Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:55:03 (13206): wrapper (7.7.26015): starting
03:55:03 (13206): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 03:55:04] Arguments: --nthreads 8
[2025-11-24 03:55:04] Threads: 8
[2025-11-24 03:55:04] Checking for CVMFS
[2025-11-24 03:55:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 03:55:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 03:55:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 03:55:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 03:55:06] 2.11.2.0 10662 79642 95372 153229 1 230 22101339 25165825 4358 130560 3 25468559 99.900 13450456 2192 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 03:55:06] CVMFS is ok
[2025-11-24 03:55:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 03:55:06] Checking for apptainer binary...
[2025-11-24 03:55:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 03:55:06] Running /usr/bin/apptainer --version
[2025-11-24 03:55:06] apptainer version 1.3.2-1.el7
[2025-11-24 03:55:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 03:55:08] cg-vwn346.simple-grid.lan
[2025-11-24 03:55:08] apptainer works
[2025-11-24 03:55:08] Set ATHENA_PROC_NUMBER=8
[2025-11-24 03:55:08] Set ATHENA_CORE_NUMBER=8
[2025-11-24 03:55:09] Starting ATLAS job with PandaID=6893864188
[2025-11-24 03:55:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 01:35:58]  *** The last 200 lines of the pilot log: ***
[2025-11-25 01:35:58] 2025-11-25 00:35:05,873 | INFO     | time since job start (77853s) is within the limit (172800.0s)
[2025-11-25 01:35:58] 2025-11-25 00:35:06,371 | INFO     | monitor loop #5230: job 0:6893864188 is in state 'finished'
[2025-11-25 01:35:58] 2025-11-25 00:35:06,371 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:35:58] 2025-11-25 00:35:07,880 | INFO     | time since job start (77855s) is within the limit (172800.0s)
[2025-11-25 01:35:58] 2025-11-25 00:35:08,875 | INFO     | monitor loop #5231: job 0:6893864188 is in state 'finished'
[2025-11-25 01:35:58] 2025-11-25 00:35:08,875 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:35:58] 2025-11-25 00:35:09,887 | INFO     | time since job start (77857s) is within the limit (172800.0s)
[2025-11-25 01:35:58] 2025-11-25 00:35:11,379 | INFO     | monitor loop #5232: job 0:6893864188 is in state 'finished'
[2025-11-25 01:35:58] 2025-11-25 00:35:11,379 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:35:58] 2025-11-25 00:35:11,894 | INFO     | time since job start (77859s) is within the limit (172800.0s)
[2025-11-25 01:35:58] 2025-11-25 00:35:13,889 | INFO     | monitor loop #5233: job 0:6893864188 is in state 'finished'
[2025-11-25 01:35:58] 2025-11-25 00:35:13,889 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:35:58] 2025-11-25 00:35:13,900 | INFO     | time since job start (77861s) is within the limit (172800.0s)
[2025-11-25 01:35:58] 2025-11-25 00:35:15,724 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 01:35:58] 2025-11-25 00:35:15,725 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 01:35:58] 2025-11-25 00:35:15,727 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6893864188/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 01:35:58] 2025-11-25 00:35:15,728 | INFO     | extracted standard info from prmon json
