Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:55:03 (1062322): wrapper (7.7.26015): starting
02:55:03 (1062322): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 02:55:03] Arguments: --nthreads 4
[2025-11-21 02:55:03] Threads: 4
[2025-11-21 02:55:03] Checking for CVMFS
[2025-11-21 02:55:03] No cvmfs_config command found, will try listing directly
[2025-11-21 02:55:03] CVMFS is ok
[2025-11-21 02:55:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 02:55:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 02:55:03] Further information can be found at the LHC@home message board.
[2025-11-21 02:55:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 02:55:03] Checking for apptainer binary...
[2025-11-21 02:55:03] which: no apptainer in ((null))
[2025-11-21 02:55:03] apptainer is not installed, using version from CVMFS
[2025-11-21 02:55:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 02:55:03] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot128/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2025-11-21 02:55:03] apptainer works
[2025-11-21 02:55:03] Set ATHENA_PROC_NUMBER=4
[2025-11-21 02:55:03] Set ATHENA_CORE_NUMBER=4
[2025-11-21 02:55:03] Starting ATLAS job with PandaID=6893867539
[2025-11-21 02:55:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot128/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 19:20:19]  *** The last 200 lines of the pilot log: ***
[2025-11-21 19:20:19] 2025-11-21 18:13:13,293 | INFO     | time since job start (58675s) is within the limit (172800.0s)
[2025-11-21 19:20:19] 2025-11-21 18:13:13,740 | INFO     | monitor loop #3915: job 0:6893867539 is in state 'finished'
[2025-11-21 19:20:19] 2025-11-21 18:13:13,740 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 19:20:19] 2025-11-21 18:13:14,393 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 19:20:19] 2025-11-21 18:13:14,416 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2686.350773437499
[2025-11-21 19:20:19] 2025-11-21 18:13:14,442 | INFO     | using path: /scratch/boinc/var/slot128/slots/1/PanDA_Pilot-6893867539/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 19:20:19] 2025-11-21 18:13:14,442 | INFO     | extracted standard info from prmon json
[2025-11-21 19:20:19] 2025-11-21 18:13:14,442 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 19:20:19] 2025-11-21 18:13:14,443 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 19:20:19] 2025-11-21 18:13:14,461 | INFO     | fitting pss+swap vs Time
[2025-11-21 19:20:19] 2025-11-21 18:13:14,462 | INFO     | sum of square deviations: 276059896866.2001
[2025-11-21 19:20:19] 2025-11-21 18:13:14,485 | INFO     | sum of deviations: 789075247214.2084
[2025-11-21 19:20:19] 2025-11-21 18:13:14,485 | INFO     | mean x: 1763719464.5176716
[2025-11-21 19:20:19] 2025-11-21 18:13:14,485 | INFO     | mean y: 2272498.6642411645
[2025-11-21 19:20:19] 2025-11-21 18:13:14,485 | INFO     | intersect: -5039051461.386798
[2025-11-21 19:20:19] 2025-11-21 18:13:14,486 | INFO     | chi2: 4.854987489363906
[2025-11-21 19:20:19] 2025-11-21 18:13:14,488 | INFO     | sum of square deviations: 271777765948.69797
[2025-11-21 19:20:19] 2025-11-21 18:13:14,510 | INFO     | sum of deviations: 1014213672104.5366
[2025-11-21 19:20:19] 2025-11-21 18:13:14,510 | INFO     | mean x: 1763719312.0177639
[2025-11-21 19:20:19] 2025-11-21 18:13:14,510 | INFO     | mean y: 2280510.6154649947
