24 (226897): wrapper (7.7.26015): starting
17:14:24 (226897): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 17:14:24] Arguments: --nthreads 12
[2025-11-20 17:14:24] Threads: 12
[2025-11-20 17:14:24] Checking for CVMFS
[2025-11-20 17:14:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 17:14:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 17:14:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 17:14:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 17:14:24] 2.11.5.0 143847 20182 369476 153102 2 959 24652891 45568000 17793 130560 0 174690957 99.766 124683590 25907 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-11-20 17:14:24] CVMFS is ok
[2025-11-20 17:14:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 17:14:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 17:14:24] Further information can be found at the LHC@home message board.
[2025-11-20 17:14:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 17:14:24] Checking for apptainer binary...
[2025-11-20 17:14:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 17:14:24] Running /usr/bin/apptainer --version
[2025-11-20 17:14:24] apptainer version 1.4.1-1.el9
[2025-11-20 17:14:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 17:14:25] wns0057.triumf.lcg
[2025-11-20 17:14:25] apptainer works
[2025-11-20 17:14:25] Set ATHENA_PROC_NUMBER=12
[2025-11-20 17:14:25] Set ATHENA_CORE_NUMBER=12
[2025-11-20 17:14:25] Starting ATLAS job with PandaID=6893879622
[2025-11-20 17:14:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 17:21:17]  *** The last 200 lines of the pilot log: ***
[2025-11-20 17:21:17] 2025-11-21 01:20:44,108 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 17:21:17] 2025-11-21 01:20:44,108 | WARNING  | wrong length of table data, x=[1763687752.0, 1763687813.0, 1763687874.0], y=[856.0, 618373.0, 514825.0] (must be same and length>=4)
[2025-11-20 17:21:17] 2025-11-21 01:20:44,109 | INFO     | could have reported an average CPU frequency of 2574 MHz (4 samples)
[2025-11-20 17:21:17] 2025-11-21 01:20:44,109 | INFO     | ..............................
[2025-11-20 17:21:17] 2025-11-21 01:20:44,109 | INFO     | . Timing measurements:
[2025-11-20 17:21:17] 2025-11-21 01:20:44,109 | INFO     | . get job = 0 s
[2025-11-20 17:21:17] 2025-11-21 01:20:44,109 | INFO     | . initial setup = 3 s
[2025-11-20 17:21:17] 2025-11-21 01:20:44,110 | INFO     | . payload setup = 16 s
[2025-11-20 17:21:17] 2025-11-21 01:20:44,110 | INFO     | . stage-in = 0 s
[2025-11-20 17:21:17] 2025-11-21 01:20:44,110 | INFO     | . payload execution = 171 s
[2025-11-20 17:21:17] 2025-11-21 01:20:44,110 | INFO     | . stage-out = 0 s
[2025-11-20 17:21:17] 2025-11-21 01:20:44,110 | INFO     | . log creation = 0 s
[2025-11-20 17:21:17] 2025-11-21 01:20:44,110 | INFO     | ..............................
[2025-11-20 17:21:17] 2025-11-21 01:20:44,110 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 17:21:17] 2025-11-21 01:20:44,110 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893879622/pilotlog.txt
[2025-11-20 17:21:17] 2025-11-21 01:20:44,142 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-20 17:21:17] - Log from pilotlog.txt -
[2025-11-20 17:21:17] 2025-11-21 01:20:44,095 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893879622/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 17:21:17] 2025-11-21 01:20:44,096 | INFO     | extracted standard info from prmon json
[2025-11-20 17:21:17] 2025-11-21 01:20:44,096 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 17:21:17] 2025-11-21 01:20:44,096 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 17:21:17] 2025-11-21 01:20:44,108 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 17:21:17] 2025-11-21 01:20:44,108 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 17:21:17] 2025-11-21 01:20:44,108 | WARNING  | wrong length of table data, x=[1763687752.0, 1763687813.0, 1763687874.0], y=[856.0, 618373.0, 514825.0] (must be same and length>=4)
[2025-11-20 17:21:17] 2025-11-21 01:20:44,109 | INFO     | could have reported an average CPU frequency of 2574 MHz (4 samples)
[2025-11-20 17:21:17] 2025-11-21 01:20:44,109 | INFO     | ..............................
