Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:03:49 (2145670): wrapper (7.7.26015): starting
02:03:49 (2145670): wrapper: running run_atlas (--nthreads 4)
[2025-11-27 02:03:49] Arguments: --nthreads 4
[2025-11-27 02:03:49] Threads: 4
[2025-11-27 02:03:49] Checking for CVMFS
[2025-11-27 02:03:49] No cvmfs_config command found, will try listing directly
[2025-11-27 02:03:49] CVMFS is ok
[2025-11-27 02:03:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 02:03:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 02:03:49] Further information can be found at the LHC@home message board.
[2025-11-27 02:03:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 02:03:49] Checking for apptainer binary...
[2025-11-27 02:03:49] which: no apptainer in ((null))
[2025-11-27 02:03:49] apptainer is not installed, using version from CVMFS
[2025-11-27 02:03:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 02:03:50] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot128/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2025-11-27 02:03:50] apptainer works
[2025-11-27 02:03:50] Set ATHENA_PROC_NUMBER=4
[2025-11-27 02:03:50] Set ATHENA_CORE_NUMBER=4
[2025-11-27 02:03:50] Starting ATLAS job with PandaID=6893879634
[2025-11-27 02:03:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot128/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 17:18:52]  *** The last 200 lines of the pilot log: ***
[2025-11-27 17:18:52] 2025-11-27 16:13:42,718 | INFO     | time since job start (54577s) is within the limit (172800.0s)
[2025-11-27 17:18:52] 2025-11-27 16:13:43,478 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 17:18:52] 2025-11-27 16:13:43,500 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2727.565890625001
[2025-11-27 17:18:52] 2025-11-27 16:13:43,523 | INFO     | using path: /scratch/boinc/var/slot128/slots/0/PanDA_Pilot-6893879634/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 17:18:52] 2025-11-27 16:13:43,524 | INFO     | extracted standard info from prmon json
[2025-11-27 17:18:52] 2025-11-27 16:13:43,524 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 17:18:52] 2025-11-27 16:13:43,524 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 17:18:52] 2025-11-27 16:13:43,537 | INFO     | fitting pss+swap vs Time
[2025-11-27 17:18:52] 2025-11-27 16:13:43,538 | INFO     | sum of square deviations: 221559530907.5
[2025-11-27 17:18:52] 2025-11-27 16:13:43,555 | INFO     | sum of deviations: 649001739336.0
[2025-11-27 17:18:52] 2025-11-27 16:13:43,555 | INFO     | mean x: 1764232717.5
[2025-11-27 17:18:52] 2025-11-27 16:13:43,555 | INFO     | mean y: 2276914.7091722596
[2025-11-27 17:18:52] 2025-11-27 16:13:43,555 | INFO     | intersect: -5165589696.856302
[2025-11-27 17:18:52] 2025-11-27 16:13:43,556 | INFO     | chi2: 3.9606768086357396
[2025-11-27 17:18:52] 2025-11-27 16:13:43,557 | INFO     | sum of square deviations: 217862838340.0
[2025-11-27 17:18:52] 2025-11-27 16:13:43,575 | INFO     | sum of deviations: 813538551709.001
[2025-11-27 17:18:52] 2025-11-27 16:13:43,575 | INFO     | mean x: 1764232565.0
[2025-11-27 17:18:52] 2025-11-27 16:13:43,575 | INFO     | mean y: 2283696.4836895387
[2025-11-27 17:18:52] 2025-11-27 16:13:43,575 | INFO     | intersect: -6585674198.235602
[2025-11-27 17:18:52] 2025-11-27 16:13:43,576 | INFO     | chi2: 2.1980595570614914