[2025-11-21 19:20:19] 2025-11-21 18:13:14,510 | INFO     | intersect: -6579524420.185545
[2025-11-21 19:20:19] 2025-11-21 18:13:14,511 | INFO     | chi2: 2.1768080524741573
[2025-11-21 19:20:19] 2025-11-21 18:13:14,511 | INFO     | current chi2=2.1768080524741573 (change=55.16346731597119 %)
[2025-11-21 19:20:19] 2025-11-21 18:13:14,512 | INFO     | sum of square deviations: 267540147493.6961
[2025-11-21 19:20:19] 2025-11-21 18:13:14,534 | INFO     | sum of deviations: 1022222378962.3931
[2025-11-21 19:20:19] 2025-11-21 18:13:14,534 | INFO     | mean x: 1763719159.517857
[2025-11-21 19:20:19] 2025-11-21 18:13:14,534 | INFO     | mean y: 2280796.3886554623
[2025-11-21 19:20:19] 2025-11-21 18:13:14,534 | INFO     | intersect: -6736570220.752154
[2025-11-21 19:20:19] 2025-11-21 18:13:14,535 | INFO     | chi2: 2.1254504917506294
[2025-11-21 19:20:19] 2025-11-21 18:13:14,535 | INFO     | current chi2=2.1254504917506294 (change=2.3593058958576982 %)
[2025-11-21 19:20:19] 2025-11-21 18:13:14,535 | INFO     | right removable region: 951
[2025-11-21 19:20:19] 2025-11-21 18:13:14,536 | INFO     | sum of square deviations: 271777755578.698
[2025-11-21 19:20:19] 2025-11-21 18:13:14,557 | INFO     | sum of deviations: 602702423430.7996
[2025-11-21 19:20:19] 2025-11-21 18:13:14,557 | INFO     | mean x: 1763719617.0177639
[2025-11-21 19:20:19] 2025-11-21 18:13:14,557 | INFO     | mean y: 2279124.9529780564
[2025-11-21 19:20:19] 2025-11-21 18:13:14,558 | INFO     | intersect: -3908997885.800164
[2025-11-21 19:20:19] 2025-11-21 18:13:14,559 | INFO     | chi2: 2.8367203364456772
[2025-11-21 19:20:19] 2025-11-21 18:13:14,559 | INFO     | current chi2=2.8367203364456772 (change=41.57100625572692 %)
[2025-11-21 19:20:19] 2025-11-21 18:13:14,560 | INFO     | sum of square deviations: 267540126753.69614
[2025-11-21 19:20:19] 2025-11-21 18:13:14,581 | INFO     | sum of deviations: 572556627115.7496
[2025-11-21 19:20:19] 2025-11-21 18:13:14,581 | INFO     | mean x: 1763719769.517857
[2025-11-21 19:20:19] 2025-11-21 18:13:14,581 | INFO     | mean y: 2280209.367647059
[2025-11-21 19:20:19] 2025-11-21 18:13:14,581 | INFO     | intersect: -3772216927.4382453
[2025-11-21 19:20:19] 2025-11-21 18:13:14,582 | INFO     | chi2: 2.818605058803332
[2025-11-21 19:20:19] 2025-11-21 18:13:14,582 | INFO     | current chi2=2.818605058803332 (change=0.6385993504401397 %)
[2025-11-21 19:20:19] 2025-11-21 18:13:14,582 | INFO     | left removable region: 20
[2025-11-21 19:20:19] 2025-11-21 18:13:14,583 | INFO     | sum of square deviations: 250222936122.68903
[2025-11-21 19:20:19] 2025-11-21 18:13:14,603 | INFO     | sum of deviations: 767021199890.6504
[2025-11-21 19:20:19] 2025-11-21 18:13:14,604 | INFO     | mean x: 1763719739.01826
[2025-11-21 19:20:19] 2025-11-21 18:13:14,604 | INFO     | mean y: 2289933.549946294
[2025-11-21 19:20:19] 2025-11-21 18:13:14,604 | INFO     | intersect: -5404130642.656954
[2025-11-21 19:20:19] 2025-11-21 18:13:14,605 | INFO     | chi2: 0.06944275317655767
[2025-11-21 19:20:19] 2025-11-21 18:13:14,605 | INFO     | current memory leak: 3.07 B/s (using 931 data points, chi2=0.07)
[2025-11-21 19:20:19] 2025-11-21 18:13:14,607 | INFO     | could have reported an average CPU frequency of 2687 MHz (36 samples)
[2025-11-21 19:20:19] 2025-11-21 18:13:14,607 | INFO     | ..............................