[2025-11-20 17:21:17] 2025-11-21 01:20:44,109 | INFO     | . Timing measurements:
[2025-11-20 17:21:17] 2025-11-21 01:20:44,109 | INFO     | . get job = 0 s
[2025-11-20 17:21:17] 2025-11-21 01:20:44,109 | INFO     | . initial setup = 3 s
[2025-11-20 17:21:17] 2025-11-21 01:20:44,110 | INFO     | . payload setup = 16 s
[2025-11-20 17:21:17] 2025-11-21 01:20:44,110 | INFO     | . stage-in = 0 s
[2025-11-20 17:21:17] 2025-11-21 01:20:44,110 | INFO     | . payload execution = 171 s
[2025-11-20 17:21:17] 2025-11-21 01:20:44,110 | INFO     | . stage-out = 0 s
[2025-11-20 17:21:17] 2025-11-21 01:20:44,110 | INFO     | . log creation = 0 s
[2025-11-20 17:21:17] 2025-11-21 01:20:44,110 | INFO     | ..............................
[2025-11-20 17:21:17] 2025-11-21 01:20:44,110 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 17:21:17] 2025-11-21 01:20:44,110 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893879622/pilotlog.txt
[2025-11-20 17:21:17] 2025-11-21 01:20:44,143 | WARNING  | 
[2025-11-20 17:21:17] [begin log extracts]
[2025-11-20 17:21:17] - Log from pilotlog.txt -
[2025-11-20 17:21:17] 2025-11-21 01:20:44,095 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893879622/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 17:21:17] 2025-11-21 01:20:44,096 | INFO     | extracted standard info from prmon json
[2025-11-20 17:21:17] 2025-11-21 01:20:44,096 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 17:21:17] 2025-11-21 01:20:44,096 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 17:21:17] 2025-11-21 01:20:44,108 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 17:21:17] 2025-11-21 01:20:44,108 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 17:21:17] 2025-11-21 01:20:44,108 | WARNING  | wrong length of table data, x=[1763687752.0, 1763687813.0, 1763687874.0], y=[856.0, 618373.0, 514825.0] (must be same and length>=4)
[2025-11-20 17:21:17] 2025-11-21 01:20:44,109 | INFO     | could have reported an average CPU frequency of 2574 MHz (4 samples)
[2025-11-20 17:21:17] 2025-11-21 01:20:44,109 | INFO     | ..............................
[2025-11-20 17:21:17] 2025-11-21 01:20:44,109 | INFO     | . Timing measurements:
[2025-11-20 17:21:17] 2025-11-21 01:20:44,109 | INFO     | . get job = 0 s
[2025-11-20 17:21:17] 2025-11-21 01:20:44,109 | INFO     | . initial setup = 3 s
[2025-11-20 17:21:17] 2025-11-21 01:20:44,110 | INFO     | . payload setup = 16 s
[2025-11-20 17:21:17] 2025-11-21 01:20:44,110 | INFO     | . stage-in = 0 s
[2025-11-20 17:21:17] 2025-11-21 01:20:44,110 | INFO     | . payload execution = 171 s
[2025-11-20 17:21:17] 2025-11-21 01:20:44,110 | INFO     | . stage-out = 0 s
[2025-11-20 17:21:17] 2025-11-21 01:20:44,110 | INFO     | . log creation = 0 s
[2025-11-20 17:21:17] 2025-11-21 01:20:44,110 | INFO     | ..............................
