Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:55:52 (1966): wrapper (7.7.26015): starting
21:55:52 (1966): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 21:55:52] Arguments: --nthreads 8
[2025-11-23 21:55:52] Threads: 8
[2025-11-23 21:55:52] Checking for CVMFS
[2025-11-23 21:55:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 21:55:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 21:55:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 21:55:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 21:55:55] 2.11.2.0 24996 281418 143368 153220 2 236 12598729 25165825 4583 130560 3 135539736 99.890 71651480 2985 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-23 21:55:55] CVMFS is ok
[2025-11-23 21:55:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 21:55:55] Checking for apptainer binary...
[2025-11-23 21:55:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 21:55:55] Running /usr/bin/apptainer --version
[2025-11-23 21:55:55] apptainer version 1.3.2-1.el7
[2025-11-23 21:55:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 21:56:00] cg-vwn259.simple-grid.lan
[2025-11-23 21:56:00] apptainer works
[2025-11-23 21:56:00] Set ATHENA_PROC_NUMBER=8
[2025-11-23 21:56:00] Set ATHENA_CORE_NUMBER=8
[2025-11-23 21:56:00] Starting ATLAS job with PandaID=6893852528
[2025-11-23 21:56:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/23 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 19:43:52]  *** The last 200 lines of the pilot log: ***
[2025-11-24 19:43:52] 2025-11-24 18:42:59,380 | INFO     | time since job start (78214s) is within the limit (172800.0s)
[2025-11-24 19:43:52] 2025-11-24 18:43:00,685 | INFO     | monitor loop #5256: job 0:6893852528 is in state 'finished'
[2025-11-24 19:43:52] 2025-11-24 18:43:00,685 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 19:43:52] 2025-11-24 18:43:01,388 | INFO     | time since job start (78216s) is within the limit (172800.0s)
[2025-11-24 19:43:52] 2025-11-24 18:43:03,194 | INFO     | monitor loop #5257: job 0:6893852528 is in state 'finished'
[2025-11-24 19:43:52] 2025-11-24 18:43:03,194 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 19:43:52] 2025-11-24 18:43:03,403 | INFO     | time since job start (78218s) is within the limit (172800.0s)
[2025-11-24 19:43:52] 2025-11-24 18:43:05,413 | INFO     | time since job start (78220s) is within the limit (172800.0s)
[2025-11-24 19:43:52] 2025-11-24 18:43:05,708 | INFO     | monitor loop #5258: job 0:6893852528 is in state 'finished'
[2025-11-24 19:43:52] 2025-11-24 18:43:05,708 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 19:43:52] 2025-11-24 18:43:07,424 | INFO     | time since job start (78222s) is within the limit (172800.0s)
[2025-11-24 19:43:52] 2025-11-24 18:43:08,214 | INFO     | monitor loop #5259: job 0:6893852528 is in state 'finished'
[2025-11-24 19:43:52] 2025-11-24 18:43:08,214 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 19:43:52] 2025-11-24 18:43:08,568 | INFO     | PID=5735 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 19:43:52] 2025-11-24 18:43:08,568 | INFO     | .. there are 2 such processes running
[2025-11-24 19:43:52] 2025-11-24 18:43:09,576 | INFO     | time since job start (78224s) is within the limit (172800.0s)
