Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:04:04 (25268): wrapper (7.7.26015): starting
23:04:04 (25268): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 23:04:04] Arguments: --nthreads 8
[2025-11-23 23:04:04] Threads: 8
[2025-11-23 23:04:04] Checking for CVMFS
[2025-11-23 23:04:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 23:04:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 23:04:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 23:04:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 23:04:06] 2.11.2.0 17816 186607 136752 153221 2 85 15498041 25165825 4632 130560 3 65231866 99.881 32040947 2789 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-23 23:04:06] CVMFS is ok
[2025-11-23 23:04:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 23:04:06] Checking for apptainer binary...
[2025-11-23 23:04:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 23:04:06] Running /usr/bin/apptainer --version
[2025-11-23 23:04:06] apptainer version 1.3.2-1.el7
[2025-11-23 23:04:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 23:04:10] cg-vwn410.simple-grid.lan
[2025-11-23 23:04:10] apptainer works
[2025-11-23 23:04:10] Set ATHENA_PROC_NUMBER=8
[2025-11-23 23:04:10] Set ATHENA_CORE_NUMBER=8
[2025-11-23 23:04:10] Starting ATLAS job with PandaID=6893864536
[2025-11-23 23:04:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 23:15:14]  *** The last 200 lines of the pilot log: ***
[2025-11-24 23:15:14] 2025-11-24 22:14:20,251 | INFO     | monitor loop #5822: job 0:6893864536 is in state 'finished'
[2025-11-24 23:15:14] 2025-11-24 22:14:20,251 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:15:14] 2025-11-24 22:14:21,036 | INFO     | time since job start (86809s) is within the limit (172800.0s)
[2025-11-24 23:15:14] 2025-11-24 22:14:22,763 | INFO     | monitor loop #5823: job 0:6893864536 is in state 'finished'
[2025-11-24 23:15:14] 2025-11-24 22:14:22,763 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:15:14] 2025-11-24 22:14:23,043 | INFO     | time since job start (86811s) is within the limit (172800.0s)
[2025-11-24 23:15:14] 2025-11-24 22:14:25,050 | INFO     | time since job start (86813s) is within the limit (172800.0s)
[2025-11-24 23:15:14] 2025-11-24 22:14:25,276 | INFO     | monitor loop #5824: job 0:6893864536 is in state 'finished'
[2025-11-24 23:15:14] 2025-11-24 22:14:25,276 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:15:14] 2025-11-24 22:14:27,057 | INFO     | time since job start (86815s) is within the limit (172800.0s)
[2025-11-24 23:15:14] 2025-11-24 22:14:27,787 | INFO     | monitor loop #5825: job 0:6893864536 is in state 'finished'
[2025-11-24 23:15:14] 2025-11-24 22:14:27,787 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:15:14] 2025-11-24 22:14:29,068 | INFO     | time since job start (86817s) is within the limit (172800.0s)
[2025-11-24 23:15:14] 2025-11-24 22:14:30,104 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 23:15:14] 2025-11-24 22:14:30,105 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 23:15:14] 2025-11-24 22:14:30,107 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6893864536/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 23:15:14] 2025-11-24 22:14:30,108 | INFO     | extracted standard info from prmon json
