Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:20:16 (3464961): wrapper (7.7.26015): starting
02:20:16 (3464961): wrapper: running run_atlas (--nthreads 4)
[2025-11-24 02:20:16] Arguments: --nthreads 4
[2025-11-24 02:20:16] Threads: 4
[2025-11-24 02:20:16] Checking for CVMFS
[2025-11-24 02:20:16] No cvmfs_config command found, will try listing directly
[2025-11-24 02:20:16] CVMFS is ok
[2025-11-24 02:20:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 02:20:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 02:20:16] Further information can be found at the LHC@home message board.
[2025-11-24 02:20:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 02:20:16] Checking for apptainer binary...
[2025-11-24 02:20:16] which: no apptainer in ((null))
[2025-11-24 02:20:16] apptainer is not installed, using version from CVMFS
[2025-11-24 02:20:16] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 02:20:16] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut09.grid.cesnet.cz
[2025-11-24 02:20:16] apptainer works
[2025-11-24 02:20:16] Set ATHENA_PROC_NUMBER=4
[2025-11-24 02:20:16] Set ATHENA_CORE_NUMBER=4
[2025-11-24 02:20:16] Starting ATLAS job with PandaID=6893850769
[2025-11-24 02:20:16] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 21:51:25]  *** The last 200 lines of the pilot log: ***
[2025-11-24 21:51:25] 2025-11-24 20:47:36,734 | INFO     | time since job start (70029s) is within the limit (172800.0s)
[2025-11-24 21:51:25] 2025-11-24 20:47:37,889 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 21:51:25] 2025-11-24 20:47:37,900 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2532.3373125000003
[2025-11-24 21:51:25] 2025-11-24 20:47:37,914 | INFO     | using path: /scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6893850769/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 21:51:25] 2025-11-24 20:47:37,915 | INFO     | extracted standard info from prmon json
[2025-11-24 21:51:25] 2025-11-24 20:47:37,915 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 21:51:25] 2025-11-24 20:47:37,915 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 21:51:25] 2025-11-24 20:47:37,928 | INFO     | fitting pss+swap vs Time
[2025-11-24 21:51:25] 2025-11-24 20:47:37,929 | INFO     | sum of square deviations: 469140891256.1698
[2025-11-24 21:51:25] 2025-11-24 20:47:37,946 | INFO     | sum of deviations: 1279996283424.5037
[2025-11-24 21:51:25] 2025-11-24 20:47:37,946 | INFO     | mean x: 1763982238.5496516
[2025-11-24 21:51:25] 2025-11-24 20:47:37,946 | INFO     | mean y: 2286454.631533101
[2025-11-24 21:51:25] 2025-11-24 20:47:37,946 | INFO     | intersect: -4810533641.533334
[2025-11-24 21:51:25] 2025-11-24 20:47:37,948 | INFO     | chi2: 5.053287625546393
[2025-11-24 21:51:25] 2025-11-24 20:47:37,949 | INFO     | sum of square deviations: 463037668626.15753
[2025-11-24 21:51:25] 2025-11-24 20:47:37,967 | INFO     | sum of deviations: 1583718135975.2058
[2025-11-24 21:51:25] 2025-11-24 20:47:37,967 | INFO     | mean x: 1763982086.0498688
[2025-11-24 21:51:25] 2025-11-24 20:47:37,967 | INFO     | mean y: 2294044.7156605422
[2025-11-24 21:51:25] 2025-11-24 20:47:37,967 | INFO     | intersect: -6031017304.448162