[2025-11-24 19:43:52] 2025-11-24 18:43:09,784 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 19:43:52] 2025-11-24 18:43:09,785 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 19:43:52] 2025-11-24 18:43:09,787 | INFO     | using path: /var/lib/boinc/slots/23/PanDA_Pilot-6893852528/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 19:43:52] 2025-11-24 18:43:09,788 | INFO     | extracted standard info from prmon json
[2025-11-24 19:43:52] 2025-11-24 18:43:09,788 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 19:43:52] 2025-11-24 18:43:09,788 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 19:43:52] 2025-11-24 18:43:09,814 | INFO     | fitting pss+swap vs Time
[2025-11-24 19:43:52] 2025-11-24 18:43:09,817 | INFO     | sum of square deviations: 639673988438.8223
[2025-11-24 19:43:52] 2025-11-24 18:43:09,892 | INFO     | sum of deviations: 1776200242473.6853
[2025-11-24 19:43:52] 2025-11-24 18:43:09,892 | INFO     | mean x: 1763970847.1461115
[2025-11-24 19:43:52] 2025-11-24 18:43:09,892 | INFO     | mean y: 2840141.1791044776
[2025-11-24 19:43:52] 2025-11-24 18:43:09,892 | INFO     | intersect: -4895225909.723148
[2025-11-24 19:43:52] 2025-11-24 18:43:09,894 | INFO     | chi2: 18.50531699084282
[2025-11-24 19:43:52] 2025-11-24 18:43:09,902 | INFO     | sum of square deviations: 632166515912.2295
[2025-11-24 19:43:52] 2025-11-24 18:43:09,961 | INFO     | sum of deviations: 2193030728097.0142
[2025-11-24 19:43:52] 2025-11-24 18:43:09,961 | INFO     | mean x: 1763970694.650631
[2025-11-24 19:43:52] 2025-11-24 18:43:09,962 | INFO     | mean y: 2848606.295741325
[2025-11-24 19:43:52] 2025-11-24 18:43:09,962 | INFO     | intersect: -6116491535.042221
[2025-11-24 19:43:52] 2025-11-24 18:43:09,968 | INFO     | chi2: 15.218775440165059
[2025-11-24 19:43:52] 2025-11-24 18:43:09,969 | INFO     | current chi2=15.218775440165059 (change=17.759985156180118 %)
[2025-11-24 19:43:52] 2025-11-24 18:43:09,969 | INFO     | right removable region: 1267
[2025-11-24 19:43:52] 2025-11-24 18:43:09,971 | INFO     | sum of square deviations: 632165625922.2297
[2025-11-24 19:43:52] 2025-11-24 18:43:10,043 | INFO     | sum of deviations: 1397235298993.3367
[2025-11-24 19:43:52] 2025-11-24 18:43:10,044 | INFO     | mean x: 1763970999.650631
[2025-11-24 19:43:52] 2025-11-24 18:43:10,044 | INFO     | mean y: 2847834.393533123
[2025-11-24 19:43:52] 2025-11-24 18:43:10,044 | INFO     | intersect: -3895944580.2000985
[2025-11-24 19:43:52] 2025-11-24 18:43:10,046 | INFO     | chi2: 16.1784320339686
[2025-11-24 19:43:52] 2025-11-24 18:43:10,046 | INFO     | current chi2=16.1784320339686 (change=12.57414265330152 %)
[2025-11-24 19:43:52] 2025-11-24 18:43:10,046 | INFO     | left removable region: 10
[2025-11-24 19:43:52] 2025-11-24 18:43:10,048 | INFO     | sum of square deviations: 615856110200.75
[2025-11-24 19:43:52] 2025-11-24 18:43:10,096 | INFO     | sum of deviations: 1801610529912.5562
[2025-11-24 19:43:52] 2025-11-24 18:43:10,096 | INFO     | mean x: 1763970969.1551313
[2025-11-24 19:43:52] 2025-11-24 18:43:10,096 | INFO     | mean y: 2860193.417661098
[2025-11-24 19:43:52] 2025-11-24 18:43:10,097 | INFO     | intersect: -5157417702.427224
[2025-11-24 19:43:52] 2025-11-24 18:43:10,098 | INFO     | chi2: 12.098150746025405
[2025-11-24 19:43:52] 2025-11-24 18:43:10,099 | INFO     | current memory leak: 2.93 B/s (using 1257 data points, chi2=12.10)
[2025-11-24 19:43:52] 2025-11-24 18:43:10,100 | INFO     | could have reported an average CPU frequency of 1999 MHz (43 samples)
[2025-11-24 19:43:52] 2025-11-24 18:43:10,100 | INFO     | ..............................
