Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:25:39 (4135509): wrapper (7.7.26015): starting
16:25:39 (4135509): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 16:25:39] Arguments: --nthreads 12
[2025-11-20 16:25:39] Threads: 12
[2025-11-20 16:25:39] Checking for CVMFS
[2025-11-20 16:25:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 16:25:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 16:25:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 16:25:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 16:25:39] 2.11.5.0 3591329 20411 222124 153102 3 286 32711211 45568001 13488 130560 0 176001734 99.762 129877240 27938 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-20 16:25:39] CVMFS is ok
[2025-11-20 16:25:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 16:25:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 16:25:39] Further information can be found at the LHC@home message board.
[2025-11-20 16:25:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 16:25:39] Checking for apptainer binary...
[2025-11-20 16:25:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 16:25:39] Running /usr/bin/apptainer --version
[2025-11-20 16:25:39] apptainer version 1.4.1-1.el9
[2025-11-20 16:25:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 16:25:39] wns0096.triumf.lcg
[2025-11-20 16:25:39] apptainer works
[2025-11-20 16:25:39] Set ATHENA_PROC_NUMBER=12
[2025-11-20 16:25:39] Set ATHENA_CORE_NUMBER=12
[2025-11-20 16:25:39] Starting ATLAS job with PandaID=6893879199
[2025-11-20 16:25:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 16:29:56]  *** The last 200 lines of the pilot log: ***
[2025-11-20 16:29:56] 2025-11-21 00:29:08,293 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 16:29:56] 2025-11-21 00:29:08,294 | WARNING  | wrong length of table data, x=[1763684775.0], y=[1037.0] (must be same and length>=4)
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | could have reported an average CPU frequency of 2567 MHz (4 samples)
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | ..............................
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | . Timing measurements:
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | . get job = 0 s
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | . initial setup = 2 s
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | . payload setup = 5 s
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | . stage-in = 0 s
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | . payload execution = 53 s
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | . stage-out = 0 s
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | . log creation = 0 s
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | ..............................
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 16:29:56] 2025-11-21 00:29:08,296 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893879199/pilotlog.txt
[2025-11-20 16:29:56] 2025-11-21 00:29:08,307 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-20 16:29:56] - Log from pilotlog.txt -
[2025-11-20 16:29:56] 2025-11-21 00:29:08,292 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893879199/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 16:29:56] 2025-11-21 00:29:08,293 | INFO     | extracted standard info from prmon json
[2025-11-20 16:29:56] 2025-11-21 00:29:08,293 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 16:29:56] 2025-11-21 00:29:08,293 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 16:29:56] 2025-11-21 00:29:08,293 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 16:29:56] 2025-11-21 00:29:08,293 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 16:29:56] 2025-11-21 00:29:08,294 | WARNING  | wrong length of table data, x=[1763684775.0], y=[1037.0] (must be same and length>=4)
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | could have reported an average CPU frequency of 2567 MHz (4 samples)
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | ..............................
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | . Timing measurements:
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | . get job = 0 s
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | . initial setup = 2 s
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | . payload setup = 5 s
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | . stage-in = 0 s
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | . payload execution = 53 s
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | . stage-out = 0 s
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | . log creation = 0 s
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | ..............................
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 16:29:56] 2025-11-21 00:29:08,296 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893879199/pilotlog.txt
[2025-11-20 16:29:56] 2025-11-21 00:29:08,308 | WARNING  | 
[2025-11-20 16:29:56] [begin log extracts]
[2025-11-20 16:29:56] - Log from pilotlog.txt -
[2025-11-20 16:29:56] 2025-11-21 00:29:08,292 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893879199/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 16:29:56] 2025-11-21 00:29:08,293 | INFO     | extracted standard info from prmon json
[2025-11-20 16:29:56] 2025-11-21 00:29:08,293 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 16:29:56] 2025-11-21 00:29:08,293 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 16:29:56] 2025-11-21 00:29:08,293 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 16:29:56] 2025-11-21 00:29:08,293 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 16:29:56] 2025-11-21 00:29:08,294 | WARNING  | wrong length of table data, x=[1763684775.0], y=[1037.0] (must be same and length>=4)
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | could have reported an average CPU frequency of 2567 MHz (4 samples)
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | ..............................
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | . Timing measurements:
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | . get job = 0 s
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | . initial setup = 2 s
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | . payload setup = 5 s
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | . stage-in = 0 s
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | . payload execution = 53 s
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | . stage-out = 0 s
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | . log creation = 0 s
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | ..............................