[2025-11-24 21:51:25] 2025-11-24 20:47:37,968 | INFO     | chi2: 1.9689165064946081
[2025-11-24 21:51:25] 2025-11-24 20:47:37,968 | INFO     | current chi2=1.9689165064946081 (change=61.03691987487618 %)
[2025-11-24 21:51:25] 2025-11-24 20:47:37,969 | INFO     | sum of square deviations: 456987609783.64435
[2025-11-24 21:51:25] 2025-11-24 20:47:37,987 | INFO     | sum of deviations: 1641961876991.7642
[2025-11-24 21:51:25] 2025-11-24 20:47:37,987 | INFO     | mean x: 1763981933.550088
[2025-11-24 21:51:25] 2025-11-24 20:47:37,987 | INFO     | mean y: 2295510.8550087875
[2025-11-24 21:51:25] 2025-11-24 20:47:37,987 | INFO     | intersect: -6335712401.356719
[2025-11-24 21:51:25] 2025-11-24 20:47:37,988 | INFO     | chi2: 1.756609808594049
[2025-11-24 21:51:25] 2025-11-24 20:47:37,988 | INFO     | current chi2=1.756609808594049 (change=10.78292031176796 %)
[2025-11-24 21:51:25] 2025-11-24 20:47:37,988 | INFO     | right removable region: 1137
[2025-11-24 21:51:25] 2025-11-24 20:47:37,989 | INFO     | sum of square deviations: 463037633856.15753
[2025-11-24 21:51:25] 2025-11-24 20:47:38,007 | INFO     | sum of deviations: 1081140051554.9736
[2025-11-24 21:51:25] 2025-11-24 20:47:38,008 | INFO     | mean x: 1763982391.0498688
[2025-11-24 21:51:25] 2025-11-24 20:47:38,008 | INFO     | mean y: 2291415.8250218723
[2025-11-24 21:51:25] 2025-11-24 20:47:38,008 | INFO     | intersect: -4116406231.5333014
[2025-11-24 21:51:25] 2025-11-24 20:47:38,009 | INFO     | chi2: 3.4035354814908505
[2025-11-24 21:51:25] 2025-11-24 20:47:38,009 | INFO     | current chi2=3.4035354814908505 (change=32.64710553413554 %)
[2025-11-24 21:51:25] 2025-11-24 20:47:38,010 | INFO     | sum of square deviations: 456987540243.64417
[2025-11-24 21:51:25] 2025-11-24 20:47:38,026 | INFO     | sum of deviations: 1060574939132.8673
[2025-11-24 21:51:25] 2025-11-24 20:47:38,027 | INFO     | mean x: 1763982543.550088
[2025-11-24 21:51:25] 2025-11-24 20:47:38,027 | INFO     | mean y: 2291933.818101933
[2025-11-24 21:51:25] 2025-11-24 20:47:38,027 | INFO     | intersect: -4091552020.351051
[2025-11-24 21:51:25] 2025-11-24 20:47:38,027 | INFO     | chi2: 3.4018536040809764
[2025-11-24 21:51:25] 2025-11-24 20:47:38,028 | INFO     | current chi2=3.4018536040809764 (change=0.04941559795749273 %)
[2025-11-24 21:51:25] 2025-11-24 20:47:38,028 | INFO     | left removable region: 20
[2025-11-24 21:51:25] 2025-11-24 20:47:38,028 | INFO     | sum of square deviations: 432152523654.09143
[2025-11-24 21:51:25] 2025-11-24 20:47:38,046 | INFO     | sum of deviations: 1381994002511.3586
[2025-11-24 21:51:25] 2025-11-24 20:47:38,046 | INFO     | mean x: 1763982513.0510294
[2025-11-24 21:51:25] 2025-11-24 20:47:38,047 | INFO     | mean y: 2301951.8182632052
[2025-11-24 21:51:25] 2025-11-24 20:47:38,047 | INFO     | intersect: -5638792615.808837
[2025-11-24 21:51:25] 2025-11-24 20:47:38,047 | INFO     | chi2: 0.0885919940826763
[2025-11-24 21:51:25] 2025-11-24 20:47:38,048 | INFO     | current memory leak: 3.20 B/s (using 1117 data points, chi2=0.09)
[2025-11-24 21:51:25] 2025-11-24 20:47:38,048 | INFO     | could have reported an average CPU frequency of 2553 MHz (42 samples)
[2025-11-24 21:51:25] 2025-11-24 20:47:38,049 | INFO     | ..............................