[2025-11-24 19:43:52] 2025-11-24 18:43:10,100 | INFO     | . Timing measurements:
[2025-11-24 19:43:52] 2025-11-24 18:43:10,100 | INFO     | . get job = 0 s
[2025-11-24 19:43:52] 2025-11-24 18:43:10,101 | INFO     | . initial setup = 8 s
[2025-11-24 19:43:52] 2025-11-24 18:43:10,101 | INFO     | . payload setup = 139 s
[2025-11-24 19:43:52] 2025-11-24 18:43:10,101 | INFO     | . stage-in = 0 s
[2025-11-24 19:43:52] 2025-11-24 18:43:10,101 | INFO     | . payload execution = 77777 s
[2025-11-24 19:43:52] 2025-11-24 18:43:10,101 | INFO     | . stage-out = 5 s
[2025-11-24 19:43:52] 2025-11-24 18:43:10,101 | INFO     | . log creation = 2 s
[2025-11-24 19:43:52] 2025-11-24 18:43:10,101 | INFO     | ..............................
[2025-11-24 19:43:52] 2025-11-24 18:43:10,593 | INFO     | 
[2025-11-24 19:43:52] 2025-11-24 18:43:10,593 | INFO     | job summary report
[2025-11-24 19:43:52] 2025-11-24 18:43:10,593 | INFO     | --------------------------------------------------
[2025-11-24 19:43:52] 2025-11-24 18:43:10,593 | INFO     | PanDA job id: 6893852528
[2025-11-24 19:43:52] 2025-11-24 18:43:10,593 | INFO     | task id: 47523449
[2025-11-24 19:43:52] 2025-11-24 18:43:10,593 | INFO     | errors: (none)
[2025-11-24 19:43:52] 2025-11-24 18:43:10,593 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 19:43:52] 2025-11-24 18:43:10,594 | INFO     | pilot state: finished 
[2025-11-24 19:43:52] 2025-11-24 18:43:10,594 | INFO     | transexitcode: 0
[2025-11-24 19:43:52] 2025-11-24 18:43:10,594 | INFO     | exeerrorcode: 0
[2025-11-24 19:43:52] 2025-11-24 18:43:10,594 | INFO     | exeerrordiag: 
[2025-11-24 19:43:52] 2025-11-24 18:43:10,594 | INFO     | exitcode: 0
[2025-11-24 19:43:52] 2025-11-24 18:43:10,594 | INFO     | exitmsg: OK
[2025-11-24 19:43:52] 2025-11-24 18:43:10,594 | INFO     | cpuconsumptiontime: 341166 s
[2025-11-24 19:43:52] 2025-11-24 18:43:10,594 | INFO     | nevents: 1000
[2025-11-24 19:43:52] 2025-11-24 18:43:10,594 | INFO     | neventsw: 0
[2025-11-24 19:43:52] 2025-11-24 18:43:10,594 | INFO     | pid: 12323
[2025-11-24 19:43:52] 2025-11-24 18:43:10,594 | INFO     | pgrp: 12323
[2025-11-24 19:43:52] 2025-11-24 18:43:10,594 | INFO     | corecount: 8
[2025-11-24 19:43:52] 2025-11-24 18:43:10,594 | INFO     | event service: False
[2025-11-24 19:43:52] 2025-11-24 18:43:10,595 | INFO     | sizes: {0: 2298530, 1: 2298785, 2: 2298785, 12: 2298813, 23: 2298841, 34: 2298869, 45: 2299025, 55: 2299053, 66: 2299081, 77: 2299109, 88: 2299165, 89: 2299735, 98
[2025-11-24 19:43:52] 2025-11-24 18:43:10,595 | INFO     | --------------------------------------------------
[2025-11-24 19:43:52] 2025-11-24 18:43:10,595 | INFO     | 
[2025-11-24 19:43:52] 2025-11-24 18:43:10,595 | INFO     | executing command: ls -lF /var/lib/boinc/slots/23
[2025-11-24 19:43:52] 2025-11-24 18:43:10,922 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 19:43:52] 2025-11-24 18:43:10,923 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 19:43:52] 2025-11-24 18:43:10,923 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 19:43:52] 2025-11-24 18:43:10,923 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 19:43:52] 2025-11-24 18:43:10,923 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 19:43:52] 2025-11-24 18:43:10,923 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 