[2025-11-20 16:29:56] 2025-11-21 00:29:08,295 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 16:29:56] 2025-11-21 00:29:08,296 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893879199/pilotlog.txt
[2025-11-20 16:29:56] [end log extracts]
[2025-11-20 16:29:56] 2025-11-21 00:29:08,308 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-20 16:29:56] 2025-11-21 00:29:08,309 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-20 16:29:56] 2025-11-21 00:29:08,366 | INFO     | 
[2025-11-20 16:29:56] 2025-11-21 00:29:08,366 | INFO     | job summary report
[2025-11-20 16:29:56] 2025-11-21 00:29:08,366 | INFO     | --------------------------------------------------
[2025-11-20 16:29:56] 2025-11-21 00:29:08,366 | INFO     | PanDA job id: 6893879199
[2025-11-20 16:29:56] 2025-11-21 00:29:08,366 | INFO     | task id: 47523449
[2025-11-20 16:29:56] 2025-11-21 00:29:08,366 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-20 16:26:59,478 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-20 16:29:56] 2025-11-21 00:29:08,366 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-20 16:29:56] 2025-11-21 00:29:08,366 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 16:29:56] 2025-11-21 00:29:08,366 | INFO     | pilot state: failed 
[2025-11-20 16:29:56] 2025-11-21 00:29:08,367 | INFO     | transexitcode: 65
[2025-11-20 16:29:56] 2025-11-21 00:29:08,367 | INFO     | exeerrorcode: 65
[2025-11-20 16:29:56] 2025-11-21 00:29:08,367 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-20 16:29:56] 2025-11-21 00:29:08,367 | INFO     | exitcode: 65
[2025-11-20 16:29:56] 2025-11-21 00:29:08,367 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-20 16:29:56] 2025-11-21 00:29:08,367 | INFO     | cpuconsumptiontime: 43 s
[2025-11-20 16:29:56] 2025-11-21 00:29:08,367 | INFO     | nevents: 0
[2025-11-20 16:29:56] 2025-11-21 00:29:08,367 | INFO     | neventsw: 0
[2025-11-20 16:29:56] 2025-11-21 00:29:08,367 | INFO     | pid: 4145725
[2025-11-20 16:29:56] 2025-11-21 00:29:08,367 | INFO     | pgrp: 4145725
[2025-11-20 16:29:56] 2025-11-21 00:29:08,367 | INFO     | corecount: 12
[2025-11-20 16:29:56] 2025-11-21 00:29:08,367 | INFO     | event service: False
[2025-11-20 16:29:56] 2025-11-21 00:29:08,367 | INFO     | sizes: {0: 2298753, 4: 2299015, 11: 2299043, 62: 2324440, 63: 2328730, 64: 2328758, 184: 2329080}
[2025-11-20 16:29:56] 2025-11-21 00:29:08,367 | INFO     | --------------------------------------------------
[2025-11-20 16:29:56] 2025-11-21 00:29:08,367 | INFO     | 
[2025-11-20 16:29:56] 2025-11-21 00:29:08,367 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-20 16:29:56] 2025-11-21 00:29:08,383 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 16:29:56] 2025-11-21 00:29:08,384 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 16:29:56] 2025-11-21 00:29:08,384 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 16:29:56] 2025-11-21 00:29:08,384 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 16:29:56] 2025-11-21 00:29:08,384 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 16:29:56] 2025-11-21 00:29:08,384 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 16:29:56] 2025-11-21 00:29:08,384 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 16:29:56] 2025-11-21 00:29:08,384 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 16:29:56] 2025-11-21 00:29:08,384 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 16:29:56] 2025-11-21 00:29:08,384 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 16:29:56] 2025-11-21 00:29:08,384 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 16:29:56] 2025-11-21 00:29:08,384 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 16:29:56] 2025-11-21 00:29:08,384 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 16:29:56] 2025-11-21 00:29:08,384 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 16:29:56] 2025-11-21 00:29:08,384 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 16:29:56] 2025-11-21 00:29:08,384 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 16:29:56] 2025-11-21 00:29:08,385 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 16:29:56] 2025-11-21 00:29:08,385 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 16:29:56] 2025-11-21 00:29:08,385 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 16:29:56] 2025-11-21 00:29:08,385 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 16:29:56] 2025-11-21 00:29:08,385 | INFO     | job 6893879199 has completed (purged errors)