[2025-11-21 19:20:19] 2025-11-21 18:13:14,607 | INFO     | . Timing measurements:
[2025-11-21 19:20:19] 2025-11-21 18:13:14,607 | INFO     | . get job = 0 s
[2025-11-21 19:20:19] 2025-11-21 18:13:14,607 | INFO     | . initial setup = 1 s
[2025-11-21 19:20:19] 2025-11-21 18:13:14,607 | INFO     | . payload setup = 9 s
[2025-11-21 19:20:19] 2025-11-21 18:13:14,607 | INFO     | . stage-in = 0 s
[2025-11-21 19:20:19] 2025-11-21 18:13:14,607 | INFO     | . payload execution = 58632 s
[2025-11-21 19:20:19] 2025-11-21 18:13:14,607 | INFO     | . stage-out = 4 s
[2025-11-21 19:20:19] 2025-11-21 18:13:14,607 | INFO     | . log creation = 0 s
[2025-11-21 19:20:19] 2025-11-21 18:13:14,608 | INFO     | ..............................
[2025-11-21 19:20:19] 2025-11-21 18:13:14,707 | INFO     | 
[2025-11-21 19:20:19] 2025-11-21 18:13:14,707 | INFO     | job summary report
[2025-11-21 19:20:19] 2025-11-21 18:13:14,707 | INFO     | --------------------------------------------------
[2025-11-21 19:20:19] 2025-11-21 18:13:14,707 | INFO     | PanDA job id: 6893867539
[2025-11-21 19:20:19] 2025-11-21 18:13:14,707 | INFO     | task id: 47523449
[2025-11-21 19:20:19] 2025-11-21 18:13:14,707 | INFO     | errors: (none)
[2025-11-21 19:20:19] 2025-11-21 18:13:14,707 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 19:20:19] 2025-11-21 18:13:14,708 | INFO     | pilot state: finished 
[2025-11-21 19:20:19] 2025-11-21 18:13:14,708 | INFO     | transexitcode: 0
[2025-11-21 19:20:19] 2025-11-21 18:13:14,708 | INFO     | exeerrorcode: 0
[2025-11-21 19:20:19] 2025-11-21 18:13:14,708 | INFO     | exeerrordiag: 
[2025-11-21 19:20:19] 2025-11-21 18:13:14,708 | INFO     | exitcode: 0
[2025-11-21 19:20:19] 2025-11-21 18:13:14,708 | INFO     | exitmsg: OK
[2025-11-21 19:20:19] 2025-11-21 18:13:14,708 | INFO     | cpuconsumptiontime: 234684 s
[2025-11-21 19:20:19] 2025-11-21 18:13:14,708 | INFO     | nevents: 1000
[2025-11-21 19:20:19] 2025-11-21 18:13:14,708 | INFO     | neventsw: 0
[2025-11-21 19:20:19] 2025-11-21 18:13:14,708 | INFO     | pid: 1076009
[2025-11-21 19:20:19] 2025-11-21 18:13:14,708 | INFO     | pgrp: 1076009
[2025-11-21 19:20:19] 2025-11-21 18:13:14,708 | INFO     | corecount: 4
[2025-11-21 19:20:19] 2025-11-21 18:13:14,708 | INFO     | event service: False
[2025-11-21 19:20:19] 2025-11-21 18:13:14,709 | INFO     | sizes: {0: 2298819, 7: 2299081, 11: 2299109, 58646: 2352413, 58651: 2361515, 58658: 2361705}
[2025-11-21 19:20:19] 2025-11-21 18:13:14,709 | INFO     | --------------------------------------------------
[2025-11-21 19:20:19] 2025-11-21 18:13:14,709 | INFO     | 
[2025-11-21 19:20:19] 2025-11-21 18:13:14,709 | INFO     | executing command: ls -lF /scratch/boinc/var/slot128/slots/1
[2025-11-21 19:20:19] 2025-11-21 18:13:14,739 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 19:20:19] 2025-11-21 18:13:14,739 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 19:20:19] 2025-11-21 18:13:14,740 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 19:20:19] 2025-11-21 18:13:14,740 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 19:20:19] 2025-11-21 18:13:14,740 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 19:20:19] 2025-11-21 18:13:14,740 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 19:20:19] 2025-11-21 