[2025-11-25 01:35:58] 2025-11-25 00:35:15,728 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 01:35:58] 2025-11-25 00:35:15,728 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 01:35:58] 2025-11-25 00:35:15,760 | INFO     | fitting pss+swap vs Time
[2025-11-25 01:35:58] 2025-11-25 00:35:15,762 | INFO     | sum of square deviations: 629187557111.172
[2025-11-25 01:35:58] 2025-11-25 00:35:15,847 | INFO     | sum of deviations: 1962875504364.407
[2025-11-25 01:35:58] 2025-11-25 00:35:15,847 | INFO     | mean x: 1763992202.5323853
[2025-11-25 01:35:58] 2025-11-25 00:35:15,847 | INFO     | mean y: 2834167.733807267
[2025-11-25 01:35:58] 2025-11-25 00:35:15,847 | INFO     | intersect: -5500289734.045522
[2025-11-25 01:35:58] 2025-11-25 00:35:15,849 | INFO     | chi2: 26.100202794990523
[2025-11-25 01:35:58] 2025-11-25 00:35:15,851 | INFO     | sum of square deviations: 621762542098.3208
[2025-11-25 01:35:58] 2025-11-25 00:35:15,907 | INFO     | time since job start (77863s) is within the limit (172800.0s)
[2025-11-25 01:35:58] 2025-11-25 00:35:15,909 | INFO     | sum of deviations: 2373588092895.539
[2025-11-25 01:35:58] 2025-11-25 00:35:15,909 | INFO     | mean x: 1763992050.036479
[2025-11-25 01:35:58] 2025-11-25 00:35:15,909 | INFO     | mean y: 2842601.597145123
[2025-11-25 01:35:58] 2025-11-25 00:35:15,909 | INFO     | intersect: -6731224252.605339
[2025-11-25 01:35:58] 2025-11-25 00:35:15,911 | INFO     | chi2: 22.866091622346108
[2025-11-25 01:35:58] 2025-11-25 00:35:15,911 | INFO     | current chi2=22.866091622346108 (change=12.39113426837107 %)
[2025-11-25 01:35:58] 2025-11-25 00:35:15,911 | INFO     | right removable region: 1260
[2025-11-25 01:35:58] 2025-11-25 00:35:15,913 | INFO     | sum of square deviations: 621761744828.3213
[2025-11-25 01:35:58] 2025-11-25 00:35:15,966 | INFO     | sum of deviations: 1422120396071.4653
[2025-11-25 01:35:58] 2025-11-25 00:35:15,967 | INFO     | mean x: 1763992355.036479
[2025-11-25 01:35:58] 2025-11-25 00:35:15,967 | INFO     | mean y: 2845272.924662966
[2025-11-25 01:35:58] 2025-11-25 00:35:15,967 | INFO     | intersect: -4031834453.638738
[2025-11-25 01:35:58] 2025-11-25 00:35:15,969 | INFO     | chi2: 21.289431425437492
[2025-11-25 01:35:58] 2025-11-25 00:35:15,969 | INFO     | current chi2=21.289431425437492 (change=18.43193099816211 %)
[2025-11-25 01:35:58] 2025-11-25 00:35:15,969 | INFO     | left removable region: 10
[2025-11-25 01:35:58] 2025-11-25 00:35:15,971 | INFO     | sum of square deviations: 605632043045.8997
[2025-11-25 01:35:58] 2025-11-25 00:35:16,020 | INFO     | sum of deviations: 1496194320900.6487
[2025-11-25 01:35:58] 2025-11-25 00:35:16,020 | INFO     | mean x: 1763992324.5456
[2025-11-25 01:35:58] 2025-11-25 00:35:16,020 | INFO     | mean y: 2864623.9008
[2025-11-25 01:35:58] 2025-11-25 00:35:16,021 | INFO     | intersect: -4355021205.296376
[2025-11-25 01:35:58] 2025-11-25 00:35:16,022 | INFO     | chi2: 14.234996129741484
[2025-11-25 01:35:58] 2025-11-25 00:35:16,022 | INFO     | current memory leak: 2.47 B/s (using 1250 data points, chi2=14.23)
[2025-11-25 01:35:58] 2025-11-25 00:35:16,024 | INFO     | could have reported an average CPU frequency of 1999 MHz (43 samples)
[2025-11-25 01:35:58] 2025-11-25 00:35:16,024 | INFO     | ..............................
