Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:28:15 (1541394): wrapper (7.7.26015): starting
15:28:15 (1541394): wrapper: running run_atlas (--nthreads 4)
[2025-11-22 15:28:15] Arguments: --nthreads 4
[2025-11-22 15:28:15] Threads: 4
[2025-11-22 15:28:15] Checking for CVMFS
[2025-11-22 15:28:15] No cvmfs_config command found, will try listing directly
[2025-11-22 15:28:15] CVMFS is ok
[2025-11-22 15:28:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 15:28:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 15:28:15] Further information can be found at the LHC@home message board.
[2025-11-22 15:28:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 15:28:15] Checking for apptainer binary...
[2025-11-22 15:28:15] which: no apptainer in ((null))
[2025-11-22 15:28:15] apptainer is not installed, using version from CVMFS
[2025-11-22 15:28:15] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 15:28:16] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut09.grid.cesnet.cz
[2025-11-22 15:28:16] apptainer works
[2025-11-22 15:28:16] Set ATHENA_PROC_NUMBER=4
[2025-11-22 15:28:16] Set ATHENA_CORE_NUMBER=4
[2025-11-22 15:28:16] Starting ATLAS job with PandaID=6892549088
[2025-11-22 15:28:16] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 08:17:35]  *** The last 200 lines of the pilot log: ***
[2025-11-23 08:17:35] 2025-11-23 07:14:16,364 | INFO     | monitor loop #4335: job 0:6892549088 is in state 'finished'
[2025-11-23 08:17:35] 2025-11-23 07:14:16,364 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 08:17:35] 2025-11-23 07:14:17,628 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-23 08:17:35] 2025-11-23 07:14:17,638 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2707.673328125
[2025-11-23 08:17:35] 2025-11-23 07:14:17,650 | INFO     | using path: /scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6892549088/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 08:17:35] 2025-11-23 07:14:17,651 | INFO     | extracted standard info from prmon json
[2025-11-23 08:17:35] 2025-11-23 07:14:17,651 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 08:17:35] 2025-11-23 07:14:17,651 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 08:17:35] 2025-11-23 07:14:17,669 | INFO     | fitting pss+swap vs Time
[2025-11-23 08:17:35] 2025-11-23 07:14:17,670 | INFO     | sum of square deviations: 299962424190.0
[2025-11-23 08:17:35] 2025-11-23 07:14:17,690 | INFO     | sum of deviations: 810074129604.0001
[2025-11-23 08:17:35] 2025-11-23 07:14:17,691 | INFO     | mean x: 1763851870.0
[2025-11-23 08:17:35] 2025-11-23 07:14:17,691 | INFO     | mean y: 2288270.353892821
[2025-11-23 08:17:35] 2025-11-23 07:14:17,691 | INFO     | intersect: -4761144256.900206
[2025-11-23 08:17:35] 2025-11-23 07:14:17,692 | INFO     | chi2: 3.557673708589441
[2025-11-23 08:17:35] 2025-11-23 07:14:17,694 | INFO     | sum of square deviations: 295435902110.0
[2025-11-23 08:17:35] 2025-11-23 07:14:17,713 | INFO     | sum of deviations: 989994170491.0001
[2025-11-23 08:17:35] 2025-11-23 07:14:17,714 | INFO     | mean x: 1763851717.5
[2025-11-23 08:17:35] 2025-11-23 07:14:17,714 | INFO     | mean y: 2294327.8922764226
[2025-11-23 08:17:35] 2025-11-23 07:14:17,714 | INFO     | intersect: -5908303894.815851
[2025-11-23 08:17:35] 2025-11-23 07:14:17,715 | INFO     | chi2: 1.928132348112634
[2025-11-23 08:17:35] 2025-11-23 07:14:17,715 | INFO     | current chi2=1.928132348112634 (change=45.80356418135078 %)
[2025-11-23 08:17:35] 2025-11-23 07:14:17,717 | INFO     | sum of square deviations: 290955148330.0
[2025-11-23 08:17:35] 2025-11-23 07:14:17,736 | INFO     | sum of deviations: 1006549026187.9991
[2025-11-23 08:17:35] 2025-11-23 07:14:17,736 | INFO     | mean x: 1763851565.0
[2025-11-23 08:17:35] 2025-11-23 07:14:17,736 | INFO     | mean y: 2294888.75587334
[2025-11-23 08:17:35] 2025-11-23 07:14:17,737 | INFO     | intersect: -6099687101.531076
[2025-11-23 08:17:35] 2025-11-23 07:14:17,738 | INFO     | chi2: 1.86208534103869
[2025-11-23 08:17:35] 2025-11-23 07:14:17,738 | INFO     | current chi2=1.86208534103869 (change=3.4254395004883684 %)
[2025-11-23 08:17:35] 2025-11-23 07:14:17,738 | INFO     | right removable region: 978
[2025-11-23 08:17:35] 2025-11-23 07:14:17,739 | INFO     | sum of square deviations: 295435902110.0
[2025-11-23 08:17:35] 2025-11-23 07:14:17,759 | INFO     | sum of deviations: 635622751496.4998
[2025-11-23 08:17:35] 2025-11-23 07:14:17,760 | INFO     | mean x: 1763852022.5
[2025-11-23 08:17:35] 2025-11-23 07:14:17,760 | INFO     | mean y: 2294137.31402439
[2025-11-23 08:17:35] 2025-11-23 07:14:17,760 | INFO     | intersect: -3792588162.9308486
[2025-11-23 08:17:35] 2025-11-23 07:14:17,761 | INFO     | chi2: 1.825698620371337
[2025-11-23 08:17:35] 2025-11-23 07:14:17,761 | INFO     | current chi2=1.825698620371337 (change=48.68279752683682 %)
[2025-11-23 08:17:35] 2025-11-23 07:14:17,763 | INFO     | sum of square deviations: 290955148330.0
[2025-11-23 08:17:35] 2025-11-23 07:14:17,782 | INFO     | sum of deviations: 623517061736.0
[2025-11-23 08:17:35] 2025-11-23 07:14:17,783 | INFO     | mean x: 1763852175.0
[2025-11-23 08:17:35] 2025-11-23 07:14:17,783 | INFO     | mean y: 2294548.864147089
[2025-11-23 08:17:35] 2025-11-23 07:14:17,783 | INFO     | intersect: -3777641746.489781
[2025-11-23 08:17:35] 2025-11-23 07:14:17,784 | INFO     | chi2: 1.824662402359794
[2025-11-23 08:17:35] 2025-11-23 07:14:17,784 | INFO     | current chi2=1.824662402359794 (change=0.05675734209254737 %)
[2025-11-23 08:17:35] 2025-11-23 07:14:17,784 | INFO     | left removable region: 20
[2025-11-23 08:17:35] 2025-11-23 07:14:17,786 | INFO     | sum of square deviations: 272630523819.5
[2025-11-23 08:17:35] 2025-11-23 07:14:17,805 | INFO     | sum of deviations: 815598236229.0001
[2025-11-23 08:17:35] 2025-11-23 07:14:17,805 | INFO     | mean x: 1763852144.5
[2025-11-23 08:17:35] 2025-11-23 07:14:17,805 | INFO     | mean y: 2301262.45302714
[2025-11-23 08:17:35] 2025-11-23 07:14:17,805 | INFO     | intersect: -5274417858.606899
[2025-11-23 08:17:35] 2025-11-23 07:14:17,807 | INFO     | chi2: 0.10791136553210368
[2025-11-23 08:17:35] 2025-11-23 07:14:17,807 | INFO     | current memory leak: 2.99 B/s (using 958 data points, chi2=0.11)
[2025-11-23 08:17:35] 2025-11-23 07:14:17,808 | INFO     | could have reported an average CPU frequency of 2646 MHz (37 samples)
[2025-11-23 08:17:35] 2025-11-23 07:14:17,808 | INFO     | ..............................
[2025-11-23 08:17:35] 2025-11-23 07:14:17,808 | INFO     | . Timing measurements:
[2025-11-23 08:17:35] 2025-11-23 07:14:17,808 | INFO     | . get job = 0 s
[2025-11-23 08:17:35] 2025-11-23 07:14:17,808 | INFO     | . initial setup = 1 s
[2025-11-23 08:17:35] 2025-11-23 07:14:17,809 | INFO     | . payload setup = 7 s
[2025-11-23 08:17:35] 2025-11-23 07:14:17,809 | INFO     | . stage-in = 0 s
[2025-11-23 08:17:35] 2025-11-23 07:14:17,809 | INFO     | . payload execution = 60311 s
[2025-11-23 08:17:35] 2025-11-23 07:14:17,809 | INFO     | . stage-out = 2 s
[2025-11-23 08:17:35] 2025-11-23 07:14:17,809 | INFO     | . log creation = 0 s
[2025-11-23 08:17:35] 2025-11-23 07:14:17,809 | INFO     | ..............................
[2025-11-23 08:17:35] 2025-11-23 07:14:18,104 | INFO     | time since job start (60351s) is within the limit (172800.0s)
[2025-11-23 08:17:35] 2025-11-23 07:14:18,138 | INFO     | 
[2025-11-23 08:17:35] 2025-11-23 07:14:18,138 | INFO     | job summary report
[2025-11-23 08:17:35] 2025-11-23 07:14:18,138 | INFO     | --------------------------------------------------
[2025-11-23 08:17:35] 2025-11-23 07:14:18,138 | INFO     | PanDA job id: 6892549088
[2025-11-23 08:17:35] 2025-11-23 07:14:18,138 | INFO     | task id: 47493029
[2025-11-23 08:17:35] 2025-11-23 07:14:18,138 | INFO     | errors: (none)
[2025-11-23 08:17:35] 2025-11-23 07:14:18,139 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 08:17:35] 2025-11-23 07:14:18,139 | INFO     | pilot state: finished 
[2025-11-23 08:17:35] 2025-11-23 07:14:18,139 | INFO     | transexitcode: 0
[2025-11-23 08:17:35] 2025-11-23 07:14:18,139 | INFO     | exeerrorcode: 0
[2025-11-23 08:17:35] 2025-11-23 07:14:18,139 | INFO     | exeerrordiag: 
[2025-11-23 08:17:35] 2025-11-23 07:14:18,139 | INFO     | exitcode: 0
[2025-11-23 08:17:35] 2025-11-23 07:14:18,139 | INFO     | exitmsg: OK
[2025-11-23 08:17:35] 2025-11-23 07:14:18,139 | INFO     | cpuconsumptiontime: 239066 s
[2025-11-23 08:17:35] 2025-11-23 07:14:18,139 | INFO     | nevents: 1000
[2025-11-23 08:17:35] 2025-11-23 07:14:18,139 | INFO     | neventsw: 0
[2025-11-23 08:17:35] 2025-11-23 07:14:18,139 | INFO     | pid: 1552041
[2025-11-23 08:17:35] 2025-11-23 07:14:18,139 | INFO     | pgrp: 1552041
[2025-11-23 08:17:35] 2025-11-23 07:14:18,140 | INFO     | corecount: 4
[2025-11-23 08:17:35] 2025-11-23 07:14:18,140 | INFO     | event service: False
[2025-11-23 08:17:35] 2025-11-23 07:14:18,140 | INFO     | sizes: {0: 2298636, 1: 2298835, 6: 2299097, 11: 2299125, 60323: 2351347, 60326: 2360363, 60329: 2360547, 60334: 2360793}
[2025-11-23 08:17:35] 2025-11-23 07:14:18,140 | INFO     | --------------------------------------------------
[2025-11-23 08:17:35] 2025-11-23 07:14:18,140 | INFO     | 
[2025-11-23 08:17:35] 2025-11-23 07:14:18,140 | INFO     | executing command: ls -lF /scratch/boinc/var/slot56/slots/0
[2025-11-23 08:17:35] 2025-11-23 07:14:18,160 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 08:17:35] 2025-11-23 07:14:18,161 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 08:17:35] 2025-11-23 07:14:18,161 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 08:17:35] 2025-11-23 07:14:18,161 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 08:17:35] 2025-11-23 07:14:18,161 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 08:17:35] 2025-11-23 07:14:18,161 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 08:17:35] 2025-11-23 07:14:18,161 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 08:17:35] 2025-11-23 07:14:18,161 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 08:17:35] 2025-11-23 07:14:18,161 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 08:17:35] 2025-11-23 07:14:18,161 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 08:17:35] 2025-11-23 07:14:18,162 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 08:17:35] 2025-11-23 07:14:18,162 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 08:17:35] 2025-11-23 07:14:18,162 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 08:17:35] 2025-11-23 07:14:18,162 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 08:17:35] 2025-11-23 07:14:18,162 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 08:17:35] 2025-11-23 07:14:18,162 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 08:17:35] 2025-11-23 07:14:18,162 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 08:17:35] 2025-11-23 07:14:18,162 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 08:17:35] 2025-11-23 07:14:18,162 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 08:17:35] 2025-11-23 07:14:18,162 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 08:17:35] 2025-11-23 07:14:18,163 | INFO     | job 6892549088 has completed (purged errors)
[2025-11-23 08:17:35] 2025-11-23 07:14:18,163 | INFO     | overall cleanup function is called
[2025-11-23 08:17:35] 2025-11-23 07:14:19,176 | INFO     | --- collectZombieJob: --- 10, [1552041]
[2025-11-23 08:17:35] 2025-11-23 07:14:19,176 | INFO     | zombie collector waiting for pid 1552041
[2025-11-23 08:17:35] 2025-11-23 07:14:19,176 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 08:17:35] 2025-11-23 07:14:19,176 | INFO     | collected zombie processes
[2025-11-23 08:17:35] 2025-11-23 07:14:19,176 | INFO     | will attempt to kill all subprocesses of pid=1552041
[2025-11-23 08:17:35] 2025-11-23 07:14:19,555 | INFO     | process IDs to be killed: [1552041] (in reverse order)
[2025-11-23 08:17:35] 2025-11-23 07:14:19,670 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 08:17:35] 2025-11-23 07:14:19,671 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 08:17:35] 2025-11-23 07:14:19,684 | INFO     | did not find any defunct processes belonging to 1552041
[2025-11-23 08:17:35] 2025-11-23 07:14:19,697 | INFO     | did not find any defunct processes belonging to 1552041
[2025-11-23 08:17:35] 2025-11-23 07:14:19,698 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 08:17:35] 2025-11-23 07:14:19,699 | INFO     | ready for new job
[2025-11-23 08:17:35] 2025-11-23 07:14:19,699 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 08:17:35] 2025-11-23 07:14:19,704 | INFO     | ***************************************
[2025-11-23 08:17:35] 2025-11-23 07:14:19,705 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 08:17:35] 2025-11-23 07:14:19,705 | INFO     | ***************************************
[2025-11-23 08:17:35] 2025-11-23 07:14:19,705 | INFO     | 
[2025-11-23 08:17:35] 2025-11-23 07:14:19,709 | INFO     | architecture information:
[2025-11-23 08:17:35] 2025-11-23 07:14:19,709 | INFO     | executing command: cat /etc/os-release
[2025-11-23 08:17:35] 2025-11-23 07:14:19,725 | INFO     | cat /etc/os-release:
[2025-11-23 08:17:35] NAME="CentOS Linux"
[2025-11-23 08:17:35] VERSION="7 (Core)"
[2025-11-23 08:17:35] ID="centos"
[2025-11-23 08:17:35] ID_LIKE="rhel fedora"
[2025-11-23 08:17:35] VERSION_ID="7"
[2025-11-23 08:17:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 08:17:35] ANSI_COLOR="0;31"
[2025-11-23 08:17:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 08:17:35] HOME_URL="https://www.centos.org/"
[2025-11-23 08:17:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 08:17:35] 
[2025-11-23 08:17:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 08:17:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 08:17:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 08:17:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 08:17:35] 
[2025-11-23 08:17:35] 2025-11-23 07:14:19,725 | INFO     | ***************************************
[2025-11-23 08:17:35] 2025-11-23 07:14:20,228 | INFO     | executing command: df -mP /scratch/boinc/var/slot56/slots/0
[2025-11-23 08:17:35] 2025-11-23 07:14:20,246 | INFO     | sufficient remaining disk space (685057769472 B)
[2025-11-23 08:17:35] 2025-11-23 07:14:20,247 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 08:17:35] 2025-11-23 07:14:20,247 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 08:17:35] 2025-11-23 07:14:20,247 | INFO     | update_server=False
[2025-11-23 08:17:35] 2025-11-23 07:14:20,247 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 08:17:35] 2025-11-23 07:14:20,248 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 08:17:35] 2025-11-23 07:14:20,248 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 08:17:35] 2025-11-23 07:14:20,248 | INFO     | aborting loop
[2025-11-23 08:17:35] 2025-11-23 07:14:20,893 | INFO     | all data control threads have been joined
[2025-11-23 08:17:35] 2025-11-23 07:14:20,989 | INFO     | all payload control threads have been joined
[2025-11-23 08:17:35] 2025-11-23 07:14:21,201 | INFO     | all job control threads have been joined
[2025-11-23 08:17:35] 2025-11-23 07:14:21,252 | INFO     | [job] retrieve thread has finished
[2025-11-23 08:17:35] 2025-11-23 07:14:21,253 | INFO     | [job] job monitor thread has finished
[2025-11-23 08:17:35] 2025-11-23 07:14:21,464 | INFO     | [job] validate thread has finished
[2025-11-23 08:17:35] 2025-11-23 07:14:21,510 | INFO     | [payload] failed_post thread has finished
[2025-11-23 08:17:35] 2025-11-23 07:14:21,548 | INFO     | [data] copytool_in thread has finished
[2025-11-23 08:17:35] 2025-11-23 07:14:21,898 | INFO     | [data] control thread has finished
[2025-11-23 08:17:35] 2025-11-23 07:14:21,993 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 08:17:35] 2025-11-23 07:14:21,994 | INFO     | [payload] control thread has finished
[2025-11-23 08:17:35] 2025-11-23 07:14:22,151 | INFO     | [payload] validate_post thread has finished
[2025-11-23 08:17:35] 2025-11-23 07:14:22,203 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 08:17:35] 2025-11-23 07:14:22,206 | INFO     | [job] control thread has finished
[2025-11-23 08:17:35] 2025-11-23 07:14:22,253 | INFO     | [data] copytool_out thread has finished
[2025-11-23 08:17:35] 2025-11-23 07:14:22,556 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 08:17:35] 2025-11-23 07:14:22,639 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 08:17:35] 2025-11-23 07:14:22,916 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 08:17:35] 2025-11-23 07:14:23,427 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 08:17:35] 2025-11-23 07:14:23,921 | INFO     | [job] queue monitor thread has finished
[2025-11-23 08:17:35] 2025-11-23 07:14:27,432 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 08:17:35] 2025-11-23 07:14:51,644 | INFO     | PID=1545152 has CPU usage=8.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 08:17:35] 2025-11-23 07:14:51,644 | INFO     | .. there are 5 such processes running
[2025-11-23 08:17:35] 2025-11-23 07:14:51,644 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 08:17:35] 2025-11-23 07:14:51,644 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 08:17:35] 2025-11-23 07:14:51,644 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 08:17:35] 2025-11-23 07:15:04,382 | INFO     | [monitor] cgroup control has ended
[2025-11-23 08:17:35] 2025-11-23 07:15:05,090 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23387429902144)>', '<ExcThread(monitor, started 23387193706240)>']
[2025-11-23 08:17:35] 2025-11-23 07:15:05,711 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 08:17:35] 2025-11-23 07:15:05,711 | INFO     | [monitor] control thread has ended
[2025-11-23 08:17:35] 2025-11-23 07:15:10,115 | INFO     | all workflow threads have been joined
[2025-11-23 08:17:35] 2025-11-23 07:15:10,115 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 08:17:35] 2025-11-23 07:15:10,115 | INFO     | traces error code: 0
[2025-11-23 08:17:35] 2025-11-23 07:15:10,116 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 08:17:35] 2025-11-23 07:15:10,271 [wrapper] ==== pilot stdout END ====
[2025-11-23 08:17:35] 2025-11-23 07:15:10,275 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 08:17:35] 2025-11-23 07:15:10,278 [wrapper] pilotpid: 1545152
[2025-11-23 08:17:35] 2025-11-23 07:15:10,281 [wrapper] Pilot exit status: 0
[2025-11-23 08:17:35] 2025-11-23 07:15:10,292 [wrapper] pandaids: 6892549088
[2025-11-23 08:17:35] 2025-11-23 07:15:10,370 [wrapper] cleanup supervisor_pilot 2415844 1545153
[2025-11-23 08:17:35] 2025-11-23 07:15:10,373 [wrapper] Test setup, not cleaning
[2025-11-23 08:17:35] 2025-11-23 07:15:10,376 [wrapper] apfmon messages muted
[2025-11-23 08:17:35] 2025-11-23 07:15:10,378 [wrapper] ==== wrapper stdout END ====
[2025-11-23 08:17:35] 2025-11-23 07:15:10,381 [wrapper] ==== wrapper stderr END ====
[2025-11-23 08:17:35]  *** Error codes and diagnostics ***
[2025-11-23 08:17:35]     "exeErrorCode": 0,
[2025-11-23 08:17:35]     "exeErrorDiag": "",
[2025-11-23 08:17:35]     "pilotErrorCode": 0,
[2025-11-23 08:17:35]     "pilotErrorDiag": "",
[2025-11-23 08:17:35]  *** Listing of results directory ***
[2025-11-23 08:17:35] total 1311988
[2025-11-23 08:17:35] -rw-r--r-- 1 boinc boinc    576529 Nov 19 09:32 pilot3.tar.gz
[2025-11-23 08:17:35] -rwx------ 1 boinc boinc     36292 Nov 19 09:48 runpilot2-wrapper.sh
[2025-11-23 08:17:35] -rw-r--r-- 1 boinc boinc      5112 Nov 19 09:48 queuedata.json
[2025-11-23 08:17:35] -rw-r--r-- 1 boinc boinc       100 Nov 22 15:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 08:17:35] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 15:28 run_atlas
[2025-11-23 08:17:35] -rw-r--r-- 1 boinc boinc       105 Nov 22 15:28 job.xml
[2025-11-23 08:17:35] -rw-r--r-- 1 boinc boinc      6634 Nov 22 15:28 init_data.xml
[2025-11-23 08:17:35] -rw-r--r-- 2 boinc boinc 410429039 Nov 22 15:28 EVNT.47493027._000352.pool.root.1
[2025-11-23 08:17:35] -rw-r--r-- 2 boinc boinc     15120 Nov 22 15:28 start_atlas.sh
[2025-11-23 08:17:35] drwxrwx--x 2 boinc boinc      4096 Nov 22 15:28 shared
[2025-11-23 08:17:35] -rw-r--r-- 2 boinc boinc    590101 Nov 22 15:28 input.tar.gz
[2025-11-23 08:17:35] -rw-r--r-- 1 boinc boinc         0 Nov 22 15:28 boinc_lockfile
[2025-11-23 08:17:35] -rw-r--r-- 1 boinc boinc      2773 Nov 22 15:28 pandaJob.out
[2025-11-23 08:17:35] -rw------- 1 boinc boinc    989768 Nov 22 15:28 agis_schedconf.cvmfs.json
[2025-11-23 08:17:35] drwx------ 5 boinc boinc      4096 Nov 22 15:28 pilot3
[2025-11-23 08:17:35] -rw-r--r-- 1 boinc boinc       531 Nov 23 08:06 boinc_task_state.xml
[2025-11-23 08:17:35] -rw------- 1 boinc boinc 908770999 Nov 23 08:13 HITS.47493029._003478.pool.root.1
[2025-11-23 08:17:35] -rw------- 1 boinc boinc      1044 Nov 23 08:14 memory_monitor_summary.json
[2025-11-23 08:17:35] -rw------- 1 boinc boinc   1526164 Nov 23 08:14 agis_ddmendpoints.agis.ALL.json
[2025-11-23 08:17:35] -rw------- 1 boinc boinc   1727823 Nov 23 08:14 log.47493029._003478.job.log.tgz.1
[2025-11-23 08:17:35] -rw------- 1 boinc boinc        95 Nov 23 08:14 pilot_heartbeat.json
[2025-11-23 08:17:35] -rw------- 1 boinc boinc      8644 Nov 23 08:14 heartbeat.json
[2025-11-23 08:17:35] -rw------- 1 boinc boinc      4833 Nov 23 08:15 pilotlog.txt
[2025-11-23 08:17:35] -rw------- 1 boinc boinc   8448433 Nov 23 08:15 log.47493029._003478.job.log.1
[2025-11-23 08:17:35] -rw------- 1 boinc boinc       353 Nov 23 08:15 output.list
[2025-11-23 08:17:35] -rw-r--r-- 1 boinc boinc       620 Nov 23 08:15 runtime_log
[2025-11-23 08:17:35] -rw------- 1 boinc boinc  10199040 Nov 23 08:15 result.tar.gz
[2025-11-23 08:17:35] -rw-r--r-- 1 boinc boinc      9070 Nov 23 08:15 runtime_log.err
[2025-11-23 08:17:35] -rw------- 1 boinc boinc       670 Nov 23 08:15 J0bKDm62sf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmf9FKDmuW3Rwn.diag
[2025-11-23 08:17:35] -rw-r--r-- 1 boinc boinc        28 Nov 23 08:17 wrapper_checkpoint.txt
[2025-11-23 08:17:35] -rw-r--r-- 1 boinc boinc      8192 Nov 23 08:17 boinc_mmap_file
[2025-11-23 08:17:35] -rw-r--r-- 1 boinc boinc     21049 Nov 23 08:17 stderr.txt
[2025-11-23 08:17:35] HITS file was successfully produced:
[2025-11-23 08:17:35] -rw------- 1 boinc boinc 908770999 Nov 23 08:13 shared/HITS.pool.root.1
[2025-11-23 08:17:35]  *** Contents of shared directory: ***
[2025-11-23 08:17:35] total 1298848
[2025-11-23 08:17:35] -rw-r--r-- 2 boinc boinc 410429039 Nov 22 15:28 ATLAS.root_0
[2025-11-23 08:17:35] -rw-r--r-- 2 boinc boinc     15120 Nov 22 15:28 start_atlas.sh
[2025-11-23 08:17:35] -rw-r--r-- 2 boinc boinc    590101 Nov 22 15:28 input.tar.gz
[2025-11-23 08:17:35] -rw------- 1 boinc boinc 908770999 Nov 23 08:13 HITS.pool.root.1
[2025-11-23 08:17:35] -rw------- 1 boinc boinc  10199040 Nov 23 08:15 result.tar.gz
08:17:37 (1541394): run_atlas exited; CPU time 241334.316125
08:17:37 (1541394): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN