Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:18:12 (1998326): wrapper (7.7.26015): starting
18:18:12 (1998326): wrapper: running run_atlas (--nthreads 4)
[2025-11-23 18:18:12] Arguments: --nthreads 4
[2025-11-23 18:18:12] Threads: 4
[2025-11-23 18:18:12] Checking for CVMFS
[2025-11-23 18:18:12] No cvmfs_config command found, will try listing directly
[2025-11-23 18:18:12] CVMFS is ok
[2025-11-23 18:18:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 18:18:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 18:18:12] Further information can be found at the LHC@home message board.
[2025-11-23 18:18:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 18:18:12] Checking for apptainer binary...
[2025-11-23 18:18:12] which: no apptainer in ((null))
[2025-11-23 18:18:12] apptainer is not installed, using version from CVMFS
[2025-11-23 18:18:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 18:18:12] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot100/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2025-11-23 18:18:12] apptainer works
[2025-11-23 18:18:12] Set ATHENA_PROC_NUMBER=4
[2025-11-23 18:18:12] Set ATHENA_CORE_NUMBER=4
[2025-11-23 18:18:12] Starting ATLAS job with PandaID=6893864474
[2025-11-23 18:18:12] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot100/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 12:10:29]  *** The last 200 lines of the pilot log: ***
[2025-11-24 12:10:29] 2025-11-24 10:58:32,738 | INFO     | monitor loop #4137: job 0:6893864474 is in state 'finished'
[2025-11-24 12:10:29] 2025-11-24 10:58:32,738 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:10:29] 2025-11-24 10:58:33,517 | INFO     | time since job start (63605s) is within the limit (172800.0s)
[2025-11-24 12:10:29] 2025-11-24 10:58:33,703 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 12:10:29] 2025-11-24 10:58:33,725 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2656.4506015625
[2025-11-24 12:10:29] 2025-11-24 10:58:33,751 | INFO     | using path: /scratch/boinc/var/slot100/slots/0/PanDA_Pilot-6893864474/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 12:10:29] 2025-11-24 10:58:33,751 | INFO     | extracted standard info from prmon json
[2025-11-24 12:10:29] 2025-11-24 10:58:33,751 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 12:10:29] 2025-11-24 10:58:33,751 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 12:10:29] 2025-11-24 10:58:33,768 | INFO     | fitting pss+swap vs Time
[2025-11-24 12:10:29] 2025-11-24 10:58:33,769 | INFO     | sum of square deviations: 350820861481.50494
[2025-11-24 12:10:29] 2025-11-24 10:58:33,796 | INFO     | sum of deviations: 674384931589.3657
[2025-11-24 12:10:29] 2025-11-24 10:58:33,796 | INFO     | mean x: 1763950093.6199615
[2025-11-24 12:10:29] 2025-11-24 10:58:33,796 | INFO     | mean y: 2283700.6650671787
[2025-11-24 12:10:29] 2025-11-24 10:58:33,796 | INFO     | intersect: -3388567567.9550204
[2025-11-24 12:10:29] 2025-11-24 10:58:33,797 | INFO     | chi2: 4.228587496354143
[2025-11-24 12:10:29] 2025-11-24 10:58:33,798 | INFO     | sum of square deviations: 345794935603.9326
[2025-11-24 12:10:29] 2025-11-24 10:58:33,825 | INFO     | sum of deviations: 893810760764.1403
[2025-11-24 12:10:29] 2025-11-24 10:58:33,825 | INFO     | mean x: 1763949941.12054
[2025-11-24 12:10:29] 2025-11-24 10:58:33,825 | INFO     | mean y: 2290356.462873674