[2025-11-25 01:35:58] 2025-11-25 00:35:16,024 | INFO     | . Timing measurements:
[2025-11-25 01:35:58] 2025-11-25 00:35:16,024 | INFO     | . get job = 0 s
[2025-11-25 01:35:58] 2025-11-25 00:35:16,024 | INFO     | . initial setup = 4 s
[2025-11-25 01:35:58] 2025-11-25 00:35:16,024 | INFO     | . payload setup = 178 s
[2025-11-25 01:35:58] 2025-11-25 00:35:16,024 | INFO     | . stage-in = 0 s
[2025-11-25 01:35:58] 2025-11-25 00:35:16,024 | INFO     | . payload execution = 77360 s
[2025-11-25 01:35:58] 2025-11-25 00:35:16,024 | INFO     | . stage-out = 7 s
[2025-11-25 01:35:58] 2025-11-25 00:35:16,024 | INFO     | . log creation = 2 s
[2025-11-25 01:35:58] 2025-11-25 00:35:16,024 | INFO     | ..............................
[2025-11-25 01:35:58] 2025-11-25 00:35:16,156 | INFO     | 
[2025-11-25 01:35:58] 2025-11-25 00:35:16,156 | INFO     | job summary report
[2025-11-25 01:35:58] 2025-11-25 00:35:16,156 | INFO     | --------------------------------------------------
[2025-11-25 01:35:58] 2025-11-25 00:35:16,156 | INFO     | PanDA job id: 6893864188
[2025-11-25 01:35:58] 2025-11-25 00:35:16,156 | INFO     | task id: 47523449
[2025-11-25 01:35:58] 2025-11-25 00:35:16,156 | INFO     | errors: (none)
[2025-11-25 01:35:58] 2025-11-25 00:35:16,156 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 01:35:58] 2025-11-25 00:35:16,157 | INFO     | pilot state: finished 
[2025-11-25 01:35:58] 2025-11-25 00:35:16,157 | INFO     | transexitcode: 0
[2025-11-25 01:35:58] 2025-11-25 00:35:16,157 | INFO     | exeerrorcode: 0
[2025-11-25 01:35:58] 2025-11-25 00:35:16,157 | INFO     | exeerrordiag: 
[2025-11-25 01:35:58] 2025-11-25 00:35:16,157 | INFO     | exitcode: 0
[2025-11-25 01:35:58] 2025-11-25 00:35:16,157 | INFO     | exitmsg: OK
[2025-11-25 01:35:58] 2025-11-25 00:35:16,157 | INFO     | cpuconsumptiontime: 337763 s
[2025-11-25 01:35:58] 2025-11-25 00:35:16,157 | INFO     | nevents: 1000
[2025-11-25 01:35:58] 2025-11-25 00:35:16,157 | INFO     | neventsw: 0
[2025-11-25 01:35:58] 2025-11-25 00:35:16,157 | INFO     | pid: 23577
[2025-11-25 01:35:58] 2025-11-25 00:35:16,158 | INFO     | pgrp: 23577
[2025-11-25 01:35:58] 2025-11-25 00:35:16,158 | INFO     | corecount: 8
[2025-11-25 01:35:58] 2025-11-25 00:35:16,158 | INFO     | event service: False
[2025-11-25 01:35:58] 2025-11-25 00:35:16,158 | INFO     | sizes: {0: 2298637, 1: 2298836, 12: 2298836, 23: 2298864, 34: 2298892, 44: 2298920, 55: 2299076, 66: 2299104, 77: 2299132, 87: 2299188, 98: 2299216, 102: 2299786, 
[2025-11-25 01:35:58] 2025-11-25 00:35:16,158 | INFO     | --------------------------------------------------
[2025-11-25 01:35:58] 2025-11-25 00:35:16,158 | INFO     | 
[2025-11-25 01:35:58] 2025-11-25 00:35:16,158 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-11-25 01:35:58] 2025-11-25 00:35:16,757 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 01:35:58] 2025-11-25 00:35:16,758 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 01:35:58] 2025-11-25 00:35:16,758 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 01:35:58] 2025-11-25 00:35:16,758 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 01:35:58] 2025-11-25 00:35:16,758 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 01:35:58] 2025-11-25 00:35:16,758 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 01:35:58] 2025-11-25 00:35:16,758 