18:13:14,740 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 19:20:19] 2025-11-21 18:13:14,740 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 19:20:19] 2025-11-21 18:13:14,740 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 19:20:19] 2025-11-21 18:13:14,740 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 19:20:19] 2025-11-21 18:13:14,740 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 19:20:19] 2025-11-21 18:13:14,741 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 19:20:19] 2025-11-21 18:13:14,741 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 19:20:19] 2025-11-21 18:13:14,741 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 19:20:19] 2025-11-21 18:13:14,741 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 19:20:19] 2025-11-21 18:13:14,741 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 19:20:19] 2025-11-21 18:13:14,741 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 19:20:19] 2025-11-21 18:13:14,741 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 19:20:19] 2025-11-21 18:13:14,741 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 19:20:19] 2025-11-21 18:13:14,741 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 19:20:19] 2025-11-21 18:13:14,742 | INFO     | job 6893867539 has completed (purged errors)
[2025-11-21 19:20:19] 2025-11-21 18:13:14,742 | INFO     | overall cleanup function is called
[2025-11-21 19:20:19] 2025-11-21 18:13:15,758 | INFO     | --- collectZombieJob: --- 10, [1076009]
[2025-11-21 19:20:19] 2025-11-21 18:13:15,758 | INFO     | zombie collector waiting for pid 1076009
[2025-11-21 19:20:19] 2025-11-21 18:13:15,758 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 19:20:19] 2025-11-21 18:13:15,758 | INFO     | collected zombie processes
[2025-11-21 19:20:19] 2025-11-21 18:13:15,758 | INFO     | will attempt to kill all subprocesses of pid=1076009
[2025-11-21 19:20:19] 2025-11-21 18:13:16,602 | INFO     | process IDs to be killed: [1076009] (in reverse order)
[2025-11-21 19:20:19] 2025-11-21 18:13:16,874 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 19:20:19] 2025-11-21 18:13:16,875 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 19:20:19] 2025-11-21 18:13:16,907 | INFO     | did not find any defunct processes belonging to 1076009
[2025-11-21 19:20:19] 2025-11-21 18:13:16,938 | INFO     | did not find any defunct processes belonging to 1076009
[2025-11-21 19:20:19] 2025-11-21 18:13:16,940 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 19:20:19] 2025-11-21 18:13:16,940 | INFO     | ready for new job
[2025-11-21 19:20:19] 2025-11-21 18:13:16,941 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 19:20:19] 2025-11-21 18:13:16,950 | INFO     | ***************************************
[2025-11-21 19:20:19] 2025-11-21 18:13:16,953 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 19:20:19] 2025-11-21 18:13:16,953 | INFO     | ***************************************
[2025-11-21 19:20:19] 2025-11-21 18:13:16,954 | INFO     | 
[2025-11-21 19:20:19] 2025-11-21 18:13:16,965 | INFO     | architecture information:
[2025-11-21 19:20:19] 2025-11-21 18:13:16,966 | INFO     | executing command: cat /etc/os-release
[2025-11-21 19:20:19] 2025-11-21 18:13:16,994 | INFO     | cat /etc/os-release:
[2025-11-21 19:20:19] NAME="CentOS Linux"