[2025-11-24 12:10:29] 2025-11-24 10:58:33,825 | INFO     | intersect: -4557167508.55532
[2025-11-24 12:10:29] 2025-11-24 10:58:33,826 | INFO     | chi2: 2.1000948811513274
[2025-11-24 12:10:29] 2025-11-24 10:58:33,826 | INFO     | current chi2=2.1000948811513274 (change=50.33578274158892 %)
[2025-11-24 12:10:29] 2025-11-24 10:58:33,827 | INFO     | sum of square deviations: 340817243188.85944
[2025-11-24 12:10:29] 2025-11-24 10:58:33,854 | INFO     | sum of deviations: 940533496482.7959
[2025-11-24 12:10:29] 2025-11-24 10:58:33,854 | INFO     | mean x: 1763949788.621124
[2025-11-24 12:10:29] 2025-11-24 10:58:33,854 | INFO     | mean y: 2291787.9176356588
[2025-11-24 12:10:29] 2025-11-24 10:58:33,854 | INFO     | intersect: -4865577709.496764
[2025-11-24 12:10:29] 2025-11-24 10:58:33,855 | INFO     | chi2: 1.9770032947993585
[2025-11-24 12:10:29] 2025-11-24 10:58:33,855 | INFO     | current chi2=1.9770032947993585 (change=5.861239292411721 %)
[2025-11-24 12:10:29] 2025-11-24 10:58:33,855 | INFO     | right removable region: 1031
[2025-11-24 12:10:29] 2025-11-24 10:58:33,857 | INFO     | sum of square deviations: 345794859353.9325
[2025-11-24 12:10:29] 2025-11-24 10:58:33,884 | INFO     | sum of deviations: 487391221067.9657
[2025-11-24 12:10:29] 2025-11-24 10:58:33,884 | INFO     | mean x: 1763950246.12054
[2025-11-24 12:10:29] 2025-11-24 10:58:33,884 | INFO     | mean y: 2289364.776277724
[2025-11-24 12:10:29] 2025-11-24 10:58:33,884 | INFO     | intersect: -2483964670.249334
[2025-11-24 12:10:29] 2025-11-24 10:58:33,885 | INFO     | chi2: 2.395339911035593
[2025-11-24 12:10:29] 2025-11-24 10:58:33,886 | INFO     | current chi2=2.395339911035593 (change=43.35366329534773 %)
[2025-11-24 12:10:29] 2025-11-24 10:58:33,887 | INFO     | sum of square deviations: 340817090688.85944
[2025-11-24 12:10:29] 2025-11-24 10:58:33,913 | INFO     | sum of deviations: 473153997998.12805
[2025-11-24 12:10:29] 2025-11-24 10:58:33,913 | INFO     | mean x: 1763950398.621124
[2025-11-24 12:10:29] 2025-11-24 10:58:33,913 | INFO     | mean y: 2289800.5629844964
[2025-11-24 12:10:29] 2025-11-24 10:58:33,913 | INFO     | intersect: -2446590276.697937
[2025-11-24 12:10:29] 2025-11-24 10:58:33,914 | INFO     | chi2: 2.3930707509240086
[2025-11-24 12:10:29] 2025-11-24 10:58:33,914 | INFO     | current chi2=2.3930707509240086 (change=0.09473228000461408 %)
[2025-11-24 12:10:29] 2025-11-24 10:58:33,914 | INFO     | left removable region: 20
[2025-11-24 12:10:29] 2025-11-24 10:58:33,916 | INFO     | sum of square deviations: 320432090985.5452
[2025-11-24 12:10:29] 2025-11-24 10:58:33,940 | INFO     | sum of deviations: 727116911871.3531
[2025-11-24 12:10:29] 2025-11-24 10:58:33,940 | INFO     | mean x: 1763950368.12364
[2025-11-24 12:10:29] 2025-11-24 10:58:33,941 | INFO     | mean y: 2298175.8931750744
[2025-11-24 12:10:29] 2025-11-24 10:58:33,941 | INFO     | intersect: -4000416222.7163453
[2025-11-24 12:10:29] 2025-11-24 10:58:33,942 | INFO     | chi2: 0.12642403798520208
[2025-11-24 12:10:29] 2025-11-24 10:58:33,942 | INFO     | current memory leak: 2.27 B/s (using 1011 data points, chi2=0.13)
[2025-11-24 12:10:29] 2025-11-24 10:58:33,943 | INFO     | could have reported an average CPU frequency of 2649 MHz (38 samples)
[2025-11-24 12:10:29] 2025-11-24 10:58:33,943 | INFO     | ..............................