[2025-11-24 23:15:14] 2025-11-24 22:14:30,109 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 23:15:14] 2025-11-24 22:14:30,109 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 23:15:14] 2025-11-24 22:14:30,136 | INFO     | fitting pss+swap vs Time
[2025-11-24 23:15:14] 2025-11-24 22:14:30,138 | INFO     | sum of square deviations: 874786282773.9143
[2025-11-24 23:15:14] 2025-11-24 22:14:30,199 | INFO     | sum of deviations: 3197419363060.175
[2025-11-24 23:15:14] 2025-11-24 22:14:30,200 | INFO     | mean x: 1763979268.168436
[2025-11-24 23:15:14] 2025-11-24 22:14:30,200 | INFO     | mean y: 2828861.4614295824
[2025-11-24 23:15:14] 2025-11-24 22:14:30,200 | INFO     | intersect: -6444667606.125684
[2025-11-24 23:15:14] 2025-11-24 22:14:30,202 | INFO     | chi2: 29.34501066043343
[2025-11-24 23:15:14] 2025-11-24 22:14:30,204 | INFO     | sum of square deviations: 865533068632.0612
[2025-11-24 23:15:14] 2025-11-24 22:14:30,255 | INFO     | sum of deviations: 3654497294983.635
[2025-11-24 23:15:14] 2025-11-24 22:14:30,255 | INFO     | mean x: 1763979115.6725852
[2025-11-24 23:15:14] 2025-11-24 22:14:30,256 | INFO     | mean y: 2836393.125
[2025-11-24 23:15:14] 2025-11-24 22:14:30,256 | INFO     | intersect: -7445125031.181345
[2025-11-24 23:15:14] 2025-11-24 22:14:30,258 | INFO     | chi2: 26.158654494579437
[2025-11-24 23:15:14] 2025-11-24 22:14:30,258 | INFO     | current chi2=26.158654494579437 (change=10.858255267735284 %)
[2025-11-24 23:15:14] 2025-11-24 22:14:30,258 | INFO     | right removable region: 1407
[2025-11-24 23:15:14] 2025-11-24 22:14:30,260 | INFO     | sum of square deviations: 865532061522.061
[2025-11-24 23:15:14] 2025-11-24 22:14:30,305 | INFO     | monitor loop #5826: job 0:6893864536 is in state 'finished'
[2025-11-24 23:15:14] 2025-11-24 22:14:30,326 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:15:14] 2025-11-24 22:14:30,328 | INFO     | sum of deviations: 2607038258509.0527
[2025-11-24 23:15:14] 2025-11-24 22:14:30,328 | INFO     | mean x: 1763979420.6725852
[2025-11-24 23:15:14] 2025-11-24 22:14:30,329 | INFO     | mean y: 2838589.913352273
[2025-11-24 23:15:14] 2025-11-24 22:14:30,329 | INFO     | intersect: -5310380921.365087
[2025-11-24 23:15:14] 2025-11-24 22:14:30,330 | INFO     | chi2: 24.637926243808884
[2025-11-24 23:15:14] 2025-11-24 22:14:30,331 | INFO     | current chi2=24.637926243808884 (change=16.040493121957592 %)
[2025-11-24 23:15:14] 2025-11-24 22:14:30,331 | INFO     | left removable region: 10
[2025-11-24 23:15:14] 2025-11-24 22:14:30,333 | INFO     | sum of square deviations: 845404179243.8182
[2025-11-24 23:15:14] 2025-11-24 22:14:30,393 | INFO     | sum of deviations: 2670925746322.637
[2025-11-24 23:15:14] 2025-11-24 22:14:30,393 | INFO     | mean x: 1763979390.1818182
[2025-11-24 23:15:14] 2025-11-24 22:14:30,393 | INFO     | mean y: 2856115.985683608
[2025-11-24 23:15:14] 2025-11-24 22:14:30,393 | INFO     | intersect: -5570168107.094622
[2025-11-24 23:15:14] 2025-11-24 22:14:30,395 | INFO     | chi2: 17.470425340097794
[2025-11-24 23:15:14] 2025-11-24 22:14:30,395 | INFO     | current memory leak: 3.16 B/s (using 1397 data points, chi2=17.47)
[2025-11-24 23:15:14] 2025-11-24 22:14:30,397 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-24 23:15:14] 2025-11-24 22:14:30,397 | INFO     | ..............................