19:43:52] 2025-11-24 18:43:10,923 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 19:43:52] 2025-11-24 18:43:10,923 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 19:43:52] 2025-11-24 18:43:10,923 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 19:43:52] 2025-11-24 18:43:10,923 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 19:43:52] 2025-11-24 18:43:10,924 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 19:43:52] 2025-11-24 18:43:10,924 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 19:43:52] 2025-11-24 18:43:10,924 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 19:43:52] 2025-11-24 18:43:10,924 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 19:43:52] 2025-11-24 18:43:10,924 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 19:43:52] 2025-11-24 18:43:10,924 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 19:43:52] 2025-11-24 18:43:10,924 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 19:43:52] 2025-11-24 18:43:10,924 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 19:43:52] 2025-11-24 18:43:10,924 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 19:43:52] 2025-11-24 18:43:10,925 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 19:43:52] 2025-11-24 18:43:10,925 | INFO     | job 6893852528 has completed (purged errors)
[2025-11-24 19:43:52] 2025-11-24 18:43:10,925 | INFO     | overall cleanup function is called
[2025-11-24 19:43:52] 2025-11-24 18:43:11,949 | INFO     | --- collectZombieJob: --- 10, [12323]
[2025-11-24 19:43:52] 2025-11-24 18:43:11,949 | INFO     | zombie collector waiting for pid 12323
[2025-11-24 19:43:52] 2025-11-24 18:43:11,949 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 19:43:52] 2025-11-24 18:43:11,949 | INFO     | collected zombie processes
[2025-11-24 19:43:52] 2025-11-24 18:43:11,949 | INFO     | will attempt to kill all subprocesses of pid=12323
[2025-11-24 19:43:52] 2025-11-24 18:43:12,037 | INFO     | process IDs to be killed: [12323] (in reverse order)
[2025-11-24 19:43:52] 2025-11-24 18:43:12,899 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 19:43:52] 2025-11-24 18:43:12,900 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 19:43:52] 2025-11-24 18:43:12,905 | INFO     | did not find any defunct processes belonging to 12323
[2025-11-24 19:43:52] 2025-11-24 18:43:12,907 | INFO     | did not find any defunct processes belonging to 12323
[2025-11-24 19:43:52] 2025-11-24 18:43:12,945 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 19:43:52] 2025-11-24 18:43:12,945 | INFO     | ready for new job
[2025-11-24 19:43:52] 2025-11-24 18:43:12,946 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 19:43:52] 2025-11-24 18:43:12,951 | INFO     | ***************************************
[2025-11-24 19:43:52] 2025-11-24 18:43:12,951 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 19:43:52] 2025-11-24 18:43:12,951 | INFO     | ***************************************
[2025-11-24 19:43:52] 2025-11-24 18:43:12,951 | INFO     | 
[2025-11-24 19:43:52] 2025-11-24 18:43:12,952 | INFO     | pilot is running in a VM
[2025-11-24 19:43:52] 2025-11-24 18:43:12,952 | INFO     | architecture information:
[2025-11-24 19:43:52] 2025-11-24 18:43:12,969 | INFO     | executing command: cat /etc/os-release