[2025-11-24 12:10:29] 2025-11-24 10:58:33,943 | INFO     | . Timing measurements:
[2025-11-24 12:10:29] 2025-11-24 10:58:33,943 | INFO     | . get job = 0 s
[2025-11-24 12:10:29] 2025-11-24 10:58:33,943 | INFO     | . initial setup = 1 s
[2025-11-24 12:10:29] 2025-11-24 10:58:33,943 | INFO     | . payload setup = 9 s
[2025-11-24 12:10:29] 2025-11-24 10:58:33,943 | INFO     | . stage-in = 0 s
[2025-11-24 12:10:29] 2025-11-24 10:58:33,944 | INFO     | . payload execution = 63561 s
[2025-11-24 12:10:29] 2025-11-24 10:58:33,944 | INFO     | . stage-out = 4 s
[2025-11-24 12:10:29] 2025-11-24 10:58:33,944 | INFO     | . log creation = 1 s
[2025-11-24 12:10:29] 2025-11-24 10:58:33,944 | INFO     | ..............................
[2025-11-24 12:10:29] 2025-11-24 10:58:34,041 | INFO     | 
[2025-11-24 12:10:29] 2025-11-24 10:58:34,041 | INFO     | job summary report
[2025-11-24 12:10:29] 2025-11-24 10:58:34,041 | INFO     | --------------------------------------------------
[2025-11-24 12:10:29] 2025-11-24 10:58:34,042 | INFO     | PanDA job id: 6893864474
[2025-11-24 12:10:29] 2025-11-24 10:58:34,042 | INFO     | task id: 47523449
[2025-11-24 12:10:29] 2025-11-24 10:58:34,042 | INFO     | errors: (none)
[2025-11-24 12:10:29] 2025-11-24 10:58:34,042 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 12:10:29] 2025-11-24 10:58:34,042 | INFO     | pilot state: finished 
[2025-11-24 12:10:29] 2025-11-24 10:58:34,042 | INFO     | transexitcode: 0
[2025-11-24 12:10:29] 2025-11-24 10:58:34,042 | INFO     | exeerrorcode: 0
[2025-11-24 12:10:29] 2025-11-24 10:58:34,042 | INFO     | exeerrordiag: 
[2025-11-24 12:10:29] 2025-11-24 10:58:34,042 | INFO     | exitcode: 0
[2025-11-24 12:10:29] 2025-11-24 10:58:34,042 | INFO     | exitmsg: OK
[2025-11-24 12:10:29] 2025-11-24 10:58:34,042 | INFO     | cpuconsumptiontime: 242816 s
[2025-11-24 12:10:29] 2025-11-24 10:58:34,042 | INFO     | nevents: 1000
[2025-11-24 12:10:29] 2025-11-24 10:58:34,042 | INFO     | neventsw: 0
[2025-11-24 12:10:29] 2025-11-24 10:58:34,042 | INFO     | pid: 2010583
[2025-11-24 12:10:29] 2025-11-24 10:58:34,043 | INFO     | pgrp: 2010583
[2025-11-24 12:10:29] 2025-11-24 10:58:34,043 | INFO     | corecount: 4
[2025-11-24 12:10:29] 2025-11-24 10:58:34,043 | INFO     | event service: False
[2025-11-24 12:10:29] 2025-11-24 10:58:34,043 | INFO     | sizes: {0: 2298819, 7: 2299081, 11: 2299109, 63574: 2355093, 63579: 2364167, 63587: 2364357}
[2025-11-24 12:10:29] 2025-11-24 10:58:34,043 | INFO     | --------------------------------------------------
[2025-11-24 12:10:29] 2025-11-24 10:58:34,043 | INFO     | 
[2025-11-24 12:10:29] 2025-11-24 10:58:34,043 | INFO     | executing command: ls -lF /scratch/boinc/var/slot100/slots/0
[2025-11-24 12:10:29] 2025-11-24 10:58:34,072 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 12:10:29] 2025-11-24 10:58:34,072 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 12:10:29] 2025-11-24 10:58:34,072 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 12:10:29] 2025-11-24 10:58:34,073 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 12:10:29] 2025-11-24 10:58:34,073 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 12:10:29] 2025-11-24 10:58:34,073 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 12:10:29] 2025-11-24 