[2025-11-24 23:15:14] 2025-11-24 22:14:30,397 | INFO     | . Timing measurements:
[2025-11-24 23:15:14] 2025-11-24 22:14:30,397 | INFO     | . get job = 0 s
[2025-11-24 23:15:14] 2025-11-24 22:14:30,398 | INFO     | . initial setup = 7 s
[2025-11-24 23:15:14] 2025-11-24 22:14:30,398 | INFO     | . payload setup = 173 s
[2025-11-24 23:15:14] 2025-11-24 22:14:30,398 | INFO     | . stage-in = 0 s
[2025-11-24 23:15:14] 2025-11-24 22:14:30,398 | INFO     | . payload execution = 86330 s
[2025-11-24 23:15:14] 2025-11-24 22:14:30,398 | INFO     | . stage-out = 5 s
[2025-11-24 23:15:14] 2025-11-24 22:14:30,398 | INFO     | . log creation = 1 s
[2025-11-24 23:15:14] 2025-11-24 22:14:30,398 | INFO     | ..............................
[2025-11-24 23:15:14] 2025-11-24 22:14:30,526 | INFO     | 
[2025-11-24 23:15:14] 2025-11-24 22:14:30,526 | INFO     | job summary report
[2025-11-24 23:15:14] 2025-11-24 22:14:30,526 | INFO     | --------------------------------------------------
[2025-11-24 23:15:14] 2025-11-24 22:14:30,526 | INFO     | PanDA job id: 6893864536
[2025-11-24 23:15:14] 2025-11-24 22:14:30,526 | INFO     | task id: 47523449
[2025-11-24 23:15:14] 2025-11-24 22:14:30,526 | INFO     | errors: (none)
[2025-11-24 23:15:14] 2025-11-24 22:14:30,527 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 23:15:14] 2025-11-24 22:14:30,527 | INFO     | pilot state: finished 
[2025-11-24 23:15:14] 2025-11-24 22:14:30,527 | INFO     | transexitcode: 0
[2025-11-24 23:15:14] 2025-11-24 22:14:30,527 | INFO     | exeerrorcode: 0
[2025-11-24 23:15:14] 2025-11-24 22:14:30,527 | INFO     | exeerrordiag: 
[2025-11-24 23:15:14] 2025-11-24 22:14:30,527 | INFO     | exitcode: 0
[2025-11-24 23:15:14] 2025-11-24 22:14:30,527 | INFO     | exitmsg: OK
[2025-11-24 23:15:14] 2025-11-24 22:14:30,527 | INFO     | cpuconsumptiontime: 347105 s
[2025-11-24 23:15:14] 2025-11-24 22:14:30,527 | INFO     | nevents: 1000
[2025-11-24 23:15:14] 2025-11-24 22:14:30,527 | INFO     | neventsw: 0
[2025-11-24 23:15:14] 2025-11-24 22:14:30,528 | INFO     | pid: 3199
[2025-11-24 23:15:14] 2025-11-24 22:14:30,528 | INFO     | pgrp: 3199
[2025-11-24 23:15:14] 2025-11-24 22:14:30,528 | INFO     | corecount: 8
[2025-11-24 23:15:14] 2025-11-24 22:14:30,528 | INFO     | event service: False
[2025-11-24 23:15:14] 2025-11-24 22:14:30,528 | INFO     | sizes: {0: 2298580, 1: 2298835, 12: 2298835, 23: 2298863, 34: 2298891, 45: 2298919, 55: 2299075, 66: 2299103, 77: 2299131, 88: 2299187, 98: 2299785, 86505: 2359440
[2025-11-24 23:15:14] 2025-11-24 22:14:30,528 | INFO     | --------------------------------------------------
[2025-11-24 23:15:14] 2025-11-24 22:14:30,528 | INFO     | 
[2025-11-24 23:15:14] 2025-11-24 22:14:30,528 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-24 23:15:14] 2025-11-24 22:14:31,076 | INFO     | time since job start (86819s) is within the limit (172800.0s)