[2025-11-21 19:20:19] VERSION="7 (Core)"
[2025-11-21 19:20:19] ID="centos"
[2025-11-21 19:20:19] ID_LIKE="rhel fedora"
[2025-11-21 19:20:19] VERSION_ID="7"
[2025-11-21 19:20:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 19:20:19] ANSI_COLOR="0;31"
[2025-11-21 19:20:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 19:20:19] HOME_URL="https://www.centos.org/"
[2025-11-21 19:20:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 19:20:19] 
[2025-11-21 19:20:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 19:20:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 19:20:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 19:20:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 19:20:19] 
[2025-11-21 19:20:19] 2025-11-21 18:13:16,995 | INFO     | ***************************************
[2025-11-21 19:20:19] 2025-11-21 18:13:17,498 | INFO     | executing command: df -mP /scratch/boinc/var/slot128/slots/1
[2025-11-21 19:20:19] 2025-11-21 18:13:17,523 | INFO     | sufficient remaining disk space (3308268814336 B)
[2025-11-21 19:20:19] 2025-11-21 18:13:17,523 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 19:20:19] 2025-11-21 18:13:17,523 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 19:20:19] 2025-11-21 18:13:17,523 | INFO     | update_server=False
[2025-11-21 19:20:19] 2025-11-21 18:13:17,524 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 19:20:19] 2025-11-21 18:13:17,524 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 19:20:19] 2025-11-21 18:13:17,524 | INFO     | aborting loop
[2025-11-21 19:20:19] 2025-11-21 18:13:17,707 | INFO     | all payload control threads have been joined
[2025-11-21 19:20:19] 2025-11-21 18:13:17,907 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 19:20:19] 2025-11-21 18:13:18,011 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 19:20:19] 2025-11-21 18:13:18,229 | INFO     | all data control threads have been joined
[2025-11-21 19:20:19] 2025-11-21 18:13:18,529 | INFO     | [job] retrieve thread has finished
[2025-11-21 19:20:19] 2025-11-21 18:13:18,530 | INFO     | [job] job monitor thread has finished
[2025-11-21 19:20:19] 2025-11-21 18:13:18,712 | INFO     | [payload] control thread has finished
[2025-11-21 19:20:19] 2025-11-21 18:13:18,739 | INFO     | all job control threads have been joined
[2025-11-21 19:20:19] 2025-11-21 18:13:18,862 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 19:20:19] 2025-11-21 18:13:19,101 | INFO     | [data] copytool_in thread has finished
[2025-11-21 19:20:19] 2025-11-21 18:13:19,104 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 19:20:19] 2025-11-21 18:13:19,234 | INFO     | [data] control thread has finished
[2025-11-21 19:20:19] 2025-11-21 18:13:19,586 | INFO     | [payload] failed_post thread has finished
[2025-11-21 19:20:19] 2025-11-21 18:13:19,621 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 19:20:19] 2025-11-21 18:13:19,719 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 19:20:19] 2025-11-21 18:13:19,745 | INFO     | [job] control thread has finished
[2025-11-21 19:20:19] 2025-11-21 18:13:19,894 | INFO     | [job] validate thread has finished
[2025-11-21 19:20:19] 2025-11-21 18:13:19,913 | INFO     | [data] copytool_out thread has finished