[2025-11-20 16:29:56] 2025-11-21 00:29:08,385 | INFO     | overall cleanup function is called
[2025-11-20 16:29:56] 2025-11-21 00:29:09,393 | INFO     | --- collectZombieJob: --- 10, [4145725]
[2025-11-20 16:29:56] 2025-11-21 00:29:09,393 | INFO     | zombie collector waiting for pid 4145725
[2025-11-20 16:29:56] 2025-11-21 00:29:09,393 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 16:29:56] 2025-11-21 00:29:09,393 | INFO     | collected zombie processes
[2025-11-20 16:29:56] 2025-11-21 00:29:09,393 | INFO     | will attempt to kill all subprocesses of pid=4145725
[2025-11-20 16:29:56] 2025-11-21 00:29:09,586 | INFO     | process IDs to be killed: [4145725] (in reverse order)
[2025-11-20 16:29:56] 2025-11-21 00:29:09,663 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 16:29:56] 2025-11-21 00:29:09,664 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 16:29:56] 2025-11-21 00:29:09,673 | INFO     | did not find any defunct processes belonging to 4145725
[2025-11-20 16:29:56] 2025-11-21 00:29:09,683 | INFO     | did not find any defunct processes belonging to 4145725
[2025-11-20 16:29:56] 2025-11-21 00:29:09,683 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 16:29:56] 2025-11-21 00:29:09,684 | INFO     | ready for new job
[2025-11-20 16:29:56] 2025-11-21 00:29:09,684 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 16:29:56] 2025-11-21 00:29:09,685 | INFO     | ***************************************
[2025-11-20 16:29:56] 2025-11-21 00:29:09,685 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 16:29:56] 2025-11-21 00:29:09,686 | INFO     | ***************************************
[2025-11-20 16:29:56] 2025-11-21 00:29:09,686 | INFO     | 
[2025-11-20 16:29:56] 2025-11-21 00:29:09,688 | INFO     | architecture information:
[2025-11-20 16:29:56] 2025-11-21 00:29:09,688 | INFO     | executing command: cat /etc/os-release
[2025-11-20 16:29:56] 2025-11-21 00:29:09,700 | INFO     | cat /etc/os-release:
[2025-11-20 16:29:56] NAME="CentOS Linux"
[2025-11-20 16:29:56] VERSION="7 (Core)"
[2025-11-20 16:29:56] ID="centos"
[2025-11-20 16:29:56] ID_LIKE="rhel fedora"
[2025-11-20 16:29:56] VERSION_ID="7"
[2025-11-20 16:29:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 16:29:56] ANSI_COLOR="0;31"
[2025-11-20 16:29:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 16:29:56] HOME_URL="https://www.centos.org/"
[2025-11-20 16:29:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 16:29:56] 
[2025-11-20 16:29:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 16:29:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 16:29:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 16:29:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 16:29:56] 
[2025-11-20 16:29:56] 2025-11-21 00:29:09,700 | INFO     | ***************************************
[2025-11-20 16:29:56] 2025-11-21 00:29:10,203 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-20 16:29:56] 2025-11-21 00:29:10,216 | INFO     | sufficient remaining disk space (2041664503808 B)
[2025-11-20 16:29:56] 2025-11-21 00:29:10,216 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 16:29:56] 2025-11-21 00:29:10,216 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 16:29:56] 2025-11-21 00:29:10,216 | INFO     | update_server=False
[2025-11-20 16:29:56] 2025-11-21 00:29:10,216 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 16:29:56] 2025-11-21 00:29:10,216 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 16:29:56] 2025-11-21 00:29:10,217 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 16:29:56] 2025-11-21 00:29:10,217 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 16:29:56] 2025-11-21 00:29:10,218 | INFO     | aborting loop