[2025-11-24 19:43:52] 2025-11-24 18:43:13,278 | INFO     | cat /etc/os-release:
[2025-11-24 19:43:52] NAME="CentOS Linux"
[2025-11-24 19:43:52] VERSION="7 (Core)"
[2025-11-24 19:43:52] ID="centos"
[2025-11-24 19:43:52] ID_LIKE="rhel fedora"
[2025-11-24 19:43:52] VERSION_ID="7"
[2025-11-24 19:43:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 19:43:52] ANSI_COLOR="0;31"
[2025-11-24 19:43:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 19:43:52] HOME_URL="https://www.centos.org/"
[2025-11-24 19:43:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 19:43:52] 
[2025-11-24 19:43:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 19:43:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 19:43:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 19:43:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 19:43:52] 
[2025-11-24 19:43:52] 2025-11-24 18:43:13,279 | INFO     | ***************************************
[2025-11-24 19:43:52] 2025-11-24 18:43:13,782 | INFO     | executing command: df -mP /var/lib/boinc/slots/23
[2025-11-24 19:43:52] 2025-11-24 18:43:14,096 | INFO     | sufficient remaining disk space (493961084928 B)
[2025-11-24 19:43:52] 2025-11-24 18:43:14,096 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 19:43:52] 2025-11-24 18:43:14,096 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 19:43:52] 2025-11-24 18:43:14,097 | INFO     | update_server=False
[2025-11-24 19:43:52] 2025-11-24 18:43:14,097 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 19:43:52] 2025-11-24 18:43:14,110 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 19:43:52] 2025-11-24 18:43:14,251 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 19:43:52] 2025-11-24 18:43:14,251 | INFO     | aborting loop
[2025-11-24 19:43:52] 2025-11-24 18:43:14,982 | INFO     | all job control threads have been joined
[2025-11-24 19:43:52] 2025-11-24 18:43:15,010 | INFO     | all data control threads have been joined
[2025-11-24 19:43:52] 2025-11-24 18:43:15,103 | INFO     | [job] retrieve thread has finished
[2025-11-24 19:43:52] 2025-11-24 18:43:15,258 | INFO     | [job] job monitor thread has finished
[2025-11-24 19:43:52] 2025-11-24 18:43:15,261 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 19:43:52] 2025-11-24 18:43:15,430 | INFO     | all payload control threads have been joined
[2025-11-24 19:43:52] 2025-11-24 18:43:15,586 | INFO     | [job] validate thread has finished
[2025-11-24 19:43:52] 2025-11-24 18:43:15,816 | INFO     | [payload] failed_post thread has finished
[2025-11-24 19:43:52] 2025-11-24 18:43:15,884 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 19:43:52] 2025-11-24 18:43:15,988 | INFO     | [job] control thread has finished
[2025-11-24 19:43:52] 2025-11-24 18:43:16,016 | INFO     | [data] control thread has finished
[2025-11-24 19:43:52] 2025-11-24 18:43:16,061 | INFO     | [data] copytool_in thread has finished
[2025-11-24 19:43:52] 2025-11-24 18:43:16,117 | INFO     | [data] copytool_out thread has finished
[2025-11-24 19:43:52] 2025-11-24 18:43:16,268 | INFO     | [job] queue monitor thread has finished
[2025-11-24 19:43:52] 2025-11-24 18:43:16,365 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 19:43:52] 2025-11-24 18:43:16,384 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 19:43:52] 2025-11-24 18:43:16,436 | INFO     | [payload] control thread has finished