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 01:35:58] 2025-11-25 00:35:16,766 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 01:35:58] 2025-11-25 00:35:16,766 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 01:35:58] 2025-11-25 00:35:16,766 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 01:35:58] 2025-11-25 00:35:16,766 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 01:35:58] 2025-11-25 00:35:16,766 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 01:35:58] 2025-11-25 00:35:16,766 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 01:35:58] 2025-11-25 00:35:16,766 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 01:35:58] 2025-11-25 00:35:16,767 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 01:35:58] 2025-11-25 00:35:16,767 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 01:35:58] 2025-11-25 00:35:16,767 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 01:35:58] 2025-11-25 00:35:16,767 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 01:35:58] 2025-11-25 00:35:16,767 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 01:35:58] 2025-11-25 00:35:16,767 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 01:35:58] 2025-11-25 00:35:16,767 | INFO     | job 6893864188 has completed (purged errors)
[2025-11-25 01:35:58] 2025-11-25 00:35:16,768 | INFO     | overall cleanup function is called
[2025-11-25 01:35:58] 2025-11-25 00:35:17,022 | INFO     | PID=16993 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 01:35:58] 2025-11-25 00:35:17,023 | INFO     | .. there are 2 such processes running
[2025-11-25 01:35:58] 2025-11-25 00:35:17,785 | INFO     | --- collectZombieJob: --- 10, [23577]
[2025-11-25 01:35:58] 2025-11-25 00:35:17,785 | INFO     | zombie collector waiting for pid 23577
[2025-11-25 01:35:58] 2025-11-25 00:35:17,785 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 01:35:58] 2025-11-25 00:35:17,785 | INFO     | collected zombie processes
[2025-11-25 01:35:58] 2025-11-25 00:35:17,785 | INFO     | will attempt to kill all subprocesses of pid=23577
[2025-11-25 01:35:58] 2025-11-25 00:35:17,866 | INFO     | process IDs to be killed: [23577] (in reverse order)
[2025-11-25 01:35:58] 2025-11-25 00:35:18,788 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 01:35:58] 2025-11-25 00:35:18,788 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 01:35:58] 2025-11-25 00:35:18,790 | INFO     | did not find any defunct processes belonging to 23577
[2025-11-25 01:35:58] 2025-11-25 00:35:18,792 | INFO     | did not find any defunct processes belonging to 23577
[2025-11-25 01:35:58] 2025-11-25 00:35:18,834 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 01:35:58] 2025-11-25 00:35:18,834 | INFO     | ready for new job
[2025-11-25 01:35:58] 2025-11-25 00:35:18,834 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 01:35:58] 2025-11-25 00:35:18,839 | INFO     | ***************************************
[2025-11-25 01:35:58] 2025-11-25 00:35:18,839 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 01:35:58] 2025-11-25 00:35:18,839 | INFO     | ***************************************
[2025-11-25 01:35:58] 2025-11-25 00:35:18,839 | INFO     | 
[2025-11-25 01:35:58] 2025-11-25 00:35:18,840 | INFO     | pilot is running in a VM
[2025-11-25 01:35:58] 2025-11-25 00:35:18,840 | INFO     | architecture information:
[2025-11-25 01:35:58] 2025-11-25 00:35:18,851 | INFO     | executing command: cat /etc/os-release
[2025-11-25 01:35:58] 2025-11-25 00:35:19,091 | INFO     | cat /etc/os-release:
[2025-11-25 01:35:58] NAME="CentOS Linux"
[2025-11-25 01:35:58] VERSION="7 (Core)"
[2025-11-25 01:35:58] ID="centos"
[2025-11-25 01:35:58] ID_LIKE="rhel fedora"
[2025-11-25 01:35:58] VERSION_ID="7"
[2025-11-25 01:35:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 01:35:58] ANSI_COLOR="0;31"
[2025-11-25 01:35:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 01:35:58] HOME_URL="https://www.centos.org/"
[2025-11-25 01:35:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 01:35:58] 
[2025-11-25 01:35:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 01:35:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 01:35:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 01:35:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 01:35:58] 
[2025-11-25 01:35:58] 2025-11-25 00:35:19,091 | INFO     | ***************************************
[2025-11-25 01:35:58] 2025-11-25 00:35:19,596 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-11-25 01:35:58] 2025-11-25 00:35:19,859 | INFO     | sufficient remaining disk space (492842254336 B)
[2025-11-25 01:35:58] 2025-11-25 00:35:19,860 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 01:35:58] 2025-11-25 00:35:19,860 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 01:35:58] 2025-11-25 00:35:19,860 | INFO     | update_server=False
[2025-11-25 01:35:58] 2025-11-25 00:35:19,860 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 01:35:58] 2025-11-25 00:35:19,861 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 01:35:58] 2025-11-25 00:35:19,955 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:35:58] 2025-11-25 00:35:19,955 | INFO     | aborting loop
[2025-11-25 01:35:58] 2025-11-25 00:35:20,103 | INFO     | all data control threads have been joined
[2025-11-25 01:35:58] 2025-11-25 00:35:20,218 | INFO     | all job control threads have been joined
[2025-11-25 01:35:58] 2025-11-25 00:35:20,866 | INFO     | [job] retrieve thread has finished
[2025-11-25 01:35:58] 2025-11-25 00:35:20,961 | INFO     | [job] job monitor thread has finished
[2025-11-25 01:35:58] 2025-11-25 00:35:21,096 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 01:35:58] 2025-11-25 00:35:21,109 | INFO     | [data] control thread has finished
[2025-11-25 01:35:58] 2025-11-25 00:35:21,181 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:35:58] 2025-11-25 00:35:21,188 | INFO     | all payload control threads have been joined
[2025-11-25 01:35:58] 2025-11-25 00:35:21,224 | INFO     | [job] control thread has finished
[2025-11-25 01:35:58] 2025-11-25 00:35:21,271 | INFO     | [payload] failed_post thread has finished
[2025-11-25 01:35:58] 2025-11-25 00:35:21,357 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 01:35:58] 2025-11-25 00:35:21,594 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 01:35:58] 2025-11-25 00:35:21,881 | INFO     | [payload] validate_post thread has finished
[2025-11-25 01:35:58] 2025-11-25 00:35:21,992 | INFO     | [job] validate thread has finished
[2025-11-25 01:35:58] 2025-11-25 00:35:21,992 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 01:35:58] 2025-11-25 00:35:22,089 | INFO     | [data] copytool_in thread has finished