[2025-11-24 21:51:25] 2025-11-24 20:47:38,049 | INFO     | . Timing measurements:
[2025-11-24 21:51:25] 2025-11-24 20:47:38,049 | INFO     | . get job = 0 s
[2025-11-24 21:51:25] 2025-11-24 20:47:38,049 | INFO     | . initial setup = 1 s
[2025-11-24 21:51:25] 2025-11-24 20:47:38,049 | INFO     | . payload setup = 6 s
[2025-11-24 21:51:25] 2025-11-24 20:47:38,049 | INFO     | . stage-in = 0 s
[2025-11-24 21:51:25] 2025-11-24 20:47:38,049 | INFO     | . payload execution = 69992 s
[2025-11-24 21:51:25] 2025-11-24 20:47:38,049 | INFO     | . stage-out = 2 s
[2025-11-24 21:51:25] 2025-11-24 20:47:38,049 | INFO     | . log creation = 0 s
[2025-11-24 21:51:25] 2025-11-24 20:47:38,049 | INFO     | ..............................
[2025-11-24 21:51:25] 2025-11-24 20:47:38,472 | INFO     | 
[2025-11-24 21:51:25] 2025-11-24 20:47:38,472 | INFO     | job summary report
[2025-11-24 21:51:25] 2025-11-24 20:47:38,472 | INFO     | --------------------------------------------------
[2025-11-24 21:51:25] 2025-11-24 20:47:38,472 | INFO     | PanDA job id: 6893850769
[2025-11-24 21:51:25] 2025-11-24 20:47:38,472 | INFO     | task id: 47523449
[2025-11-24 21:51:25] 2025-11-24 20:47:38,472 | INFO     | errors: (none)
[2025-11-24 21:51:25] 2025-11-24 20:47:38,473 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 21:51:25] 2025-11-24 20:47:38,473 | INFO     | pilot state: finished 
[2025-11-24 21:51:25] 2025-11-24 20:47:38,473 | INFO     | transexitcode: 0
[2025-11-24 21:51:25] 2025-11-24 20:47:38,473 | INFO     | exeerrorcode: 0
[2025-11-24 21:51:25] 2025-11-24 20:47:38,473 | INFO     | exeerrordiag: 
[2025-11-24 21:51:25] 2025-11-24 20:47:38,473 | INFO     | exitcode: 0
[2025-11-24 21:51:25] 2025-11-24 20:47:38,473 | INFO     | exitmsg: OK
[2025-11-24 21:51:25] 2025-11-24 20:47:38,473 | INFO     | cpuconsumptiontime: 273799 s
[2025-11-24 21:51:25] 2025-11-24 20:47:38,473 | INFO     | nevents: 1000
[2025-11-24 21:51:25] 2025-11-24 20:47:38,473 | INFO     | neventsw: 0
[2025-11-24 21:51:25] 2025-11-24 20:47:38,473 | INFO     | pid: 3475716
[2025-11-24 21:51:25] 2025-11-24 20:47:38,473 | INFO     | pgrp: 3475716
[2025-11-24 21:51:25] 2025-11-24 20:47:38,473 | INFO     | corecount: 4
[2025-11-24 21:51:25] 2025-11-24 20:47:38,474 | INFO     | event service: False
[2025-11-24 21:51:25] 2025-11-24 20:47:38,474 | INFO     | sizes: {0: 2298646, 1: 2298845, 5: 2299107, 11: 2299163, 70003: 2356080, 70005: 2365887, 70008: 2366071, 70014: 2366317}
[2025-11-24 21:51:25] 2025-11-24 20:47:38,474 | INFO     | --------------------------------------------------
[2025-11-24 21:51:25] 2025-11-24 20:47:38,474 | INFO     | 
[2025-11-24 21:51:25] 2025-11-24 20:47:38,474 | INFO     | executing command: ls -lF /scratch/boinc/var/slot56/slots/0
[2025-11-24 21:51:25] 2025-11-24 20:47:38,497 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 21:51:25] 2025-11-24 20:47:38,497 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 21:51:25] 2025-11-24 20:47:38,497 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 21:51:25] 2025-11-24 20:47:38,497 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 21:51:25] 2025-11-24 20:47:38,497 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 21:51:25] 2025-11-24 20:47:38,498 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 21:51:25] 2025-11-24 20:47:38,498 