[2025-11-24 19:43:52] 2025-11-24 18:43:16,584 | INFO     | [payload] validate_post thread has finished
[2025-11-24 19:43:52] 2025-11-24 18:43:16,604 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 19:43:52] 2025-11-24 18:43:17,495 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 19:43:52] 2025-11-24 18:43:21,508 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 19:43:52] 2025-11-24 18:43:41,741 | INFO     | [monitor] cgroup control has ended
[2025-11-24 19:43:52] 2025-11-24 18:43:42,721 | INFO     | PID=5735 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 19:43:52] 2025-11-24 18:43:42,721 | INFO     | .. there are 2 such processes running
[2025-11-24 19:43:52] 2025-11-24 18:43:42,725 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 19:43:52] 2025-11-24 18:43:42,725 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 19:43:52] 2025-11-24 18:43:42,725 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 19:43:52] 2025-11-24 18:43:42,728 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139658151020352)>', '<ExcThread(monitor, started 139657413117696)>']
[2025-11-24 19:43:52] 2025-11-24 18:43:43,731 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 19:43:52] 2025-11-24 18:43:43,731 | INFO     | [monitor] control thread has ended
[2025-11-24 19:43:52] 2025-11-24 18:43:47,754 | INFO     | all workflow threads have been joined
[2025-11-24 19:43:52] 2025-11-24 18:43:47,754 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 19:43:52] 2025-11-24 18:43:47,754 | INFO     | traces error code: 0
[2025-11-24 19:43:52] 2025-11-24 18:43:47,754 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 19:43:52] 2025-11-24 18:43:48,175 [wrapper] ==== pilot stdout END ====
[2025-11-24 19:43:52] 2025-11-24 18:43:48,269 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 19:43:52] 2025-11-24 18:43:48,381 [wrapper] pilotpid: 5735
[2025-11-24 19:43:52] 2025-11-24 18:43:48,477 [wrapper] Pilot exit status: 0
[2025-11-24 19:43:52] 2025-11-24 18:43:48,849 [wrapper] pandaids: 6893852528
[2025-11-24 19:43:52] 2025-11-24 18:43:49,096 [wrapper] cleanup supervisor_pilot 27606 5736
[2025-11-24 19:43:52] 2025-11-24 18:43:49,142 [wrapper] Test setup, not cleaning
[2025-11-24 19:43:52] 2025-11-24 18:43:49,274 [wrapper] apfmon messages muted
[2025-11-24 19:43:52] 2025-11-24 18:43:49,388 [wrapper] ==== wrapper stdout END ====
[2025-11-24 19:43:52] 2025-11-24 18:43:49,494 [wrapper] ==== wrapper stderr END ====
[2025-11-24 19:43:52]  *** Error codes and diagnostics ***
[2025-11-24 19:43:52]     "exeErrorCode": 0,
[2025-11-24 19:43:52]     "exeErrorDiag": "",
[2025-11-24 19:43:52]     "pilotErrorCode": 0,
[2025-11-24 19:43:52]     "pilotErrorDiag": "",
[2025-11-24 19:43:52]  *** Listing of results directory ***
[2025-11-24 19:43:52] total 1337364
[2025-11-24 19:43:52] -rw-r--r--. 1 boinc boinc    576529 Nov 20 12:54 pilot3.tar.gz
[2025-11-24 19:43:52] -rw-r--r--. 1 boinc boinc      5112 Nov 20 13:01 queuedata.json
[2025-11-24 19:43:52] -rwx------. 1 boinc boinc     36292 Nov 20 13:01 runpilot2-wrapper.sh
[2025-11-24 19:43:52] -rw-r--r--. 1 boinc boinc       100 Nov 23 21:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 19:43:52] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 21:55 run_atlas