[2025-11-25 01:35:58] 2025-11-25 00:35:22,187 | INFO     | [job] queue monitor thread has finished
[2025-11-25 01:35:58] 2025-11-25 00:35:22,194 | INFO     | [payload] control thread has finished
[2025-11-25 01:35:58] 2025-11-25 00:35:22,220 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 01:35:58] 2025-11-25 00:35:23,103 | INFO     | [data] copytool_out thread has finished
[2025-11-25 01:35:58] 2025-11-25 00:35:23,870 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 01:35:58] 2025-11-25 00:35:47,543 | INFO     | [monitor] cgroup control has ended
[2025-11-25 01:35:58] 2025-11-25 00:35:48,507 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140123294947136)>', '<ExcThread(monitor, started 140122561439488)>']
[2025-11-25 01:35:58] 2025-11-25 00:35:49,148 | INFO     | PID=16993 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 01:35:58] 2025-11-25 00:35:49,148 | INFO     | .. there are 2 such processes running
[2025-11-25 01:35:58] 2025-11-25 00:35:49,149 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 01:35:58] 2025-11-25 00:35:49,150 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 01:35:58] 2025-11-25 00:35:49,150 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 01:35:58] 2025-11-25 00:35:49,150 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 01:35:58] 2025-11-25 00:35:49,150 | INFO     | [monitor] control thread has ended
[2025-11-25 01:35:58] 2025-11-25 00:35:53,533 | INFO     | all workflow threads have been joined
[2025-11-25 01:35:58] 2025-11-25 00:35:53,533 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 01:35:58] 2025-11-25 00:35:53,533 | INFO     | traces error code: 0
[2025-11-25 01:35:58] 2025-11-25 00:35:53,533 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 01:35:58] 2025-11-25 00:35:53,787 [wrapper] ==== pilot stdout END ====
[2025-11-25 01:35:58] 2025-11-25 00:35:53,904 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 01:35:58] 2025-11-25 00:35:54,051 [wrapper] pilotpid: 16993
[2025-11-25 01:35:58] 2025-11-25 00:35:54,213 [wrapper] Pilot exit status: 0
[2025-11-25 01:35:58] 2025-11-25 00:35:54,613 [wrapper] pandaids: 6893864188
[2025-11-25 01:35:58] 2025-11-25 00:35:55,496 [wrapper] cleanup supervisor_pilot 31052 16994
[2025-11-25 01:35:58] 2025-11-25 00:35:55,613 [wrapper] Test setup, not cleaning
[2025-11-25 01:35:58] 2025-11-25 00:35:55,714 [wrapper] apfmon messages muted
[2025-11-25 01:35:58] 2025-11-25 00:35:55,808 [wrapper] ==== wrapper stdout END ====
[2025-11-25 01:35:58] 2025-11-25 00:35:55,922 [wrapper] ==== wrapper stderr END ====
[2025-11-25 01:35:58]  *** Error codes and diagnostics ***
[2025-11-25 01:35:58]     "exeErrorCode": 0,
[2025-11-25 01:35:58]     "exeErrorDiag": "",
[2025-11-25 01:35:58]     "pilotErrorCode": 0,
[2025-11-25 01:35:58]     "pilotErrorDiag": "",
[2025-11-25 01:35:58]  *** Listing of results directory ***
[2025-11-25 01:35:58] total 1317264
[2025-11-25 01:35:58] -rw-r--r--. 1 boinc boinc    576529 Nov 20 15:06 pilot3.tar.gz
[2025-11-25 01:35:58] -rw-r--r--. 1 boinc boinc      5112 Nov 20 15:20 queuedata.json
[2025-11-25 01:35:58] -rwx------. 1 boinc boinc     36292 Nov 20 15:21 runpilot2-wrapper.sh
[2025-11-25 01:35:58] -rw-r--r--. 1 boinc boinc       100 Nov 24 03:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 01:35:58] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 03:55 run_atlas