[2025-11-24 23:15:14] 2025-11-24 22:14:31,099 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 23:15:14] 2025-11-24 22:14:31,099 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 23:15:14] 2025-11-24 22:14:31,099 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 23:15:14] 2025-11-24 22:14:31,099 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 23:15:14] 2025-11-24 22:14:31,099 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 23:15:14] 2025-11-24 22:14:31,100 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 23:15:14] 2025-11-24 22:14:31,100 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 23:15:14] 2025-11-24 22:14:31,100 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 23:15:14] 2025-11-24 22:14:31,100 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 23:15:14] 2025-11-24 22:14:31,100 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 23:15:14] 2025-11-24 22:14:31,100 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 23:15:14] 2025-11-24 22:14:31,100 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 23:15:14] 2025-11-24 22:14:31,100 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 23:15:14] 2025-11-24 22:14:31,101 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 23:15:14] 2025-11-24 22:14:31,101 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 23:15:14] 2025-11-24 22:14:31,101 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 23:15:14] 2025-11-24 22:14:31,101 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 23:15:14] 2025-11-24 22:14:31,101 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 23:15:14] 2025-11-24 22:14:31,101 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 23:15:14] 2025-11-24 22:14:31,101 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 23:15:14] 2025-11-24 22:14:31,101 | INFO     | job 6893864536 has completed (purged errors)
[2025-11-24 23:15:14] 2025-11-24 22:14:31,102 | INFO     | overall cleanup function is called
[2025-11-24 23:15:14] 2025-11-24 22:14:32,121 | INFO     | --- collectZombieJob: --- 10, [3199]
[2025-11-24 23:15:14] 2025-11-24 22:14:32,121 | INFO     | zombie collector waiting for pid 3199
[2025-11-24 23:15:14] 2025-11-24 22:14:32,121 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 23:15:14] 2025-11-24 22:14:32,121 | INFO     | collected zombie processes
[2025-11-24 23:15:14] 2025-11-24 22:14:32,122 | INFO     | will attempt to kill all subprocesses of pid=3199
[2025-11-24 23:15:14] 2025-11-24 22:14:32,192 | INFO     | process IDs to be killed: [3199] (in reverse order)
[2025-11-24 23:15:14] 2025-11-24 22:14:33,305 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 23:15:14] 2025-11-24 22:14:33,305 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 23:15:14] 2025-11-24 22:14:33,307 | INFO     | did not find any defunct processes belonging to 3199
[2025-11-24 23:15:14] 2025-11-24 22:14:33,309 | INFO     | did not find any defunct processes belonging to 3199
[2025-11-24 23:15:14] 2025-11-24 22:14:33,351 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 23:15:14] 2025-11-24 22:14:33,352 | INFO     | ready for new job
[2025-11-24 23:15:14] 2025-11-24 22:14:33,352 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 23:15:14] 2025-11-24 22:14:33,358 | INFO     | ***************************************
[2025-11-24 23:15:14] 2025-11-24 22:14:33,358 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 23:15:14] 2025-11-24 22:14:33,358 | INFO     | ***************************************
[2025-11-24 23:15:14] 2025-11-24 22:14:33,358 | INFO     | 
[2025-11-24 23:15:14] 2025-11-24 22:14:33,359 | INFO     | pilot is running in a VM
[2025-11-24 23:15:14] 2025-11-24 22:14:33,359 | INFO     | architecture information:
[2025-11-24 23:15:14] 2025-11-24 22:14:33,369 | INFO     | executing command: cat /etc/os-release