[2025-11-27 17:18:52] 2025-11-27 16:13:43,576 | INFO     | current chi2=2.1980595570614914 (change=44.502930603453706 %)
[2025-11-27 17:18:52] 2025-11-27 16:13:43,577 | INFO     | sum of square deviations: 214207495385.0
[2025-11-27 17:18:52] 2025-11-27 16:13:43,594 | INFO     | sum of deviations: 849867985842.9999
[2025-11-27 17:18:52] 2025-11-27 16:13:43,594 | INFO     | mean x: 1764232412.5
[2025-11-27 17:18:52] 2025-11-27 16:13:43,594 | INFO     | mean y: 2285208.0791855203
[2025-11-27 17:18:52] 2025-11-27 16:13:43,594 | INFO     | intersect: -6997304812.220848
[2025-11-27 17:18:52] 2025-11-27 16:13:43,595 | INFO     | chi2: 2.0334747239336104
[2025-11-27 17:18:52] 2025-11-27 16:13:43,595 | INFO     | current chi2=2.0334747239336104 (change=7.487733105280762 %)
[2025-11-27 17:18:52] 2025-11-27 16:13:43,595 | INFO     | right removable region: 883
[2025-11-27 17:18:52] 2025-11-27 16:13:43,597 | INFO     | sum of square deviations: 217862838340.0
[2025-11-27 17:18:52] 2025-11-27 16:13:43,615 | INFO     | sum of deviations: 483911515808.9999
[2025-11-27 17:18:52] 2025-11-27 16:13:43,615 | INFO     | mean x: 1764232870.0
[2025-11-27 17:18:52] 2025-11-27 16:13:43,615 | INFO     | mean y: 2283711.977502812
[2025-11-27 17:18:52] 2025-11-27 16:13:43,615 | INFO     | intersect: -3916386442.449726
[2025-11-27 17:18:52] 2025-11-27 16:13:43,616 | INFO     | chi2: 2.041179736977358
[2025-11-27 17:18:52] 2025-11-27 16:13:43,616 | INFO     | current chi2=2.041179736977358 (change=48.463865253361966 %)
[2025-11-27 17:18:52] 2025-11-27 16:13:43,617 | INFO     | sum of square deviations: 214207495385.0
[2025-11-27 17:18:52] 2025-11-27 16:13:43,634 | INFO     | sum of deviations: 470578543533.0
[2025-11-27 17:18:52] 2025-11-27 16:13:43,635 | INFO     | mean x: 1764233022.5
[2025-11-27 17:18:52] 2025-11-27 16:13:43,635 | INFO     | mean y: 2284267.520361991
[2025-11-27 17:18:52] 2025-11-27 16:13:43,635 | INFO     | intersect: -3873444752.552987
[2025-11-27 17:18:52] 2025-11-27 16:13:43,636 | INFO     | chi2: 2.0388081050881657
[2025-11-27 17:18:52] 2025-11-27 16:13:43,636 | INFO     | current chi2=2.0388081050881657 (change=0.1161892726166384 %)
[2025-11-27 17:18:52] 2025-11-27 16:13:43,636 | INFO     | left removable region: 20
[2025-11-27 17:18:52] 2025-11-27 16:13:43,637 | INFO     | sum of square deviations: 199301344272.0
[2025-11-27 17:18:52] 2025-11-27 16:13:43,655 | INFO     | sum of deviations: 616852226319.0001
[2025-11-27 17:18:52] 2025-11-27 16:13:43,655 | INFO     | monitor loop #3670: job 0:6893879634 is in state 'finished'
[2025-11-27 17:18:52] 2025-11-27 16:13:43,655 | INFO     | mean x: 1764232992.0
[2025-11-27 17:18:52] 2025-11-27 16:13:43,656 | INFO     | mean y: 2294932.369640788
[2025-11-27 17:18:52] 2025-11-27 16:13:43,656 | INFO     | intersect: -5458135115.585248
[2025-11-27 17:18:52] 2025-11-27 16:13:43,657 | INFO     | chi2: 0.07541764987469858
[2025-11-27 17:18:52] 2025-11-27 16:13:43,656 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:18:52] 2025-11-27 16:13:43,657 | INFO     | current memory leak: 3.10 B/s (using 863 data points, chi2=0.08)
[2025-11-27 17:18:52] 2025-11-27 16:13:43,659 | INFO     | could have reported an average CPU frequency of 2703 MHz (34 samples)
[2025-11-27 17:18:52] 2025-11-27 16:13:43,659 | INFO     | ..............................