[2025-11-20 17:21:17] 2025-11-21 01:20:44,110 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 17:21:17] 2025-11-21 01:20:44,110 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893879622/pilotlog.txt
[2025-11-20 17:21:17] [end log extracts]
[2025-11-20 17:21:17] 2025-11-21 01:20:44,143 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-20 17:21:17] 2025-11-21 01:20:44,143 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-20 17:21:17] 2025-11-21 01:20:44,198 | INFO     | 
[2025-11-20 17:21:17] 2025-11-21 01:20:44,199 | INFO     | job summary report
[2025-11-20 17:21:17] 2025-11-21 01:20:44,199 | INFO     | --------------------------------------------------
[2025-11-20 17:21:17] 2025-11-21 01:20:44,199 | INFO     | PanDA job id: 6893879622
[2025-11-20 17:21:17] 2025-11-21 01:20:44,199 | INFO     | task id: 47523449
[2025-11-20 17:21:17] 2025-11-21 01:20:44,199 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-20 17:18:23,196 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-20 17:21:17] 2025-11-21 01:20:44,199 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-20 17:21:17] 2025-11-21 01:20:44,199 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 17:21:17] 2025-11-21 01:20:44,199 | INFO     | pilot state: failed 
[2025-11-20 17:21:17] 2025-11-21 01:20:44,199 | INFO     | transexitcode: 65
[2025-11-20 17:21:17] 2025-11-21 01:20:44,199 | INFO     | exeerrorcode: 65
[2025-11-20 17:21:17] 2025-11-21 01:20:44,199 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-20 17:21:17] 2025-11-21 01:20:44,199 | INFO     | exitcode: 65
[2025-11-20 17:21:17] 2025-11-21 01:20:44,199 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-20 17:21:17] 2025-11-21 01:20:44,199 | INFO     | cpuconsumptiontime: 44 s
[2025-11-20 17:21:17] 2025-11-21 01:20:44,199 | INFO     | nevents: 0
[2025-11-20 17:21:17] 2025-11-21 01:20:44,199 | INFO     | neventsw: 0
[2025-11-20 17:21:17] 2025-11-21 01:20:44,199 | INFO     | pid: 245294
[2025-11-20 17:21:17] 2025-11-21 01:20:44,199 | INFO     | pgrp: 245294
[2025-11-20 17:21:17] 2025-11-21 01:20:44,199 | INFO     | corecount: 12
[2025-11-20 17:21:17] 2025-11-21 01:20:44,200 | INFO     | event service: False
[2025-11-20 17:21:17] 2025-11-21 01:20:44,200 | INFO     | sizes: {0: 2298753, 1: 2298753, 9: 2299043, 11: 2299071, 191: 2328785, 194: 2328785, 324: 2329079}
[2025-11-20 17:21:17] 2025-11-21 01:20:44,200 | INFO     | --------------------------------------------------
[2025-11-20 17:21:17] 2025-11-21 01:20:44,200 | INFO     | 
[2025-11-20 17:21:17] 2025-11-21 01:20:44,200 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-20 17:21:17] 2025-11-21 01:20:44,217 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 17:21:17] 2025-11-21 01:20:44,217 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 17:21:17] 2025-11-21 01:20:44,217 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 17:21:17] 2025-11-21 01:20:44,217 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 17:21:17] 2025-11-21 01:20:44,217 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 17:21:17] 2025-11-21 01:20:44,217 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 17:21:17] 2025-11-21 01:20:44,217 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 17:21:17] 2025-11-21 01:20:44,217 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 17:21:17] 2025-11-21 01:20:44,217 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 17:21:17] 2025-11-21 01:20:44,217 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 17:21:17] 2025-11-21 01:20:44,217 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 17:21:17] 2025-11-21 01:20:44,218 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 17:21:17] 2025-11-21 01:20:44,218 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 17:21:17] 2025-11-21 01:20:44,218 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 17:21:17] 2025-11-21 01:20:44,218 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 17:21:17] 2025-11-21 01:20:44,218 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 17:21:17] 2025-11-21 01:20:44,218 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 17:21:17] 2025-11-21 01:20:44,218 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 17:21:17] 2025-11-21 01:20:44,218 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 17:21:17] 2025-11-21 01:20:44,218 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 17:21:17] 2025-11-21 01:20:44,218 | INFO     | job 6893879622 has completed (purged errors)