[2025-11-24 23:15:14] 2025-11-24 22:14:33,626 | INFO     | cat /etc/os-release:
[2025-11-24 23:15:14] NAME="CentOS Linux"
[2025-11-24 23:15:14] VERSION="7 (Core)"
[2025-11-24 23:15:14] ID="centos"
[2025-11-24 23:15:14] ID_LIKE="rhel fedora"
[2025-11-24 23:15:14] VERSION_ID="7"
[2025-11-24 23:15:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 23:15:14] ANSI_COLOR="0;31"
[2025-11-24 23:15:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 23:15:14] HOME_URL="https://www.centos.org/"
[2025-11-24 23:15:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 23:15:14] 
[2025-11-24 23:15:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 23:15:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 23:15:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 23:15:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 23:15:14] 
[2025-11-24 23:15:14] 2025-11-24 22:14:33,627 | INFO     | ***************************************
[2025-11-24 23:15:14] 2025-11-24 22:14:34,130 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-24 23:15:14] 2025-11-24 22:14:34,437 | INFO     | sufficient remaining disk space (492903071744 B)
[2025-11-24 23:15:14] 2025-11-24 22:14:34,437 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 23:15:14] 2025-11-24 22:14:34,437 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 23:15:14] 2025-11-24 22:14:34,437 | INFO     | update_server=False
[2025-11-24 23:15:14] 2025-11-24 22:14:34,437 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 23:15:14] 2025-11-24 22:14:34,438 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 23:15:14] 2025-11-24 22:14:34,448 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:15:14] 2025-11-24 22:14:34,448 | INFO     | aborting loop
[2025-11-24 23:15:14] 2025-11-24 22:14:34,564 | INFO     | all job control threads have been joined
[2025-11-24 23:15:14] 2025-11-24 22:14:34,642 | INFO     | all data control threads have been joined
[2025-11-24 23:15:14] 2025-11-24 22:14:34,745 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 23:15:14] 2025-11-24 22:14:34,924 | INFO     | all payload control threads have been joined
[2025-11-24 23:15:14] 2025-11-24 22:14:35,443 | INFO     | [job] retrieve thread has finished
[2025-11-24 23:15:14] 2025-11-24 22:14:35,450 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 23:15:14] 2025-11-24 22:14:35,454 | INFO     | [job] job monitor thread has finished
[2025-11-24 23:15:14] 2025-11-24 22:14:35,541 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:15:14] 2025-11-24 22:14:35,570 | INFO     | [job] control thread has finished
[2025-11-24 23:15:14] 2025-11-24 22:14:35,648 | INFO     | [data] control thread has finished
[2025-11-24 23:15:14] 2025-11-24 22:14:35,670 | INFO     | [payload] validate_post thread has finished
[2025-11-24 23:15:14] 2025-11-24 22:14:35,830 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 23:15:14] 2025-11-24 22:14:35,930 | INFO     | [payload] control thread has finished
[2025-11-24 23:15:14] 2025-11-24 22:14:36,088 | INFO     | [job] validate thread has finished
[2025-11-24 23:15:14] 2025-11-24 22:14:36,361 | INFO     | [data] copytool_in thread has finished
[2025-11-24 23:15:14] 2025-11-24 22:14:36,547 | INFO     | [job] queue monitor thread has finished