[2025-11-21 19:20:19] 2025-11-21 18:13:19,997 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 19:20:19] 2025-11-21 18:13:19,999 | INFO     | [payload] validate_post thread has finished
[2025-11-21 19:20:19] 2025-11-21 18:13:20,724 | INFO     | [job] queue monitor thread has finished
[2025-11-21 19:20:19] 2025-11-21 18:13:22,022 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 19:20:19] 2025-11-21 18:13:47,403 | INFO     | PID=1066369 has CPU usage=17.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-21 19:20:19] 2025-11-21 18:13:47,403 | INFO     | .. there are 9 such processes running
[2025-11-21 19:20:19] 2025-11-21 18:13:47,403 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 19:20:19] 2025-11-21 18:13:47,403 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 19:20:19] 2025-11-21 18:13:47,403 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 19:20:19] 2025-11-21 18:13:56,285 | INFO     | [monitor] cgroup control has ended
[2025-11-21 19:20:19] 2025-11-21 18:13:56,853 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23177225226048)>', '<ExcThread(monitor, started 23176492828416)>']
[2025-11-21 19:20:19] 2025-11-21 18:13:57,457 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 19:20:19] 2025-11-21 18:13:57,458 | INFO     | [monitor] control thread has ended
[2025-11-21 19:20:19] 2025-11-21 18:14:01,878 | INFO     | all workflow threads have been joined
[2025-11-21 19:20:19] 2025-11-21 18:14:01,878 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 19:20:19] 2025-11-21 18:14:01,878 | INFO     | traces error code: 0
[2025-11-21 19:20:19] 2025-11-21 18:14:01,878 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 19:20:19] 2025-11-21 18:14:02,069 [wrapper] ==== pilot stdout END ====
[2025-11-21 19:20:19] 2025-11-21 18:14:02,073 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 19:20:19] 2025-11-21 18:14:02,077 [wrapper] pilotpid: 1066369
[2025-11-21 19:20:19] 2025-11-21 18:14:02,081 [wrapper] Pilot exit status: 0
[2025-11-21 19:20:19] 2025-11-21 18:14:02,096 [wrapper] pandaids: 6893867539
[2025-11-21 19:20:19] 2025-11-21 18:14:02,293 [wrapper] cleanup supervisor_pilot 2764415 1066370
[2025-11-21 19:20:19] 2025-11-21 18:14:02,297 [wrapper] Test setup, not cleaning
[2025-11-21 19:20:19] 2025-11-21 18:14:02,301 [wrapper] apfmon messages muted
[2025-11-21 19:20:19] 2025-11-21 18:14:02,304 [wrapper] ==== wrapper stdout END ====
[2025-11-21 19:20:19] 2025-11-21 18:14:02,308 [wrapper] ==== wrapper stderr END ====
[2025-11-21 19:20:19]  *** Error codes and diagnostics ***
[2025-11-21 19:20:19]     "exeErrorCode": 0,
[2025-11-21 19:20:19]     "exeErrorDiag": "",
[2025-11-21 19:20:19]     "pilotErrorCode": 0,
[2025-11-21 19:20:19]     "pilotErrorDiag": "",
[2025-11-21 19:20:19]  *** Listing of results directory ***
[2025-11-21 19:20:19] total 1317052
[2025-11-21 19:20:19] -rw-r--r-- 1 boinc boinc    576529 Nov 20 15:06 pilot3.tar.gz
[2025-11-21 19:20:19] -rwx------ 1 boinc boinc     36292 Nov 20 15:31 runpilot2-wrapper.sh
[2025-11-21 19:20:19] -rw-r--r-- 1 boinc boinc      5112 Nov 20 15:31 queuedata.json
[2025-11-21 19:20:19] -rw-r--r-- 1 boinc boinc       100 Nov 21 01:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 19:20:19] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 01:38 run_atlas