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 21:51:25] 2025-11-24 20:47:38,498 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 21:51:25] 2025-11-24 20:47:38,498 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 21:51:25] 2025-11-24 20:47:38,498 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 21:51:25] 2025-11-24 20:47:38,498 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 21:51:25] 2025-11-24 20:47:38,498 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 21:51:25] 2025-11-24 20:47:38,498 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 21:51:25] 2025-11-24 20:47:38,498 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 21:51:25] 2025-11-24 20:47:38,498 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 21:51:25] 2025-11-24 20:47:38,498 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 21:51:25] 2025-11-24 20:47:38,499 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 21:51:25] 2025-11-24 20:47:38,499 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 21:51:25] 2025-11-24 20:47:38,499 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 21:51:25] 2025-11-24 20:47:38,499 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 21:51:25] 2025-11-24 20:47:38,499 | INFO     | job 6893850769 has completed (purged errors)
[2025-11-24 21:51:25] 2025-11-24 20:47:38,499 | INFO     | overall cleanup function is called
[2025-11-24 21:51:25] 2025-11-24 20:47:39,514 | INFO     | --- collectZombieJob: --- 10, [3475716]
[2025-11-24 21:51:25] 2025-11-24 20:47:39,514 | INFO     | zombie collector waiting for pid 3475716
[2025-11-24 21:51:25] 2025-11-24 20:47:39,514 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 21:51:25] 2025-11-24 20:47:39,514 | INFO     | collected zombie processes
[2025-11-24 21:51:25] 2025-11-24 20:47:39,514 | INFO     | will attempt to kill all subprocesses of pid=3475716
[2025-11-24 21:51:25] 2025-11-24 20:47:39,942 | INFO     | process IDs to be killed: [3475716] (in reverse order)
[2025-11-24 21:51:25] 2025-11-24 20:47:40,067 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 21:51:25] 2025-11-24 20:47:40,067 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 21:51:25] 2025-11-24 20:47:40,081 | INFO     | did not find any defunct processes belonging to 3475716
[2025-11-24 21:51:25] 2025-11-24 20:47:40,095 | INFO     | did not find any defunct processes belonging to 3475716
[2025-11-24 21:51:25] 2025-11-24 20:47:40,097 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 21:51:25] 2025-11-24 20:47:40,097 | INFO     | ready for new job
[2025-11-24 21:51:25] 2025-11-24 20:47:40,097 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 21:51:25] 2025-11-24 20:47:40,103 | INFO     | ***************************************
[2025-11-24 21:51:25] 2025-11-24 20:47:40,104 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 21:51:25] 2025-11-24 20:47:40,104 | INFO     | ***************************************
[2025-11-24 21:51:25] 2025-11-24 20:47:40,104 | INFO     | 
[2025-11-24 21:51:25] 2025-11-24 20:47:40,108 | INFO     | architecture information:
[2025-11-24 21:51:25] 2025-11-24 20:47:40,109 | INFO     | executing command: cat /etc/os-release
[2025-11-24 21:51:25] 2025-11-24 20:47:40,126 | INFO     | cat /etc/os-release:
[2025-11-24 21:51:25] NAME="CentOS Linux"
[2025-11-24 21:51:25] VERSION="7 (Core)"
[2025-11-24 21:51:25] ID="centos"
[2025-11-24 21:51:25] ID_LIKE="rhel fedora"
[2025-11-24 21:51:25] VERSION_ID="7"
[2025-11-24 21:51:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 21:51:25] ANSI_COLOR="0;31"
[2025-11-24 21:51:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 21:51:25] HOME_URL="https://www.centos.org/"
[2025-11-24 21:51:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 21:51:25] 
[2025-11-24 21:51:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 21:51:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 21:51:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 21:51:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 21:51:25] 
[2025-11-24 21:51:25] 2025-11-24 20:47:40,127 | INFO     | ***************************************
[2025-11-24 21:51:25] 2025-11-24 20:47:40,630 | INFO     | executing command: df -mP /scratch/boinc/var/slot56/slots/0
[2025-11-24 21:51:25] 2025-11-24 20:47:40,647 | INFO     | sufficient remaining disk space (669835591680 B)
[2025-11-24 21:51:25] 2025-11-24 20:47:40,648 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 21:51:25] 2025-11-24 20:47:40,648 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 21:51:25] 2025-11-24 20:47:40,648 | INFO     | update_server=False
[2025-11-24 21:51:25] 2025-11-24 20:47:40,648 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 21:51:25] 2025-11-24 20:47:40,649 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 21:51:25] 2025-11-24 20:47:40,831 | INFO     | all job control threads have been joined
[2025-11-24 21:51:25] 2025-11-24 20:47:40,881 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 21:51:25] 2025-11-24 20:47:40,881 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 21:51:25] 2025-11-24 20:47:40,881 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 21:51:25] 2025-11-24 20:47:40,882 | INFO     | will abort loop
[2025-11-24 21:51:25] 2025-11-24 20:47:41,225 | INFO     | all data control threads have been joined
[2025-11-24 21:51:25] 2025-11-24 20:47:41,574 | INFO     | all payload control threads have been joined
[2025-11-24 21:51:25] 2025-11-24 20:47:41,649 | INFO     | [job] retrieve thread has finished
[2025-11-24 21:51:25] 2025-11-24 20:47:41,836 | INFO     | [job] control thread has finished
[2025-11-24 21:51:25] 2025-11-24 20:47:41,887 | INFO     | [job] job monitor thread has finished
[2025-11-24 21:51:25] 2025-11-24 20:47:41,955 | INFO     | [payload] validate_post thread has finished
[2025-11-24 21:51:25] 2025-11-24 20:47:42,049 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 21:51:25] 2025-11-24 20:47:42,230 | INFO     | [data] control thread has finished
[2025-11-24 21:51:25] 2025-11-24 20:47:42,289 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 21:51:25] 2025-11-24 20:47:42,378 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 21:51:25] 2025-11-24 20:47:42,472 | INFO     | [job] validate thread has finished
[2025-11-24 21:51:25] 2025-11-24 20:47:42,476 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 21:51:25] 2025-11-24 20:47:42,579 | INFO     | [payload] control thread has finished
[2025-11-24 21:51:25] 2025-11-24 20:47:42,655 | INFO     | [data] copytool_out thread has finished
[2025-11-24 21:51:25] 2025-11-24 20:47:42,667 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 21:51:25] 2025-11-24 20:47:42,963 | INFO     | [data] copytool_in thread has finished
[2025-11-24 21:51:25] 2025-11-24 20:47:43,007 | INFO     | [payload] failed_post thread has finished
[2025-11-24 21:51:25] 2025-11-24 20:47:43,130 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 21:51:25] 2025-11-24 20:47:44,135 | INFO     | [job] queue monitor thread has finished
[2025-11-24 21:51:25] 2025-11-24 20:47:46,295 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 21:51:25] 2025-11-24 20:48:10,347 | INFO     | PID=3468721 has CPU usage=10.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-24 21:51:25] 2025-11-24 20:48:10,347 | INFO     | .. there are 4 such processes running
[2025-11-24 21:51:25] 2025-11-24 20:48:10,347 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 21:51:25] 2025-11-24 20:48:10,347 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 21:51:25] 2025-11-24 20:48:10,347 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 21:51:25] 2025-11-24 20:48:23,731 | INFO     | [monitor] cgroup control has ended
[2025-11-24 21:51:25] 2025-11-24 20:48:24,269 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22802488846144)>', '<ExcThread(monitor, started 22801777944320)>']
[2025-11-24 21:51:25] 2025-11-24 20:48:24,408 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 21:51:25] 2025-11-24 20:48:24,408 | INFO     | [monitor] control thread has ended
[2025-11-24 21:51:25] 2025-11-24 20:48:29,292 | INFO     | all workflow threads have been joined
[2025-11-24 21:51:25] 2025-11-24 20:48:29,292 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 21:51:25] 2025-11-24 20:48:29,292 | INFO     | traces error code: 0
[2025-11-24 21:51:25] 2025-11-24 20:48:29,293 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 21:51:25] 2025-11-24 20:48:29,502 [wrapper] ==== pilot stdout END ====
[2025-11-24 21:51:25] 2025-11-24 20:48:29,508 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 21:51:25] 2025-11-24 20:48:29,511 [wrapper] pilotpid: 3468721
[2025-11-24 21:51:25] 2025-11-24 20:48:29,514 [wrapper] Pilot exit status: 0
[2025-11-24 21:51:25] 2025-11-24 20:48:29,525 [wrapper] pandaids: 6893850769
[2025-11-24 21:51:25] 2025-11-24 20:48:29,587 [wrapper] cleanup supervisor_pilot  299832 3468722
[2025-11-24 21:51:25] 2025-11-24 20:48:29,590 [wrapper] Test setup, not cleaning
[2025-11-24 21:51:25] 2025-11-24 20:48:29,593 [wrapper] apfmon messages muted
[2025-11-24 21:51:25] 2025-11-24 20:48:29,596 [wrapper] ==== wrapper stdout END ====
[2025-11-24 21:51:25] 2025-11-24 20:48:29,598 [wrapper] ==== wrapper stderr END ====
[2025-11-24 21:51:25]  *** Error codes and diagnostics ***
[2025-11-24 21:51:25]     "exeErrorCode": 0,
[2025-11-24 21:51:25]     "exeErrorDiag": "",
[2025-11-24 21:51:25]     "pilotErrorCode": 0,
[2025-11-24 21:51:25]     "pilotErrorDiag": "",
[2025-11-24 21:51:25]  *** Listing of results directory ***
[2025-11-24 21:51:25] total 1328008
[2025-11-24 21:51:25] -rw-r--r-- 1 boinc boinc    576529 Nov 20 12:09 pilot3.tar.gz
[2025-11-24 21:51:25] -rw-r--r-- 1 boinc boinc      5112 Nov 20 12:23 queuedata.json
[2025-11-24 21:51:25] -rwx------ 1 boinc boinc     36292 Nov 20 12:25 runpilot2-wrapper.sh
[2025-11-24 21:51:25] -rw-r--r-- 1 boinc boinc       100 Nov 24 02:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 21:51:25] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 02:20 run_atlas
[2025-11-24 21:51:25] -rw-r--r-- 1 boinc boinc       105 Nov 24 02:20 job.xml
[2025-11-24 21:51:25] -rw-r--r-- 1 boinc boinc      6635 Nov 24 02:20 init_data.xml
[2025-11-24 21:51:25] -rw-r--r-- 2 boinc boinc 407708447 Nov 24 02:20 EVNT.47493127._000340.pool.root.1
[2025-11-24 21:51:25] -rw-r--r-- 2 boinc boinc     15847 Nov 24 02:20 start_atlas.sh
[2025-11-24 21:51:25] drwxrwx--x 2 boinc boinc      4096 Nov 24 02:20 shared
[2025-11-24 21:51:25] -rw-r--r-- 2 boinc boinc    590103 Nov 24 02:20 input.tar.gz
[2025-11-24 21:51:25] -rw-r--r-- 1 boinc boinc         0 Nov 24 02:20 boinc_lockfile
[2025-11-24 21:51:25] -rw-r--r-- 1 boinc boinc      2785 Nov 24 02:20 pandaJob.out
[2025-11-24 21:51:25] -rw------- 1 boinc boinc    989786 Nov 24 02:20 agis_schedconf.cvmfs.json
[2025-11-24 21:51:25] drwx------ 5 boinc boinc      4096 Nov 24 02:20 pilot3
[2025-11-24 21:51:25] -rw-r--r-- 1 boinc boinc       531 Nov 24 21:37 boinc_task_state.xml
[2025-11-24 21:51:25] -rw------- 1 boinc boinc 925041704 Nov 24 21:46 HITS.47523449._003394.pool.root.1
[2025-11-24 21:51:25] -rw------- 1 boinc boinc        95 Nov 24 21:47 pilot_heartbeat.json
[2025-11-24 21:51:25] -rw------- 1 boinc boinc      1046 Nov 24 21:47 memory_monitor_summary.json
[2025-11-24 21:51:25] -rw------- 1 boinc boinc   1516227 Nov 24 21:47 agis_ddmendpoints.agis.ALL.json
[2025-11-24 21:51:25] -rw------- 1 boinc boinc   1852353 Nov 24 21:47 log.47523449._003394.job.log.tgz.1
[2025-11-24 21:51:25] -rw------- 1 boinc boinc      8631 Nov 24 21:47 heartbeat.json
[2025-11-24 21:51:25] -rw------- 1 boinc boinc      5020 Nov 24 21:48 pilotlog.txt
[2025-11-24 21:51:25] -rw------- 1 boinc boinc   9754390 Nov 24 21:48 log.47523449._003394.job.log.1
[2025-11-24 21:51:25] -rw------- 1 boinc boinc       353 Nov 24 21:48 output.list
[2025-11-24 21:51:25] -rw-r--r-- 1 boinc boinc       620 Nov 24 21:48 runtime_log
[2025-11-24 21:51:25] -rw------- 1 boinc boinc  11622400 Nov 24 21:48 result.tar.gz
[2025-11-24 21:51:25] -rw-r--r-- 1 boinc boinc      9206 Nov 24 21:48 runtime_log.err
[2025-11-24 21:51:25] -rw------- 1 boinc boinc       671 Nov 24 21:48 87aMDmsxHg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7cHKDmLizhVo.diag
[2025-11-24 21:51:25] -rw-r--r-- 1 boinc boinc        28 Nov 24 21:51 wrapper_checkpoint.txt
[2025-11-24 21:51:25] -rw-r--r-- 1 boinc boinc      8192 Nov 24 21:51 boinc_mmap_file
[2025-11-24 21:51:25] -rw-r--r-- 1 boinc boinc     21104 Nov 24 21:51 stderr.txt
[2025-11-24 21:51:25] HITS file was successfully produced:
[2025-11-24 21:51:25] -rw------- 1 boinc boinc 925041704 Nov 24 21:46 shared/HITS.pool.root.1
[2025-11-24 21:51:25]  *** Contents of shared directory: ***
[2025-11-24 21:51:25] total 1313476
[2025-11-24 21:51:25] -rw-r--r-- 2 boinc boinc 407708447 Nov 24 02:20 ATLAS.root_0
[2025-11-24 21:51:25] -rw-r--r-- 2 boinc boinc     15847 Nov 24 02:20 start_atlas.sh
[2025-11-24 21:51:25] -rw-r--r-- 2 boinc boinc    590103 Nov 24 02:20 input.tar.gz
[2025-11-24 21:51:25] -rw------- 1 boinc boinc 925041704 Nov 24 21:46 HITS.pool.root.1
[2025-11-24 21:51:25] -rw------- 1 boinc boinc  11622400 Nov 24 21:48 result.tar.gz
21:51:27 (3464961): run_atlas exited; CPU time 276593.496329
21:51:27 (3464961): called boinc_finish(0)

</stderr_txt>
]]>

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