[2025-11-24 23:15:14] 2025-11-24 22:14:36,627 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 23:15:14] 2025-11-24 22:14:36,724 | INFO     | [payload] failed_post thread has finished
[2025-11-24 23:15:14] 2025-11-24 22:14:36,752 | INFO     | [data] copytool_out thread has finished
[2025-11-24 23:15:14] 2025-11-24 22:14:36,804 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 23:15:14] 2025-11-24 22:14:38,447 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 23:15:14] 2025-11-24 22:15:03,128 | INFO     | [monitor] cgroup control has ended
[2025-11-24 23:15:14] 2025-11-24 22:15:04,218 | INFO     | PID=29020 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 23:15:14] 2025-11-24 22:15:04,218 | INFO     | .. there are 2 such processes running
[2025-11-24 23:15:14] 2025-11-24 22:15:04,219 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 23:15:14] 2025-11-24 22:15:04,219 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 23:15:14] 2025-11-24 22:15:04,219 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 23:15:14] 2025-11-24 22:15:04,684 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140341998888768)>', '<ExcThread(monitor, started 140341319550720)>']
[2025-11-24 23:15:14] 2025-11-24 22:15:05,225 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 23:15:14] 2025-11-24 22:15:05,225 | INFO     | [monitor] control thread has ended
[2025-11-24 23:15:14] 2025-11-24 22:15:09,710 | INFO     | all workflow threads have been joined
[2025-11-24 23:15:14] 2025-11-24 22:15:09,710 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 23:15:14] 2025-11-24 22:15:09,711 | INFO     | traces error code: 0
[2025-11-24 23:15:14] 2025-11-24 22:15:09,711 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 23:15:14] 2025-11-24 22:15:10,146 [wrapper] ==== pilot stdout END ====
[2025-11-24 23:15:14] 2025-11-24 22:15:10,242 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 23:15:14] 2025-11-24 22:15:10,394 [wrapper] pilotpid: 29020
[2025-11-24 23:15:14] 2025-11-24 22:15:10,513 [wrapper] Pilot exit status: 0
[2025-11-24 23:15:14] 2025-11-24 22:15:10,863 [wrapper] pandaids: 6893864536
[2025-11-24 23:15:14] 2025-11-24 22:15:11,595 [wrapper] cleanup supervisor_pilot 15173 29021
[2025-11-24 23:15:14] 2025-11-24 22:15:11,675 [wrapper] Test setup, not cleaning
[2025-11-24 23:15:14] 2025-11-24 22:15:11,711 [wrapper] apfmon messages muted
[2025-11-24 23:15:14] 2025-11-24 22:15:11,781 [wrapper] ==== wrapper stdout END ====
[2025-11-24 23:15:14] 2025-11-24 22:15:11,881 [wrapper] ==== wrapper stderr END ====
[2025-11-24 23:15:14]  *** Error codes and diagnostics ***
[2025-11-24 23:15:14]     "exeErrorCode": 0,
[2025-11-24 23:15:14]     "exeErrorDiag": "",
[2025-11-24 23:15:14]     "pilotErrorCode": 0,
[2025-11-24 23:15:14]     "pilotErrorDiag": "",
[2025-11-24 23:15:14]  *** Listing of results directory ***
[2025-11-24 23:15:14] total 1339456
[2025-11-24 23:15:14] -rw-r--r--. 1 boinc boinc    576529 Nov 20 15:06 pilot3.tar.gz
[2025-11-24 23:15:14] -rwx------. 1 boinc boinc     36292 Nov 20 15:26 runpilot2-wrapper.sh
[2025-11-24 23:15:14] -rw-r--r--. 1 boinc boinc      5112 Nov 20 15:26 queuedata.json
[2025-11-24 23:15:14] -rw-r--r--. 1 boinc boinc       100 Nov 23 23:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 23:15:14] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 23:04 run_atlas