[2025-11-27 17:18:52] 2025-11-27 16:13:43,659 | INFO     | . Timing measurements:
[2025-11-27 17:18:52] 2025-11-27 16:13:43,659 | INFO     | . get job = 0 s
[2025-11-27 17:18:52] 2025-11-27 16:13:43,659 | INFO     | . initial setup = 1 s
[2025-11-27 17:18:52] 2025-11-27 16:13:43,659 | INFO     | . payload setup = 10 s
[2025-11-27 17:18:52] 2025-11-27 16:13:43,659 | INFO     | . stage-in = 0 s
[2025-11-27 17:18:52] 2025-11-27 16:13:43,659 | INFO     | . payload execution = 54535 s
[2025-11-27 17:18:52] 2025-11-27 16:13:43,659 | INFO     | . stage-out = 2 s
[2025-11-27 17:18:52] 2025-11-27 16:13:43,659 | INFO     | . log creation = 0 s
[2025-11-27 17:18:52] 2025-11-27 16:13:43,660 | INFO     | ..............................
[2025-11-27 17:18:52] 2025-11-27 16:13:43,750 | INFO     | 
[2025-11-27 17:18:52] 2025-11-27 16:13:43,751 | INFO     | job summary report
[2025-11-27 17:18:52] 2025-11-27 16:13:43,751 | INFO     | --------------------------------------------------
[2025-11-27 17:18:52] 2025-11-27 16:13:43,751 | INFO     | PanDA job id: 6893879634
[2025-11-27 17:18:52] 2025-11-27 16:13:43,751 | INFO     | task id: 47523449
[2025-11-27 17:18:52] 2025-11-27 16:13:43,751 | INFO     | errors: (none)
[2025-11-27 17:18:52] 2025-11-27 16:13:43,751 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 17:18:52] 2025-11-27 16:13:43,752 | INFO     | pilot state: finished 
[2025-11-27 17:18:52] 2025-11-27 16:13:43,752 | INFO     | transexitcode: 0
[2025-11-27 17:18:52] 2025-11-27 16:13:43,752 | INFO     | exeerrorcode: 0
[2025-11-27 17:18:52] 2025-11-27 16:13:43,752 | INFO     | exeerrordiag: 
[2025-11-27 17:18:52] 2025-11-27 16:13:43,752 | INFO     | exitcode: 0
[2025-11-27 17:18:52] 2025-11-27 16:13:43,752 | INFO     | exitmsg: OK
[2025-11-27 17:18:52] 2025-11-27 16:13:43,752 | INFO     | cpuconsumptiontime: 218915 s
[2025-11-27 17:18:52] 2025-11-27 16:13:43,752 | INFO     | nevents: 1000
[2025-11-27 17:18:52] 2025-11-27 16:13:43,752 | INFO     | neventsw: 0
[2025-11-27 17:18:52] 2025-11-27 16:13:43,752 | INFO     | pid: 2157176
[2025-11-27 17:18:52] 2025-11-27 16:13:43,753 | INFO     | pgrp: 2157176
[2025-11-27 17:18:52] 2025-11-27 16:13:43,753 | INFO     | corecount: 4
[2025-11-27 17:18:52] 2025-11-27 16:13:43,753 | INFO     | event service: False
[2025-11-27 17:18:52] 2025-11-27 16:13:43,753 | INFO     | sizes: {0: 2284276, 7: 2284538, 11: 2284566, 54549: 2336938, 54551: 2345956, 54553: 2346012, 54560: 2346386}
[2025-11-27 17:18:52] 2025-11-27 16:13:43,753 | INFO     | --------------------------------------------------
[2025-11-27 17:18:52] 2025-11-27 16:13:43,753 | INFO     | 
[2025-11-27 17:18:52] 2025-11-27 16:13:43,753 | INFO     | executing command: ls -lF /scratch/boinc/var/slot128/slots/0
[2025-11-27 17:18:52] 2025-11-27 16:13:43,780 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 17:18:52] 2025-11-27 16:13:43,780 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 17:18:52] 2025-11-27 16:13:43,780 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 17:18:52] 2025-11-27 16:13:43,781 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 17:18:52] 2025-11-27 16:13:43,781 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 17:18:52] 2025-11-27 16:13:43,781 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 