[2025-11-20 17:21:17] 2025-11-21 01:20:44,218 | INFO     | overall cleanup function is called
[2025-11-20 17:21:17] 2025-11-21 01:20:45,232 | INFO     | --- collectZombieJob: --- 10, [245294]
[2025-11-20 17:21:17] 2025-11-21 01:20:45,233 | INFO     | zombie collector waiting for pid 245294
[2025-11-20 17:21:17] 2025-11-21 01:20:45,233 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 17:21:17] 2025-11-21 01:20:45,233 | INFO     | collected zombie processes
[2025-11-20 17:21:17] 2025-11-21 01:20:45,233 | INFO     | will attempt to kill all subprocesses of pid=245294
[2025-11-20 17:21:17] 2025-11-21 01:20:45,522 | INFO     | process IDs to be killed: [245294] (in reverse order)
[2025-11-20 17:21:17] 2025-11-21 01:20:45,729 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 17:21:17] 2025-11-21 01:20:45,729 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 17:21:17] 2025-11-21 01:20:45,766 | INFO     | did not find any defunct processes belonging to 245294
[2025-11-20 17:21:17] 2025-11-21 01:20:45,793 | INFO     | did not find any defunct processes belonging to 245294
[2025-11-20 17:21:17] 2025-11-21 01:20:45,794 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 17:21:17] 2025-11-21 01:20:45,794 | INFO     | ready for new job
[2025-11-20 17:21:17] 2025-11-21 01:20:45,794 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 17:21:17] 2025-11-21 01:20:45,801 | INFO     | ***************************************
[2025-11-20 17:21:17] 2025-11-21 01:20:45,802 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 17:21:17] 2025-11-21 01:20:45,802 | INFO     | ***************************************
[2025-11-20 17:21:17] 2025-11-21 01:20:45,802 | INFO     | 
[2025-11-20 17:21:17] 2025-11-21 01:20:45,804 | INFO     | architecture information:
[2025-11-20 17:21:17] 2025-11-21 01:20:45,824 | INFO     | executing command: cat /etc/os-release
[2025-11-20 17:21:17] 2025-11-21 01:20:45,927 | INFO     | cat /etc/os-release:
[2025-11-20 17:21:17] NAME="CentOS Linux"
[2025-11-20 17:21:17] VERSION="7 (Core)"
[2025-11-20 17:21:17] ID="centos"
[2025-11-20 17:21:17] ID_LIKE="rhel fedora"
[2025-11-20 17:21:17] VERSION_ID="7"
[2025-11-20 17:21:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 17:21:17] ANSI_COLOR="0;31"
[2025-11-20 17:21:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 17:21:17] HOME_URL="https://www.centos.org/"
[2025-11-20 17:21:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 17:21:17] 
[2025-11-20 17:21:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 17:21:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 17:21:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 17:21:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 17:21:17] 
[2025-11-20 17:21:17] 2025-11-21 01:20:45,928 | INFO     | ***************************************
[2025-11-20 17:21:17] 2025-11-21 01:20:46,432 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-20 17:21:17] 2025-11-21 01:20:46,476 | INFO     | sufficient remaining disk space (1922689925120 B)
[2025-11-20 17:21:17] 2025-11-21 01:20:46,476 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 17:21:17] 2025-11-21 01:20:46,476 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 17:21:17] 2025-11-21 01:20:46,476 | INFO     | update_server=False
[2025-11-20 17:21:17] 2025-11-21 01:20:46,477 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 17:21:17] 2025-11-21 01:20:46,489 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 17:21:17] 2025-11-21 01:20:46,495 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 17:21:17] 2025-11-21 01:20:46,496 | INFO     | aborting loop