10:58:34,073 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 12:10:29] 2025-11-24 10:58:34,073 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 12:10:29] 2025-11-24 10:58:34,073 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 12:10:29] 2025-11-24 10:58:34,073 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 12:10:29] 2025-11-24 10:58:34,073 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 12:10:29] 2025-11-24 10:58:34,073 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 12:10:29] 2025-11-24 10:58:34,073 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 12:10:29] 2025-11-24 10:58:34,074 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 12:10:29] 2025-11-24 10:58:34,074 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 12:10:29] 2025-11-24 10:58:34,074 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 12:10:29] 2025-11-24 10:58:34,074 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 12:10:29] 2025-11-24 10:58:34,074 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 12:10:29] 2025-11-24 10:58:34,074 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 12:10:29] 2025-11-24 10:58:34,074 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 12:10:29] 2025-11-24 10:58:34,074 | INFO     | job 6893864474 has completed (purged errors)
[2025-11-24 12:10:29] 2025-11-24 10:58:34,075 | INFO     | overall cleanup function is called
[2025-11-24 12:10:29] 2025-11-24 10:58:35,092 | INFO     | --- collectZombieJob: --- 10, [2010583]
[2025-11-24 12:10:29] 2025-11-24 10:58:35,093 | INFO     | zombie collector waiting for pid 2010583
[2025-11-24 12:10:29] 2025-11-24 10:58:35,093 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 12:10:29] 2025-11-24 10:58:35,093 | INFO     | collected zombie processes
[2025-11-24 12:10:29] 2025-11-24 10:58:35,093 | INFO     | will attempt to kill all subprocesses of pid=2010583
[2025-11-24 12:10:29] 2025-11-24 10:58:35,936 | INFO     | process IDs to be killed: [2010583] (in reverse order)
[2025-11-24 12:10:29] 2025-11-24 10:58:36,204 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 12:10:29] 2025-11-24 10:58:36,204 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 12:10:29] 2025-11-24 10:58:36,237 | INFO     | did not find any defunct processes belonging to 2010583
[2025-11-24 12:10:29] 2025-11-24 10:58:36,270 | INFO     | did not find any defunct processes belonging to 2010583
[2025-11-24 12:10:29] 2025-11-24 10:58:36,271 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 12:10:29] 2025-11-24 10:58:36,271 | INFO     | ready for new job
[2025-11-24 12:10:29] 2025-11-24 10:58:36,271 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 12:10:29] 2025-11-24 10:58:36,278 | INFO     | ***************************************
[2025-11-24 12:10:29] 2025-11-24 10:58:36,280 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 12:10:29] 2025-11-24 10:58:36,280 | INFO     | ***************************************
[2025-11-24 12:10:29] 2025-11-24 10:58:36,280 | INFO     | 
[2025-11-24 12:10:29] 2025-11-24 10:58:36,289 | INFO     | architecture information:
[2025-11-24 12:10:29] 2025-11-24 10:58:36,290 | INFO     | executing command: cat /etc/os-release
[2025-11-24 12:10:29] 2025-11-24 10:58:36,312 | INFO     | cat /etc/os-release:
[2025-11-24 12:10:29] NAME="CentOS Linux"
[2025-11-24 12:10:29] VERSION="7 (Core)"
[2025-11-24 12:10:29] ID="centos"
[2025-11-24 12:10:29] ID_LIKE="rhel fedora"
[2025-11-24 12:10:29] VERSION_ID="7"
[2025-11-24 12:10:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 12:10:29] ANSI_COLOR="0;31"
[2025-11-24 12:10:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 12:10:29] HOME_URL="https://www.centos.org/"
[2025-11-24 12:10:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 12:10:29] 
[2025-11-24 12:10:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 12:10:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 12:10:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 12:10:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 12:10:29] 
[2025-11-24 12:10:29] 2025-11-24 10:58:36,313 | INFO     | ***************************************
[2025-11-24 12:10:29] 2025-11-24 10:58:36,816 | INFO     | executing command: df -mP /scratch/boinc/var/slot100/slots/0
[2025-11-24 12:10:29] 2025-11-24 10:58:36,841 | INFO     | sufficient remaining disk space (3295475138560 B)
[2025-11-24 12:10:29] 2025-11-24 10:58:36,841 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 12:10:29] 2025-11-24 10:58:36,842 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 12:10:29] 2025-11-24 10:58:36,842 | INFO     | update_server=False
[2025-11-24 12:10:29] 2025-11-24 10:58:36,842 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 12:10:29] 2025-11-24 10:58:36,842 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 12:10:29] 2025-11-24 10:58:36,842 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 12:10:29] 2025-11-24 10:58:36,843 | INFO     | aborting loop
[2025-11-24 12:10:29] 2025-11-24 10:58:36,843 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 12:10:29] 2025-11-24 10:58:36,929 | INFO     | all payload control threads have been joined
[2025-11-24 12:10:29] 2025-11-24 10:58:37,055 | INFO     | all data control threads have been joined
[2025-11-24 12:10:29] 2025-11-24 10:58:37,450 | INFO     | all job control threads have been joined
[2025-11-24 12:10:29] 2025-11-24 10:58:37,848 | INFO     | [job] retrieve thread has finished
[2025-11-24 12:10:29] 2025-11-24 10:58:37,849 | INFO     | [job] job monitor thread has finished
[2025-11-24 12:10:29] 2025-11-24 10:58:37,916 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 12:10:29] 2025-11-24 10:58:37,934 | INFO     | [payload] control thread has finished
[2025-11-24 12:10:29] 2025-11-24 10:58:38,061 | INFO     | [data] control thread has finished
[2025-11-24 12:10:29] 2025-11-24 10:58:38,166 | INFO     | [payload] validate_post thread has finished
[2025-11-24 12:10:29] 2025-11-24 10:58:38,439 | INFO     | [job] validate thread has finished
[2025-11-24 12:10:29] 2025-11-24 10:58:38,452 | INFO     | [job] control thread has finished
[2025-11-24 12:10:29] 2025-11-24 10:58:38,572 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 12:10:29] 2025-11-24 10:58:38,805 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 12:10:29] 2025-11-24 10:58:38,847 | INFO     | [data] copytool_out thread has finished
[2025-11-24 12:10:29] 2025-11-24 10:58:38,968 | INFO     | [payload] failed_post thread has finished
[2025-11-24 12:10:29] 2025-11-24 10:58:39,040 | INFO     | [data] copytool_in thread has finished
[2025-11-24 12:10:29] 2025-11-24 10:58:39,047 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 12:10:29] 2025-11-24 10:58:39,121 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 12:10:29] 2025-11-24 10:58:40,054 | INFO     | [job] queue monitor thread has finished
[2025-11-24 12:10:29] 2025-11-24 10:58:40,850 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 12:10:29] 2025-11-24 10:59:07,567 | INFO     | PID=2002754 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 12:10:29] 2025-11-24 10:59:07,567 | INFO     | .. there are 10 such processes running
[2025-11-24 12:10:29] 2025-11-24 10:59:07,567 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 12:10:29] 2025-11-24 10:59:07,567 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 12:10:29] 2025-11-24 10:59:07,567 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 12:10:29] 2025-11-24 10:59:14,993 | INFO     | [monitor] cgroup control has ended
[2025-11-24 12:10:29] 2025-11-24 10:59:15,018 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22437903566656)>', '<ExcThread(monitor, started 22437664093952)>']
[2025-11-24 12:10:29] 2025-11-24 10:59:15,612 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 12:10:29] 2025-11-24 10:59:15,612 | INFO     | [monitor] control thread has ended
[2025-11-24 12:10:29] 2025-11-24 10:59:20,045 | INFO     | all workflow threads have been joined
[2025-11-24 12:10:29] 2025-11-24 10:59:20,045 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 12:10:29] 2025-11-24 10:59:20,045 | INFO     | traces error code: 0
[2025-11-24 12:10:29] 2025-11-24 10:59:20,045 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 12:10:29] 2025-11-24 10:59:20,210 [wrapper] ==== pilot stdout END ====
[2025-11-24 12:10:29] 2025-11-24 10:59:20,215 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 12:10:29] 2025-11-24 10:59:20,219 [wrapper] pilotpid: 2002754
[2025-11-24 12:10:29] 2025-11-24 10:59:20,223 [wrapper] Pilot exit status: 0
[2025-11-24 12:10:29] 2025-11-24 10:59:20,239 [wrapper] pandaids: 6893864474
[2025-11-24 12:10:29] 2025-11-24 10:59:20,423 [wrapper] cleanup supervisor_pilot 3819697 2002755
[2025-11-24 12:10:29] 2025-11-24 10:59:20,428 [wrapper] Test setup, not cleaning
[2025-11-24 12:10:29] 2025-11-24 10:59:20,432 [wrapper] apfmon messages muted
[2025-11-24 12:10:29] 2025-11-24 10:59:20,435 [wrapper] ==== wrapper stdout END ====
[2025-11-24 12:10:29] 2025-11-24 10:59:20,438 [wrapper] ==== wrapper stderr END ====
[2025-11-24 12:10:29]  *** Error codes and diagnostics ***
[2025-11-24 12:10:29]     "exeErrorCode": 0,
[2025-11-24 12:10:29]     "exeErrorDiag": "",
[2025-11-24 12:10:29]     "pilotErrorCode": 0,
[2025-11-24 12:10:29]     "pilotErrorDiag": "",
[2025-11-24 12:10:29]  *** Listing of results directory ***
[2025-11-24 12:10:29] total 1323064
[2025-11-24 12:10:29] -rw-r--r-- 1 boinc boinc    576529 Nov 20 15:06 pilot3.tar.gz
[2025-11-24 12:10:29] -rwx------ 1 boinc boinc     36292 Nov 20 15:27 runpilot2-wrapper.sh
[2025-11-24 12:10:29] -rw-r--r-- 1 boinc boinc      5112 Nov 20 15:27 queuedata.json
[2025-11-24 12:10:29] -rw-r--r-- 1 boinc boinc       100 Nov 23 18:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 12:10:29] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 18:18 run_atlas
[2025-11-24 12:10:29] -rw-r--r-- 1 boinc boinc       105 Nov 23 18:18 job.xml
[2025-11-24 12:10:29] -rw-r--r-- 2 boinc boinc 407395983 Nov 23 18:18 EVNT.47493127._000608.pool.root.1
[2025-11-24 12:10:29] -rw-r--r-- 1 boinc boinc      6686 Nov 23 18:18 init_data.xml
[2025-11-24 12:10:29] -rw-r--r-- 2 boinc boinc     15847 Nov 23 18:18 start_atlas.sh
[2025-11-24 12:10:29] drwxrwx--x 2 boinc boinc      4096 Nov 23 18:18 shared
[2025-11-24 12:10:29] -rw-r--r-- 2 boinc boinc    590099 Nov 23 18:18 input.tar.gz
[2025-11-24 12:10:29] -rw-r--r-- 1 boinc boinc         0 Nov 23 18:18 boinc_lockfile
[2025-11-24 12:10:29] -rw-r--r-- 1 boinc boinc      2786 Nov 23 18:18 pandaJob.out
[2025-11-24 12:10:29] -rw------- 1 boinc boinc    989786 Nov 23 18:18 agis_schedconf.cvmfs.json
[2025-11-24 12:10:29] drwx------ 5 boinc boinc      4096 Nov 23 18:18 pilot3
[2025-11-24 12:10:29] -rw-r--r-- 1 boinc boinc       531 Nov 24 11:47 boinc_task_state.xml
[2025-11-24 12:10:29] -rw------- 1 boinc boinc 922887944 Nov 24 11:57 HITS.47523449._006080.pool.root.1
[2025-11-24 12:10:29] -rw------- 1 boinc boinc        95 Nov 24 11:58 pilot_heartbeat.json
[2025-11-24 12:10:29] -rw------- 1 boinc boinc      1038 Nov 24 11:58 memory_monitor_summary.json
[2025-11-24 12:10:29] -rw------- 1 boinc boinc   1526164 Nov 24 11:58 agis_ddmendpoints.agis.ALL.json
[2025-11-24 12:10:29] -rw------- 1 boinc boinc   1748018 Nov 24 11:58 log.47523449._006080.job.log.tgz.1
[2025-11-24 12:10:29] -rw------- 1 boinc boinc      8602 Nov 24 11:58 heartbeat.json
[2025-11-24 12:10:29] -rw------- 1 boinc boinc      4836 Nov 24 11:59 pilotlog.txt
[2025-11-24 12:10:29] -rw------- 1 boinc boinc   8569015 Nov 24 11:59 log.47523449._006080.job.log.1
[2025-11-24 12:10:29] -rw------- 1 boinc boinc       353 Nov 24 11:59 output.list
[2025-11-24 12:10:29] -rw-r--r-- 1 boinc boinc       620 Nov 24 11:59 runtime_log
[2025-11-24 12:10:29] -rw------- 1 boinc boinc  10332160 Nov 24 11:59 result.tar.gz
[2025-11-24 12:10:29] -rw-r--r-- 1 boinc boinc      9223 Nov 24 11:59 runtime_log.err
[2025-11-24 12:10:29] -rw------- 1 boinc boinc       671 Nov 24 11:59 nkBMDmCoKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDml4HKDmMqwolm.diag
[2025-11-24 12:10:29] -rw-r--r-- 1 boinc boinc        28 Nov 24 12:10 wrapper_checkpoint.txt
[2025-11-24 12:10:29] -rw-r--r-- 1 boinc boinc      8192 Nov 24 12:10 boinc_mmap_file
[2025-11-24 12:10:29] -rw-r--r-- 1 boinc boinc      1895 Nov 24 12:10 stderr.txt
[2025-11-24 12:10:29] HITS file was successfully produced:
[2025-11-24 12:10:29] -rw------- 1 boinc boinc 922887944 Nov 24 11:57 shared/HITS.pool.root.1
[2025-11-24 12:10:29]  *** Contents of shared directory: ***
[2025-11-24 12:10:29] total 1309804
[2025-11-24 12:10:29] -rw-r--r-- 2 boinc boinc 407395983 Nov 23 18:18 ATLAS.root_0
[2025-11-24 12:10:29] -rw-r--r-- 2 boinc boinc     15847 Nov 23 18:18 start_atlas.sh
[2025-11-24 12:10:29] -rw-r--r-- 2 boinc boinc    590099 Nov 23 18:18 input.tar.gz
[2025-11-24 12:10:29] -rw------- 1 boinc boinc 922887944 Nov 24 11:57 HITS.pool.root.1
[2025-11-24 12:10:29] -rw------- 1 boinc boinc  10332160 Nov 24 11:59 result.tar.gz
12:10:31 (1998326): run_atlas exited; CPU time 246017.063014
12:10:31 (1998326): called boinc_finish(0)

</stderr_txt>
]]>

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