17:18:52] 2025-11-27 16:13:43,781 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 17:18:52] 2025-11-27 16:13:43,781 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 17:18:52] 2025-11-27 16:13:43,781 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 17:18:52] 2025-11-27 16:13:43,781 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 17:18:52] 2025-11-27 16:13:43,781 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 17:18:52] 2025-11-27 16:13:43,781 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 17:18:52] 2025-11-27 16:13:43,782 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 17:18:52] 2025-11-27 16:13:43,782 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 17:18:52] 2025-11-27 16:13:43,782 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 17:18:52] 2025-11-27 16:13:43,782 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 17:18:52] 2025-11-27 16:13:43,782 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 17:18:52] 2025-11-27 16:13:43,782 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 17:18:52] 2025-11-27 16:13:43,782 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 17:18:52] 2025-11-27 16:13:43,782 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 17:18:52] 2025-11-27 16:13:43,783 | INFO     | job 6893879634 has completed (purged errors)
[2025-11-27 17:18:52] 2025-11-27 16:13:43,783 | INFO     | overall cleanup function is called
[2025-11-27 17:18:52] 2025-11-27 16:13:44,800 | INFO     | --- collectZombieJob: --- 10, [2157176]
[2025-11-27 17:18:52] 2025-11-27 16:13:44,800 | INFO     | zombie collector waiting for pid 2157176
[2025-11-27 17:18:52] 2025-11-27 16:13:44,800 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 17:18:52] 2025-11-27 16:13:44,800 | INFO     | collected zombie processes
[2025-11-27 17:18:52] 2025-11-27 16:13:44,800 | INFO     | will attempt to kill all subprocesses of pid=2157176
[2025-11-27 17:18:52] 2025-11-27 16:13:45,653 | INFO     | process IDs to be killed: [2157176] (in reverse order)
[2025-11-27 17:18:52] 2025-11-27 16:13:45,910 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 17:18:52] 2025-11-27 16:13:45,911 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 17:18:52] 2025-11-27 16:13:45,945 | INFO     | did not find any defunct processes belonging to 2157176
[2025-11-27 17:18:52] 2025-11-27 16:13:45,973 | INFO     | did not find any defunct processes belonging to 2157176
[2025-11-27 17:18:52] 2025-11-27 16:13:45,975 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:18:52] 2025-11-27 16:13:45,975 | INFO     | ready for new job
[2025-11-27 17:18:52] 2025-11-27 16:13:45,975 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 17:18:52] 2025-11-27 16:13:45,981 | INFO     | ***************************************
[2025-11-27 17:18:52] 2025-11-27 16:13:45,981 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 17:18:52] 2025-11-27 16:13:45,981 | INFO     | ***************************************
[2025-11-27 17:18:52] 2025-11-27 16:13:45,982 | INFO     | 
[2025-11-27 17:18:52] 2025-11-27 16:13:45,990 | INFO     | architecture information:
[2025-11-27 17:18:52] 2025-11-27 16:13:45,990 | INFO     | executing command: cat /etc/os-release
[2025-11-27 17:18:52] 2025-11-27 16:13:46,011 | INFO     | cat /etc/os-release:
[2025-11-27 17:18:52] NAME="CentOS Linux"
[2025-11-27 17:18:52] VERSION="7 (Core)"
[2025-11-27 17:18:52] ID="centos"
[2025-11-27 17:18:52] ID_LIKE="rhel fedora"
[2025-11-27 17:18:52] VERSION_ID="7"
[2025-11-27 17:18:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 17:18:52] ANSI_COLOR="0;31"
[2025-11-27 17:18:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 17:18:52] HOME_URL="https://www.centos.org/"
[2025-11-27 17:18:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 17:18:52] 
[2025-11-27 17:18:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 17:18:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 17:18:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 17:18:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 17:18:52] 
[2025-11-27 17:18:52] 2025-11-27 16:13:46,012 | INFO     | ***************************************
[2025-11-27 17:18:52] 2025-11-27 16:13:46,515 | INFO     | executing command: df -mP /scratch/boinc/var/slot128/slots/0
[2025-11-27 17:18:52] 2025-11-27 16:13:46,535 | INFO     | sufficient remaining disk space (3296829898752 B)
[2025-11-27 17:18:52] 2025-11-27 16:13:46,535 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 17:18:52] 2025-11-27 16:13:46,536 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 17:18:52] 2025-11-27 16:13:46,536 | INFO     | update_server=False
[2025-11-27 17:18:52] 2025-11-27 16:13:46,536 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 17:18:52] 2025-11-27 16:13:46,693 | INFO     | all data control threads have been joined
[2025-11-27 17:18:52] 2025-11-27 16:13:47,059 | INFO     | all payload control threads have been joined
[2025-11-27 17:18:52] 2025-11-27 16:13:47,167 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:18:52] 2025-11-27 16:13:47,167 | INFO     | aborting loop
[2025-11-27 17:18:52] 2025-11-27 16:13:47,303 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 17:18:52] 2025-11-27 16:13:47,541 | INFO     | [job] retrieve thread has finished
[2025-11-27 17:18:52] 2025-11-27 16:13:47,653 | INFO     | [job] validate thread has finished
[2025-11-27 17:18:52] 2025-11-27 16:13:47,699 | INFO     | [data] control thread has finished
[2025-11-27 17:18:52] 2025-11-27 16:13:47,760 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 17:18:52] 2025-11-27 16:13:47,789 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 17:18:52] 2025-11-27 16:13:47,960 | INFO     | [payload] validate_post thread has finished
[2025-11-27 17:18:52] 2025-11-27 16:13:47,989 | INFO     | [payload] failed_post thread has finished
[2025-11-27 17:18:52] 2025-11-27 16:13:48,064 | INFO     | [payload] control thread has finished
[2025-11-27 17:18:52] 2025-11-27 16:13:48,132 | INFO     | all job control threads have been joined
[2025-11-27 17:18:52] 2025-11-27 16:13:48,171 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 17:18:52] 2025-11-27 16:13:48,172 | INFO     | [job] job monitor thread has finished
[2025-11-27 17:18:52] 2025-11-27 16:13:48,422 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 17:18:52] 2025-11-27 16:13:48,756 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:18:52] 2025-11-27 16:13:48,968 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 17:18:52] 2025-11-27 16:13:49,012 | INFO     | [data] copytool_in thread has finished