[2025-11-24 19:43:52] -rw-r--r--. 1 boinc boinc       105 Nov 23 21:55 job.xml
[2025-11-24 19:43:52] -rw-r--r--. 2 boinc boinc 407383393 Nov 23 21:55 EVNT.47493127._000389.pool.root.1
[2025-11-24 19:43:52] -rw-r--r--. 1 boinc boinc      6392 Nov 23 21:55 init_data.xml
[2025-11-24 19:43:52] -rw-r--r--. 2 boinc boinc     15847 Nov 23 21:55 start_atlas.sh
[2025-11-24 19:43:52] drwxrwx--x. 2 boinc boinc        68 Nov 23 21:55 shared
[2025-11-24 19:43:52] -rw-r--r--. 2 boinc boinc    590103 Nov 23 21:55 input.tar.gz
[2025-11-24 19:43:52] -rw-r--r--. 1 boinc boinc         0 Nov 23 21:55 boinc_lockfile
[2025-11-24 19:43:52] -rw-r--r--. 1 boinc boinc      2785 Nov 23 21:56 pandaJob.out
[2025-11-24 19:43:52] -rw-------. 1 boinc boinc    989786 Nov 23 21:59 agis_schedconf.cvmfs.json
[2025-11-24 19:43:52] drwx------. 5 boinc boinc      4096 Nov 23 21:59 pilot3
[2025-11-24 19:43:52] -rw-r--r--. 1 boinc boinc       533 Nov 24 19:14 boinc_task_state.xml
[2025-11-24 19:43:52] -rw-------. 1 boinc boinc 932584147 Nov 24 19:39 HITS.47523449._003887.pool.root.1
[2025-11-24 19:43:52] -rw-------. 1 boinc boinc      1044 Nov 24 19:41 memory_monitor_summary.json
[2025-11-24 19:43:52] -rw-------. 1 boinc boinc   1516227 Nov 24 19:41 agis_ddmendpoints.agis.ALL.json
[2025-11-24 19:43:52] -rw-------. 1 boinc boinc   2399951 Nov 24 19:41 log.47523449._003887.job.log.tgz.1
[2025-11-24 19:43:52] -rw-------. 1 boinc boinc      7953 Nov 24 19:43 heartbeat.json
[2025-11-24 19:43:52] -rw-r--r--. 1 boinc boinc      8192 Nov 24 19:43 boinc_mmap_file
[2025-11-24 19:43:52] -rw-r--r--. 1 boinc boinc        29 Nov 24 19:43 wrapper_checkpoint.txt
[2025-11-24 19:43:52] -rw-------. 1 boinc boinc        95 Nov 24 19:43 pilot_heartbeat.json
[2025-11-24 19:43:52] -rw-------. 1 boinc boinc      4884 Nov 24 19:43 pilotlog.txt
[2025-11-24 19:43:52] -rw-------. 1 boinc boinc  10399089 Nov 24 19:43 log.47523449._003887.job.log.1
[2025-11-24 19:43:52] -rw-------. 1 boinc boinc       353 Nov 24 19:43 output.list
[2025-11-24 19:43:52] -rw-r--r--. 1 boinc boinc       620 Nov 24 19:43 runtime_log
[2025-11-24 19:43:52] -rw-------. 1 boinc boinc  12820480 Nov 24 19:43 result.tar.gz
[2025-11-24 19:43:52] -rw-r--r--. 1 boinc boinc      8833 Nov 24 19:43 runtime_log.err
[2025-11-24 19:43:52] -rw-------. 1 boinc boinc       662 Nov 24 19:43 eO7LDmSXIg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhhHKDmOrK4Ym.diag
[2025-11-24 19:43:52] -rw-r--r--. 1 boinc boinc     21500 Nov 24 19:43 stderr.txt
[2025-11-24 19:43:52] HITS file was successfully produced:
[2025-11-24 19:43:52] -rw-------. 1 boinc boinc 932584147 Nov 24 19:39 shared/HITS.pool.root.1
[2025-11-24 19:43:52]  *** Contents of shared directory: ***
[2025-11-24 19:43:52] total 1321680
[2025-11-24 19:43:52] -rw-r--r--. 2 boinc boinc 407383393 Nov 23 21:55 ATLAS.root_0
[2025-11-24 19:43:52] -rw-r--r--. 2 boinc boinc     15847 Nov 23 21:55 start_atlas.sh
[2025-11-24 19:43:52] -rw-r--r--. 2 boinc boinc    590103 Nov 23 21:55 input.tar.gz
[2025-11-24 19:43:52] -rw-------. 1 boinc boinc 932584147 Nov 24 19:39 HITS.pool.root.1
[2025-11-24 19:43:52] -rw-------. 1 boinc boinc  12820480 Nov 24 19:43 result.tar.gz
19:43:53 (1966): run_atlas exited; CPU time 341408.762616
19:43:53 (1966): called boinc_finish(0)

</stderr_txt>
]]>

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