[2025-11-20 17:21:17] 2025-11-21 01:20:46,617 | INFO     | all job control threads have been joined
[2025-11-20 17:21:17] 2025-11-21 01:20:46,624 | INFO     | all data control threads have been joined
[2025-11-20 17:21:17] 2025-11-21 01:20:46,646 | INFO     | all payload control threads have been joined
[2025-11-20 17:21:17] 2025-11-21 01:20:47,184 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 17:21:17] 2025-11-21 01:20:47,484 | INFO     | [job] retrieve thread has finished
[2025-11-20 17:21:17] 2025-11-21 01:20:47,503 | INFO     | [job] job monitor thread has finished
[2025-11-20 17:21:17] 2025-11-21 01:20:47,505 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 17:21:17] 2025-11-21 01:20:47,624 | INFO     | [job] control thread has finished
[2025-11-20 17:21:17] 2025-11-21 01:20:47,631 | INFO     | [data] control thread has finished
[2025-11-20 17:21:17] 2025-11-21 01:20:47,652 | INFO     | [payload] control thread has finished
[2025-11-20 17:21:17] 2025-11-21 01:20:47,825 | INFO     | [job] validate thread has finished
[2025-11-20 17:21:17] 2025-11-21 01:20:48,123 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 17:21:17] 2025-11-21 01:20:48,555 | INFO     | [payload] validate_post thread has finished
[2025-11-20 17:21:17] 2025-11-21 01:20:48,605 | INFO     | [payload] failed_post thread has finished
[2025-11-20 17:21:17] 2025-11-21 01:20:48,667 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 17:21:17] 2025-11-21 01:20:48,714 | INFO     | [data] copytool_in thread has finished
[2025-11-20 17:21:17] 2025-11-21 01:20:48,802 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 17:21:17] 2025-11-21 01:20:49,191 | INFO     | [data] copytool_out thread has finished
[2025-11-20 17:21:17] 2025-11-21 01:20:49,214 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 17:21:17] 2025-11-21 01:20:50,220 | INFO     | [job] queue monitor thread has finished
[2025-11-20 17:21:17] 2025-11-21 01:20:50,514 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 17:21:17] 2025-11-21 01:20:50,889 | INFO     | [monitor] cgroup control has ended
[2025-11-20 17:21:17] 2025-11-21 01:20:52,540 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139861002909504)>', '<ExcThread(monitor, started 139860216104704)>']
[2025-11-20 17:21:17] 2025-11-21 01:20:57,566 | INFO     | all workflow threads have been joined
[2025-11-20 17:21:17] 2025-11-21 01:20:57,567 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 17:21:17] 2025-11-21 01:20:57,567 | INFO     | traces error code: 0
[2025-11-20 17:21:17] 2025-11-21 01:20:57,567 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 17:21:17] 2025-11-21 01:21:16,922 | INFO     | PID=233027 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-20 17:21:17] 2025-11-21 01:21:16,922 | INFO     | .. there are 27 such processes running
[2025-11-20 17:21:17] 2025-11-21 01:21:16,922 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 17:21:17] 2025-11-21 01:21:16,922 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 17:21:17] 2025-11-21 01:21:16,923 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 17:21:17] 2025-11-21 01:21:16,923 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 17:21:17] 2025-11-21 01:21:16,923 | INFO     | [monitor] control thread has ended
[2025-11-20 17:21:17] 2025-11-21 01:21:17,045 [wrapper] ==== pilot stdout END ====
[2025-11-20 17:21:17] 2025-11-21 01:21:17,048 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 17:21:17] 2025-11-21 01:21:17,049 [wrapper] pilotpid: 233027
[2025-11-20 17:21:17] 2025-11-21 01:21:17,054 [wrapper] Pilot exit status: 0
[2025-11-20 17:21:17] 2025-11-21 01:21:17,133 [wrapper] pandaids: 6893879622
[2025-11-20 17:21:17] 2025-11-21 01:21:17,240 [wrapper] cleanup supervisor_pilot  233040 233028
[2025-11-20 17:21:17] 2025-11-21 01:21:17,242 [wrapper] Test setup, not cleaning
[2025-11-20 17:21:17] 2025-11-21 01:21:17,244 [wrapper] apfmon messages muted
[2025-11-20 17:21:17] 2025-11-21 01:21:17,246 [wrapper] ==== wrapper stdout END ====