[2025-11-25 01:35:58] -rw-r--r--. 1 boinc boinc       105 Nov 24 03:55 job.xml
[2025-11-25 01:35:58] -rw-r--r--. 2 boinc boinc 411025077 Nov 24 03:55 EVNT.47493127._000601.pool.root.1
[2025-11-25 01:35:58] -rw-r--r--. 1 boinc boinc      6392 Nov 24 03:55 init_data.xml
[2025-11-25 01:35:58] -rw-r--r--. 2 boinc boinc     15847 Nov 24 03:55 start_atlas.sh
[2025-11-25 01:35:58] drwxrwx--x. 2 boinc boinc        68 Nov 24 03:55 shared
[2025-11-25 01:35:58] -rw-r--r--. 2 boinc boinc    590100 Nov 24 03:55 input.tar.gz
[2025-11-25 01:35:58] -rw-r--r--. 1 boinc boinc         0 Nov 24 03:55 boinc_lockfile
[2025-11-25 01:35:58] -rw-r--r--. 1 boinc boinc      2786 Nov 24 03:55 pandaJob.out
[2025-11-25 01:35:58] -rw-------. 1 boinc boinc    989786 Nov 24 03:57 agis_schedconf.cvmfs.json
[2025-11-25 01:35:58] drwx------. 5 boinc boinc      4096 Nov 24 03:57 pilot3
[2025-11-25 01:35:58] -rw-r--r--. 1 boinc boinc       533 Nov 25 01:04 boinc_task_state.xml
[2025-11-25 01:35:58] -rw-------. 1 boinc boinc 908433384 Nov 25 01:32 HITS.47523449._006009.pool.root.1
[2025-11-25 01:35:58] -rw-------. 1 boinc boinc      1033 Nov 25 01:33 memory_monitor_summary.json
[2025-11-25 01:35:58] -rw-------. 1 boinc boinc   1516227 Nov 25 01:33 agis_ddmendpoints.agis.ALL.json
[2025-11-25 01:35:58] -rw-------. 1 boinc boinc   2392656 Nov 25 01:33 log.47523449._006009.job.log.tgz.1
[2025-11-25 01:35:58] -rw-------. 1 boinc boinc      8641 Nov 25 01:35 heartbeat.json
[2025-11-25 01:35:58] -rw-------. 1 boinc boinc        95 Nov 25 01:35 pilot_heartbeat.json
[2025-11-25 01:35:58] -rw-r--r--. 1 boinc boinc      8192 Nov 25 01:35 boinc_mmap_file
[2025-11-25 01:35:58] -rw-------. 1 boinc boinc      4885 Nov 25 01:35 pilotlog.txt
[2025-11-25 01:35:58] -rw-r--r--. 1 boinc boinc        29 Nov 25 01:35 wrapper_checkpoint.txt
[2025-11-25 01:35:58] -rw-------. 1 boinc boinc  10365884 Nov 25 01:35 log.47523449._006009.job.log.1
[2025-11-25 01:35:58] -rw-------. 1 boinc boinc       353 Nov 25 01:35 output.list
[2025-11-25 01:35:58] -rw-r--r--. 1 boinc boinc       620 Nov 25 01:35 runtime_log
[2025-11-25 01:35:58] -rw-------. 1 boinc boinc  12779520 Nov 25 01:35 result.tar.gz
[2025-11-25 01:35:58] -rw-r--r--. 1 boinc boinc      8833 Nov 25 01:35 runtime_log.err
[2025-11-25 01:35:58] -rw-------. 1 boinc boinc       662 Nov 25 01:35 6EBODmNiKg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm9mGKDmpBrYVn.diag
[2025-11-25 01:35:58] -rw-r--r--. 1 boinc boinc     21494 Nov 25 01:35 stderr.txt
[2025-11-25 01:35:58] HITS file was successfully produced:
[2025-11-25 01:35:58] -rw-------. 1 boinc boinc 908433384 Nov 25 01:32 shared/HITS.pool.root.1
[2025-11-25 01:35:58]  *** Contents of shared directory: ***
[2025-11-25 01:35:58] total 1301612
[2025-11-25 01:35:58] -rw-r--r--. 2 boinc boinc 411025077 Nov 24 03:55 ATLAS.root_0
[2025-11-25 01:35:58] -rw-r--r--. 2 boinc boinc     15847 Nov 24 03:55 start_atlas.sh
[2025-11-25 01:35:58] -rw-r--r--. 2 boinc boinc    590100 Nov 24 03:55 input.tar.gz
[2025-11-25 01:35:58] -rw-------. 1 boinc boinc 908433384 Nov 25 01:32 HITS.pool.root.1
[2025-11-25 01:35:58] -rw-------. 1 boinc boinc  12779520 Nov 25 01:35 result.tar.gz
01:36:00 (13206): run_atlas exited; CPU time 337988.280101
01:36:00 (13206): called boinc_finish(0)

</stderr_txt>
]]>

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