[2025-11-21 19:20:19] -rw-r--r-- 1 boinc boinc       105 Nov 21 01:38 job.xml
[2025-11-21 19:20:19] -rw-r--r-- 2 boinc boinc 411734900 Nov 21 02:55 EVNT.47493127._000619.pool.root.1
[2025-11-21 19:20:19] -rw-r--r-- 1 boinc boinc      6686 Nov 21 02:55 init_data.xml
[2025-11-21 19:20:19] -rw-r--r-- 2 boinc boinc     15847 Nov 21 02:55 start_atlas.sh
[2025-11-21 19:20:19] drwxrwx--x 2 boinc boinc      4096 Nov 21 02:55 shared
[2025-11-21 19:20:19] -rw-r--r-- 2 boinc boinc    590099 Nov 21 02:55 input.tar.gz
[2025-11-21 19:20:19] -rw-r--r-- 1 boinc boinc         0 Nov 21 02:55 boinc_lockfile
[2025-11-21 19:20:19] -rw-r--r-- 1 boinc boinc      2786 Nov 21 02:55 pandaJob.out
[2025-11-21 19:20:19] -rw------- 1 boinc boinc    989817 Nov 21 02:55 agis_schedconf.cvmfs.json
[2025-11-21 19:20:19] drwx------ 5 boinc boinc      4096 Nov 21 02:55 pilot3
[2025-11-21 19:20:19] -rw-r--r-- 1 boinc boinc       532 Nov 21 19:06 boinc_task_state.xml
[2025-11-21 19:20:19] -rw------- 1 boinc boinc 913507139 Nov 21 19:12 HITS.47523449._006190.pool.root.1
[2025-11-21 19:20:19] -rw------- 1 boinc boinc      1038 Nov 21 19:12 memory_monitor_summary.json
[2025-11-21 19:20:19] -rw------- 1 boinc boinc   1526164 Nov 21 19:13 agis_ddmendpoints.agis.ALL.json
[2025-11-21 19:20:19] -rw------- 1 boinc boinc   1701741 Nov 21 19:13 log.47523449._006190.job.log.tgz.1
[2025-11-21 19:20:19] -rw------- 1 boinc boinc        95 Nov 21 19:13 pilot_heartbeat.json
[2025-11-21 19:20:19] -rw------- 1 boinc boinc      7927 Nov 21 19:13 heartbeat.json
[2025-11-21 19:20:19] -rw------- 1 boinc boinc      4836 Nov 21 19:14 pilotlog.txt
[2025-11-21 19:20:19] -rw------- 1 boinc boinc   8045931 Nov 21 19:14 log.47523449._006190.job.log.1
[2025-11-21 19:20:19] -rw------- 1 boinc boinc       353 Nov 21 19:14 output.list
[2025-11-21 19:20:19] -rw-r--r-- 1 boinc boinc       620 Nov 21 19:14 runtime_log
[2025-11-21 19:20:19] -rw------- 1 boinc boinc   9768960 Nov 21 19:14 result.tar.gz
[2025-11-21 19:20:19] -rw-r--r-- 1 boinc boinc      9223 Nov 21 19:14 runtime_log.err
[2025-11-21 19:20:19] -rw------- 1 boinc boinc       671 Nov 21 19:14 EInKDmPsKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmf5HKDmT3ZyFo.diag
[2025-11-21 19:20:19] -rw-r--r-- 1 boinc boinc        28 Nov 21 19:20 wrapper_checkpoint.txt
[2025-11-21 19:20:19] -rw-r--r-- 1 boinc boinc      8192 Nov 21 19:20 boinc_mmap_file
[2025-11-21 19:20:19] -rw-r--r-- 1 boinc boinc     21099 Nov 21 19:20 stderr.txt
[2025-11-21 19:20:19] HITS file was successfully produced:
[2025-11-21 19:20:19] -rw------- 1 boinc boinc 913507139 Nov 21 19:12 shared/HITS.pool.root.1
[2025-11-21 19:20:19]  *** Contents of shared directory: ***
[2025-11-21 19:20:19] total 1304332
[2025-11-21 19:20:19] -rw-r--r-- 2 boinc boinc 411734900 Nov 21 02:55 ATLAS.root_0
[2025-11-21 19:20:19] -rw-r--r-- 2 boinc boinc     15847 Nov 21 02:55 start_atlas.sh
[2025-11-21 19:20:19] -rw-r--r-- 2 boinc boinc    590099 Nov 21 02:55 input.tar.gz
[2025-11-21 19:20:19] -rw------- 1 boinc boinc 913507139 Nov 21 19:12 HITS.pool.root.1
[2025-11-21 19:20:19] -rw------- 1 boinc boinc   9768960 Nov 21 19:14 result.tar.gz
19:20:20 (1062322): run_atlas exited; CPU time 237590.398407
19:20:20 (1062322): called boinc_finish(0)

</stderr_txt>
]]>

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