[2025-11-24 23:15:14] -rw-r--r--. 1 boinc boinc       105 Nov 23 23:04 job.xml
[2025-11-24 23:15:14] -rw-r--r--. 2 boinc boinc 408487146 Nov 23 23:04 EVNT.47493127._000612.pool.root.1
[2025-11-24 23:15:14] -rw-r--r--. 1 boinc boinc      6392 Nov 23 23:04 init_data.xml
[2025-11-24 23:15:14] -rw-r--r--. 2 boinc boinc     15847 Nov 23 23:04 start_atlas.sh
[2025-11-24 23:15:14] drwxrwx--x. 2 boinc boinc        68 Nov 23 23:04 shared
[2025-11-24 23:15:14] -rw-r--r--. 2 boinc boinc    590096 Nov 23 23:04 input.tar.gz
[2025-11-24 23:15:14] -rw-r--r--. 1 boinc boinc         0 Nov 23 23:04 boinc_lockfile
[2025-11-24 23:15:14] -rw-r--r--. 1 boinc boinc      2786 Nov 23 23:04 pandaJob.out
[2025-11-24 23:15:14] -rw-------. 1 boinc boinc    989786 Nov 23 23:07 agis_schedconf.cvmfs.json
[2025-11-24 23:15:14] drwx------. 5 boinc boinc      4096 Nov 23 23:07 pilot3
[2025-11-24 23:15:14] -rw-r--r--. 1 boinc boinc       533 Nov 24 22:45 boinc_task_state.xml
[2025-11-24 23:15:14] -rw-------. 1 boinc boinc 931122427 Nov 24 23:11 HITS.47523449._006120.pool.root.1
[2025-11-24 23:15:14] -rw-------. 1 boinc boinc      1032 Nov 24 23:12 memory_monitor_summary.json
[2025-11-24 23:15:14] -rw-------. 1 boinc boinc   1516227 Nov 24 23:12 agis_ddmendpoints.agis.ALL.json
[2025-11-24 23:15:14] -rw-------. 1 boinc boinc   2504301 Nov 24 23:12 log.47523449._006120.job.log.tgz.1
[2025-11-24 23:15:14] -rw-------. 1 boinc boinc      7959 Nov 24 23:14 heartbeat.json
[2025-11-24 23:15:14] -rw-r--r--. 1 boinc boinc      8192 Nov 24 23:14 boinc_mmap_file
[2025-11-24 23:15:14] -rw-r--r--. 1 boinc boinc        29 Nov 24 23:14 wrapper_checkpoint.txt
[2025-11-24 23:15:14] -rw-------. 1 boinc boinc        95 Nov 24 23:15 pilot_heartbeat.json
[2025-11-24 23:15:14] -rw-------. 1 boinc boinc      4884 Nov 24 23:15 pilotlog.txt
[2025-11-24 23:15:14] -rw-------. 1 boinc boinc  11542094 Nov 24 23:15 log.47523449._006120.job.log.1
[2025-11-24 23:15:14] -rw-------. 1 boinc boinc       353 Nov 24 23:15 output.list
[2025-11-24 23:15:14] -rw-r--r--. 1 boinc boinc       620 Nov 24 23:15 runtime_log
[2025-11-24 23:15:14] -rw-------. 1 boinc boinc  14069760 Nov 24 23:15 result.tar.gz
[2025-11-24 23:15:14] -rw-r--r--. 1 boinc boinc      8817 Nov 24 23:15 runtime_log.err
[2025-11-24 23:15:14] -rw-------. 1 boinc boinc       662 Nov 24 23:15 4VrLDm2mKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmR4HKDmWDCIym.diag
[2025-11-24 23:15:14] -rw-r--r--. 1 boinc boinc     21425 Nov 24 23:15 stderr.txt
[2025-11-24 23:15:14] HITS file was successfully produced:
[2025-11-24 23:15:14] -rw-------. 1 boinc boinc 931122427 Nov 24 23:11 shared/HITS.pool.root.1
[2025-11-24 23:15:14]  *** Contents of shared directory: ***
[2025-11-24 23:15:15] total 1322552
[2025-11-24 23:15:15] -rw-r--r--. 2 boinc boinc 408487146 Nov 23 23:04 ATLAS.root_0
[2025-11-24 23:15:15] -rw-r--r--. 2 boinc boinc     15847 Nov 23 23:04 start_atlas.sh
[2025-11-24 23:15:15] -rw-r--r--. 2 boinc boinc    590096 Nov 23 23:04 input.tar.gz
[2025-11-24 23:15:15] -rw-------. 1 boinc boinc 931122427 Nov 24 23:11 HITS.pool.root.1
[2025-11-24 23:15:15] -rw-------. 1 boinc boinc  14069760 Nov 24 23:15 result.tar.gz
23:15:16 (25268): run_atlas exited; CPU time 347388.395652
23:15:16 (25268): called boinc_finish(0)

</stderr_txt>
]]>

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