[2025-11-20 16:29:56] 2025-11-21 00:29:10,551 | INFO     | all data control threads have been joined
[2025-11-20 16:29:56] 2025-11-21 00:29:11,171 | INFO     | all job control threads have been joined
[2025-11-20 16:29:56] 2025-11-21 00:29:11,221 | INFO     | [job] retrieve thread has finished
[2025-11-20 16:29:56] 2025-11-21 00:29:11,223 | INFO     | [job] queue monitor thread has finished
[2025-11-20 16:29:56] 2025-11-21 00:29:11,223 | INFO     | [job] job monitor thread has finished
[2025-11-20 16:29:56] 2025-11-21 00:29:11,290 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 16:29:56] 2025-11-21 00:29:11,527 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 16:29:56] 2025-11-21 00:29:11,557 | INFO     | [data] control thread has finished
[2025-11-20 16:29:56] 2025-11-21 00:29:11,577 | INFO     | all payload control threads have been joined
[2025-11-20 16:29:56] 2025-11-21 00:29:11,932 | INFO     | [data] copytool_in thread has finished
[2025-11-20 16:29:56] 2025-11-21 00:29:12,127 | INFO     | [job] validate thread has finished
[2025-11-20 16:29:56] 2025-11-21 00:29:12,127 | INFO     | [payload] validate_post thread has finished
[2025-11-20 16:29:56] 2025-11-21 00:29:12,176 | INFO     | [job] control thread has finished
[2025-11-20 16:29:56] 2025-11-21 00:29:12,181 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 16:29:56] 2025-11-21 00:29:12,223 | INFO     | [data] copytool_out thread has finished
[2025-11-20 16:29:56] 2025-11-21 00:29:12,229 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 16:29:56] 2025-11-21 00:29:12,376 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 16:29:56] 2025-11-21 00:29:12,582 | INFO     | [payload] control thread has finished
[2025-11-20 16:29:56] 2025-11-21 00:29:12,703 | INFO     | [payload] failed_post thread has finished
[2025-11-20 16:29:56] 2025-11-21 00:29:15,296 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 16:29:56] 2025-11-21 00:29:40,132 | INFO     | PID=4139168 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 16:29:56] 2025-11-21 00:29:40,132 | INFO     | .. there are 33 such processes running
[2025-11-20 16:29:56] 2025-11-21 00:29:40,133 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 16:29:56] 2025-11-21 00:29:40,133 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 16:29:56] 2025-11-21 00:29:40,133 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 16:29:56] 2025-11-21 00:29:49,376 | INFO     | [monitor] cgroup control has ended
[2025-11-20 16:29:56] 2025-11-21 00:29:51,399 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140650404112192)>', '<ExcThread(monitor, started 140650003539712)>']
[2025-11-20 16:29:56] 2025-11-21 00:29:52,191 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 16:29:56] 2025-11-21 00:29:52,191 | INFO     | [monitor] control thread has ended
[2025-11-20 16:29:56] 2025-11-21 00:29:56,424 | INFO     | all workflow threads have been joined
[2025-11-20 16:29:56] 2025-11-21 00:29:56,424 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 16:29:56] 2025-11-21 00:29:56,425 | INFO     | traces error code: 0
[2025-11-20 16:29:56] 2025-11-21 00:29:56,425 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 16:29:56] 2025-11-21 00:29:56,591 [wrapper] ==== pilot stdout END ====
[2025-11-20 16:29:56] 2025-11-21 00:29:56,593 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 16:29:56] 2025-11-21 00:29:56,596 [wrapper] pilotpid: 4139168
[2025-11-20 16:29:56] 2025-11-21 00:29:56,599 [wrapper] Pilot exit status: 0
[2025-11-20 16:29:56] 2025-11-21 00:29:56,607 [wrapper] pandaids: 6893879199
[2025-11-20 16:29:56] 2025-11-21 00:29:56,657 [wrapper] cleanup supervisor_pilot 4139174 4139169
[2025-11-20 16:29:56] 2025-11-21 00:29:56,660 [wrapper] Test setup, not cleaning
[2025-11-20 16:29:56] 2025-11-21 00:29:56,662 [wrapper] apfmon messages muted
[2025-11-20 16:29:56] 2025-11-21 00:29:56,664 [wrapper] ==== wrapper stdout END ====
[2025-11-20 16:29:56] 2025-11-21 00:29:56,666 [wrapper] ==== wrapper stderr END ====
[2025-11-20 16:29:56]  *** Error codes and diagnostics ***
[2025-11-20 16:29:56]     "exeErrorCode": 65,
[2025-11-20 16:29:56]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-20 16:29:56]     "pilotErrorCode": 1305,
[2025-11-20 16:29:56]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-20 16:29:56]  *** Listing of results directory ***
[2025-11-20 16:29:56] total 405912
[2025-11-20 16:29:56] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:10 queuedata.json
[2025-11-20 16:29:56] -rwx------. 1 boinc boinc     36292 Nov 20 11:10 runpilot2-wrapper.sh
[2025-11-20 16:29:56] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:10 pilot3.tar.gz
[2025-11-20 16:29:56] -rw-r--r--. 1 boinc boinc       100 Nov 20 16:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 16:29:56] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 16:25 run_atlas
[2025-11-20 16:29:56] -rw-r--r--. 1 boinc boinc       105 Nov 20 16:25 job.xml
[2025-11-20 16:29:56] -rw-r--r--. 1 boinc boinc      6595 Nov 20 16:25 init_data.xml
[2025-11-20 16:29:56] -rw-r--r--. 2 boinc boinc 411455056 Nov 20 16:25 EVNT.47493127._000818.pool.root.1
[2025-11-20 16:29:56] -rw-r--r--. 2 boinc boinc     15847 Nov 20 16:25 start_atlas.sh
[2025-11-20 16:29:56] drwxrwx--x. 2 boinc boinc      4096 Nov 20 16:25 shared
[2025-11-20 16:29:56] -rw-r--r--. 2 boinc boinc    590095 Nov 20 16:25 input.tar.gz
[2025-11-20 16:29:56] -rw-r--r--. 1 boinc boinc         0 Nov 20 16:25 boinc_lockfile
[2025-11-20 16:29:56] -rw-r--r--. 1 boinc boinc      2785 Nov 20 16:25 pandaJob.out
[2025-11-20 16:29:56] -rw-------. 1 boinc boinc    989817 Nov 20 16:25 agis_schedconf.cvmfs.json
[2025-11-20 16:29:56] -rw-------. 1 boinc boinc   1526164 Nov 20 16:25 agis_ddmendpoints.agis.ALL.json
[2025-11-20 16:29:56] drwx------. 5 boinc boinc      4096 Nov 20 16:25 pilot3
[2025-11-20 16:29:56] -rw-r--r--. 1 boinc boinc       523 Nov 20 16:26 boinc_task_state.xml
[2025-11-20 16:29:56] -rw-------. 1 boinc boinc       953 Nov 20 16:27 memory_monitor_summary.json
[2025-11-20 16:29:56] -rw-------. 1 boinc boinc     47789 Nov 20 16:27 log.47523449._008177.job.log.tgz.1
[2025-11-20 16:29:56] -rw-------. 1 boinc boinc        95 Nov 20 16:28 pilot_heartbeat.json
[2025-11-20 16:29:56] -rw-------. 1 boinc boinc     10327 Nov 20 16:29 heartbeat.json
[2025-11-20 16:29:56] -rw-r--r--. 1 boinc boinc      8192 Nov 20 16:29 boinc_mmap_file
[2025-11-20 16:29:56] -rw-r--r--. 1 boinc boinc        23 Nov 20 16:29 wrapper_checkpoint.txt
[2025-11-20 16:29:56] -rw-------. 1 boinc boinc      4823 Nov 20 16:29 pilotlog.txt
[2025-11-20 16:29:56] -rw-------. 1 boinc boinc     92347 Nov 20 16:29 log.47523449._008177.job.log.1
[2025-11-20 16:29:56] -rw-------. 1 boinc boinc       186 Nov 20 16:29 output.list
[2025-11-20 16:29:56] -rw-r--r--. 1 boinc boinc       620 Nov 20 16:29 runtime_log
[2025-11-20 16:29:56] -rw-------. 1 boinc boinc    163840 Nov 20 16:29 result.tar.gz
[2025-11-20 16:29:56] -rw-r--r--. 1 boinc boinc      8636 Nov 20 16:29 runtime_log.err
[2025-11-20 16:29:56] -rw-------. 1 boinc boinc       645 Nov 20 16:29 8v0KDmOEPg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmXzGKDm9qetym.diag
[2025-11-20 16:29:56] -rw-r--r--. 1 boinc boinc     22394 Nov 20 16:29 stderr.txt
[2025-11-20 16:29:56] No HITS result produced
[2025-11-20 16:29:56]  *** Contents of shared directory: ***
[2025-11-20 16:29:56] total 402572
[2025-11-20 16:29:56] -rw-r--r--. 2 boinc boinc 411455056 Nov 20 16:25 ATLAS.root_0
[2025-11-20 16:29:56] -rw-r--r--. 2 boinc boinc     15847 Nov 20 16:25 start_atlas.sh
[2025-11-20 16:29:56] -rw-r--r--. 2 boinc boinc    590095 Nov 20 16:25 input.tar.gz
[2025-11-20 16:29:56] -rw-------. 1 boinc boinc    163840 Nov 20 16:29 result.tar.gz
16:29:57 (4135509): run_atlas exited; CPU time 41.990788
16:29:57 (4135509): called boinc_finish(0)

</stderr_txt>
]]>

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