[2025-11-20 17:21:17] 2025-11-21 01:21:17,248 [wrapper] ==== wrapper stderr END ====
[2025-11-20 17:21:17]  *** Error codes and diagnostics ***
[2025-11-20 17:21:17]     "exeErrorCode": 65,
[2025-11-20 17:21:17]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-20 17:21:17]     "pilotErrorCode": 1305,
[2025-11-20 17:21:17]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-20 17:21:17]  *** Listing of results directory ***
[2025-11-20 17:21:17] total 404512
[2025-11-20 17:21:17] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:10 pilot3.tar.gz
[2025-11-20 17:21:17] -rwx------. 1 boinc boinc     36292 Nov 20 11:18 runpilot2-wrapper.sh
[2025-11-20 17:21:17] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:18 queuedata.json
[2025-11-20 17:21:17] -rw-r--r--. 1 boinc boinc       100 Nov 20 17:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 17:21:17] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 17:14 run_atlas
[2025-11-20 17:21:17] -rw-r--r--. 1 boinc boinc       105 Nov 20 17:14 job.xml
[2025-11-20 17:21:17] -rw-r--r--. 2 boinc boinc 409981134 Nov 20 17:14 EVNT.47493127._000822.pool.root.1
[2025-11-20 17:21:17] -rw-r--r--. 1 boinc boinc      6594 Nov 20 17:14 init_data.xml
[2025-11-20 17:21:17] -rw-r--r--. 2 boinc boinc     15847 Nov 20 17:14 start_atlas.sh
[2025-11-20 17:21:17] drwxrwx--x. 2 boinc boinc      4096 Nov 20 17:14 shared
[2025-11-20 17:21:17] -rw-r--r--. 2 boinc boinc    590098 Nov 20 17:14 input.tar.gz
[2025-11-20 17:21:17] -rw-r--r--. 1 boinc boinc         0 Nov 20 17:14 boinc_lockfile
[2025-11-20 17:21:17] -rw-r--r--. 1 boinc boinc      2785 Nov 20 17:14 pandaJob.out
[2025-11-20 17:21:17] -rw-------. 1 boinc boinc    989817 Nov 20 17:14 agis_schedconf.cvmfs.json
[2025-11-20 17:21:17] -rw-------. 1 boinc boinc   1526164 Nov 20 17:14 agis_ddmendpoints.agis.ALL.json
[2025-11-20 17:21:17] drwx------. 5 boinc boinc      4096 Nov 20 17:14 pilot3
[2025-11-20 17:21:17] -rw-r--r--. 1 boinc boinc       524 Nov 20 17:18 boinc_task_state.xml
[2025-11-20 17:21:17] -rw-------. 1 boinc boinc      1019 Nov 20 17:18 memory_monitor_summary.json
[2025-11-20 17:21:17] -rw-------. 1 boinc boinc     49899 Nov 20 17:18 log.47523449._008214.job.log.tgz.1
[2025-11-20 17:21:17] -rw-------. 1 boinc boinc     10342 Nov 20 17:20 heartbeat.json
[2025-11-20 17:21:17] -rw-r--r--. 1 boinc boinc      8192 Nov 20 17:21 boinc_mmap_file
[2025-11-20 17:21:17] -rw-r--r--. 1 boinc boinc        23 Nov 20 17:21 wrapper_checkpoint.txt
[2025-11-20 17:21:17] -rw-------. 1 boinc boinc        95 Nov 20 17:21 pilot_heartbeat.json
[2025-11-20 17:21:17] -rw-------. 1 boinc boinc       822 Nov 20 17:21 pilotlog.txt
[2025-11-20 17:21:17] -rw-------. 1 boinc boinc    110403 Nov 20 17:21 log.47523449._008214.job.log.1
[2025-11-20 17:21:17] -rw-------. 1 boinc boinc       186 Nov 20 17:21 output.list
[2025-11-20 17:21:17] -rw-r--r--. 1 boinc boinc       620 Nov 20 17:21 runtime_log
[2025-11-20 17:21:17] -rw-------. 1 boinc boinc    184320 Nov 20 17:21 result.tar.gz
[2025-11-20 17:21:17] -rw-r--r--. 1 boinc boinc      8636 Nov 20 17:21 runtime_log.err
[2025-11-20 17:21:17] -rw-------. 1 boinc boinc       645 Nov 20 17:21 IDkMDm6LPg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmuzGKDm91XwGm.diag
[2025-11-20 17:21:17] -rw-r--r--. 1 boinc boinc     22529 Nov 20 17:21 stderr.txt
[2025-11-20 17:21:17] No HITS result produced
[2025-11-20 17:21:17]  *** Contents of shared directory: ***
[2025-11-20 17:21:17] total 401156
[2025-11-20 17:21:17] -rw-r--r--. 2 boinc boinc 409981134 Nov 20 17:14 ATLAS.root_0
[2025-11-20 17:21:17] -rw-r--r--. 2 boinc boinc     15847 Nov 20 17:14 start_atlas.sh
[2025-11-20 17:21:17] -rw-r--r--. 2 boinc boinc    590098 Nov 20 17:14 input.tar.gz
[2025-11-20 17:21:17] -rw-------. 1 boinc boinc    184320 Nov 20 17:21 result.tar.gz
17:21:18 (226897): run_atlas exited; CPU time 47.581385
17:21:18 (226897): called boinc_finish(0)

</stderr_txt>
]]>

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