[2025-11-27 17:18:52] 2025-11-27 16:13:49,138 | INFO     | [job] control thread has finished
[2025-11-27 17:18:52] 2025-11-27 16:13:49,762 | INFO     | [job] queue monitor thread has finished
[2025-11-27 17:18:52] 2025-11-27 16:13:49,794 | INFO     | [data] copytool_out thread has finished
[2025-11-27 17:18:52] 2025-11-27 16:13:51,307 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 17:18:52] 2025-11-27 16:14:16,803 | INFO     | PID=2149730 has CPU usage=12.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 17:18:52] 2025-11-27 16:14:16,803 | INFO     | .. there are 6 such processes running
[2025-11-27 17:18:52] 2025-11-27 16:14:16,804 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 17:18:52] 2025-11-27 16:14:16,804 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 17:18:52] 2025-11-27 16:14:16,804 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 17:18:52] 2025-11-27 16:14:33,209 | INFO     | [monitor] cgroup control has ended
[2025-11-27 17:18:52] 2025-11-27 16:14:34,399 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22547657365312)>', '<ExcThread(monitor, started 22547416442624)>']
[2025-11-27 17:18:52] 2025-11-27 16:14:34,892 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 17:18:52] 2025-11-27 16:14:34,893 | INFO     | [monitor] control thread has ended
[2025-11-27 17:18:52] 2025-11-27 16:14:39,424 | INFO     | all workflow threads have been joined
[2025-11-27 17:18:52] 2025-11-27 16:14:39,424 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 17:18:52] 2025-11-27 16:14:39,424 | INFO     | traces error code: 0
[2025-11-27 17:18:52] 2025-11-27 16:14:39,424 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 17:18:52] 2025-11-27 16:14:39,579 [wrapper] ==== pilot stdout END ====
[2025-11-27 17:18:52] 2025-11-27 16:14:39,583 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 17:18:52] 2025-11-27 16:14:39,587 [wrapper] pilotpid: 2149730
[2025-11-27 17:18:52] 2025-11-27 16:14:39,590 [wrapper] Pilot exit status: 0
[2025-11-27 17:18:52] 2025-11-27 16:14:39,605 [wrapper] pandaids: 6893879634
[2025-11-27 17:18:52] 2025-11-27 16:14:39,770 [wrapper] cleanup supervisor_pilot 3443613 2149731
[2025-11-27 17:18:52] 2025-11-27 16:14:39,774 [wrapper] Test setup, not cleaning
[2025-11-27 17:18:52] 2025-11-27 16:14:39,778 [wrapper] apfmon messages muted
[2025-11-27 17:18:52] 2025-11-27 16:14:39,782 [wrapper] ==== wrapper stdout END ====
[2025-11-27 17:18:52] 2025-11-27 16:14:39,786 [wrapper] ==== wrapper stderr END ====
[2025-11-27 17:18:52]  *** Error codes and diagnostics ***
[2025-11-27 17:18:52]     "exeErrorCode": 0,
[2025-11-27 17:18:52]     "exeErrorDiag": "",
[2025-11-27 17:18:52]     "pilotErrorCode": 0,
[2025-11-27 17:18:52]     "pilotErrorDiag": "",
[2025-11-27 17:18:52]  *** Listing of results directory ***
[2025-11-27 17:18:52] total 1315628
[2025-11-27 17:18:52] -rw-r--r-- 1 boinc boinc    576529 Nov 20 20:10 pilot3.tar.gz
[2025-11-27 17:18:52] -rw-r--r-- 1 boinc boinc      5112 Nov 20 20:15 queuedata.json
[2025-11-27 17:18:52] -rwx------ 1 boinc boinc     36292 Nov 20 20:16 runpilot2-wrapper.sh
[2025-11-27 17:18:52] -rw-r--r-- 1 boinc boinc       100 Nov 27 02:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 17:18:52] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 02:03 run_atlas
[2025-11-27 17:18:52] -rw-r--r-- 1 boinc boinc       105 Nov 27 02:03 job.xml
[2025-11-27 17:18:52] -rw-r--r-- 1 boinc boinc      6687 Nov 27 02:03 init_data.xml
[2025-11-27 17:18:52] -rw-r--r-- 2 boinc boinc 410296557 Nov 27 02:03 EVNT.47493127._000823.pool.root.1
[2025-11-27 17:18:52] -rw-r--r-- 2 boinc boinc     15847 Nov 27 02:03 start_atlas.sh
[2025-11-27 17:18:52] drwxrwx--x 2 boinc boinc      4096 Nov 27 02:03 shared
[2025-11-27 17:18:52] -rw-r--r-- 2 boinc boinc    590103 Nov 27 02:03 input.tar.gz
[2025-11-27 17:18:52] -rw-r--r-- 1 boinc boinc         0 Nov 27 02:03 boinc_lockfile
[2025-11-27 17:18:52] -rw-r--r-- 1 boinc boinc      2785 Nov 27 02:03 pandaJob.out
[2025-11-27 17:18:52] -rw------- 1 boinc boinc    991546 Nov 27 02:04 agis_schedconf.cvmfs.json
[2025-11-27 17:18:52] drwx------ 5 boinc boinc      4096 Nov 27 02:04 pilot3
[2025-11-27 17:18:52] -rw-r--r-- 1 boinc boinc       532 Nov 27 17:04 boinc_task_state.xml
[2025-11-27 17:18:52] -rw------- 1 boinc boinc 914612587 Nov 27 17:12 HITS.47523449._008226.pool.root.1
[2025-11-27 17:18:52] -rw------- 1 boinc boinc      1042 Nov 27 17:13 memory_monitor_summary.json
[2025-11-27 17:18:52] -rw------- 1 boinc boinc   1516240 Nov 27 17:13 agis_ddmendpoints.agis.ALL.json
[2025-11-27 17:18:52] -rw------- 1 boinc boinc   1660447 Nov 27 17:13 log.47523449._008226.job.log.tgz.1
[2025-11-27 17:18:52] -rw------- 1 boinc boinc        95 Nov 27 17:13 pilot_heartbeat.json
[2025-11-27 17:18:52] -rw------- 1 boinc boinc      8594 Nov 27 17:13 heartbeat.json
[2025-11-27 17:18:52] -rw------- 1 boinc boinc      4836 Nov 27 17:14 pilotlog.txt
[2025-11-27 17:18:52] -rw------- 1 boinc boinc   7520596 Nov 27 17:14 log.47523449._008226.job.log.1
[2025-11-27 17:18:52] -rw------- 1 boinc boinc       353 Nov 27 17:14 output.list
[2025-11-27 17:18:52] -rw-r--r-- 1 boinc boinc       620 Nov 27 17:14 runtime_log
[2025-11-27 17:18:52] -rw------- 1 boinc boinc   9205760 Nov 27 17:14 result.tar.gz
[2025-11-27 17:18:52] -rw-r--r-- 1 boinc boinc      9223 Nov 27 17:14 runtime_log.err
[2025-11-27 17:18:52] -rw------- 1 boinc boinc       670 Nov 27 17:14 gICMDmxJPg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjQIKDmz4zlim.diag
[2025-11-27 17:18:52] -rw-r--r-- 1 boinc boinc        28 Nov 27 17:18 wrapper_checkpoint.txt
[2025-11-27 17:18:52] -rw-r--r-- 1 boinc boinc      8192 Nov 27 17:18 boinc_mmap_file
[2025-11-27 17:18:52] -rw-r--r-- 1 boinc boinc     21055 Nov 27 17:18 stderr.txt
[2025-11-27 17:18:53] HITS file was successfully produced:
[2025-11-27 17:18:53] -rw------- 1 boinc boinc 914612587 Nov 27 17:12 shared/HITS.pool.root.1
[2025-11-27 17:18:53]  *** Contents of shared directory: ***
[2025-11-27 17:18:53] total 1303460
[2025-11-27 17:18:53] -rw-r--r-- 2 boinc boinc 410296557 Nov 27 02:03 ATLAS.root_0
[2025-11-27 17:18:53] -rw-r--r-- 2 boinc boinc     15847 Nov 27 02:03 start_atlas.sh
[2025-11-27 17:18:53] -rw-r--r-- 2 boinc boinc    590103 Nov 27 02:03 input.tar.gz
[2025-11-27 17:18:53] -rw------- 1 boinc boinc 914612587 Nov 27 17:12 HITS.pool.root.1
[2025-11-27 17:18:53] -rw------- 1 boinc boinc   9205760 Nov 27 17:14 result.tar.gz
17:18:54 (2145670): run_atlas exited; CPU time 221877.803209
17:18:54 (2145670): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN