Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:57:42 (2725747): wrapper (7.7.26015): starting
19:57:42 (2725747): wrapper: running run_atlas (--nthreads 4)
[2025-11-23 19:57:42] Arguments: --nthreads 4
[2025-11-23 19:57:42] Threads: 4
[2025-11-23 19:57:42] Checking for CVMFS
[2025-11-23 19:57:42] No cvmfs_config command found, will try listing directly
[2025-11-23 19:57:42] CVMFS is ok
[2025-11-23 19:57:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 19:57:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 19:57:42] Further information can be found at the LHC@home message board.
[2025-11-23 19:57:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 19:57:42] Checking for apptainer binary...
[2025-11-23 19:57:42] which: no apptainer in ((null))
[2025-11-23 19:57:42] apptainer is not installed, using version from CVMFS
[2025-11-23 19:57:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 19:57:43] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot104/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2025-11-23 19:57:43] apptainer works
[2025-11-23 19:57:43] Set ATHENA_PROC_NUMBER=4
[2025-11-23 19:57:43] Set ATHENA_CORE_NUMBER=4
[2025-11-23 19:57:43] Starting ATLAS job with PandaID=6892547031
[2025-11-23 19:57:43] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot104/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 13:00:39]  *** The last 200 lines of the pilot log: ***
[2025-11-24 13:00:39] 2025-11-24 11:57:54,542 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 13:00:39] 2025-11-24 11:57:54,566 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2696.9339218749988
[2025-11-24 13:00:39] 2025-11-24 11:57:54,592 | INFO     | using path: /scratch/boinc/var/slot104/slots/0/PanDA_Pilot-6892547031/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 13:00:39] 2025-11-24 11:57:54,593 | INFO     | extracted standard info from prmon json
[2025-11-24 13:00:39] 2025-11-24 11:57:54,593 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 13:00:39] 2025-11-24 11:57:54,593 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 13:00:39] 2025-11-24 11:57:54,612 | INFO     | fitting pss+swap vs Time
[2025-11-24 13:00:39] 2025-11-24 11:57:54,615 | INFO     | sum of square deviations: 312884223720.25323
[2025-11-24 13:00:39] 2025-11-24 11:57:54,641 | INFO     | sum of deviations: 826783485161.8519
[2025-11-24 13:00:39] 2025-11-24 11:57:54,641 | INFO     | mean x: 1763954873.0687935
[2025-11-24 13:00:39] 2025-11-24 11:57:54,641 | INFO     | mean y: 2273644.1326021934
[2025-11-24 13:00:39] 2025-11-24 11:57:54,641 | INFO     | intersect: -4658903388.967024
[2025-11-24 13:00:39] 2025-11-24 11:57:54,643 | INFO     | chi2: 4.184647413783283
[2025-11-24 13:00:39] 2025-11-24 11:57:54,644 | INFO     | sum of square deviations: 308228334212.7296
[2025-11-24 13:00:39] 2025-11-24 11:57:54,667 | INFO     | sum of deviations: 1035617121889.4814
[2025-11-24 13:00:39] 2025-11-24 11:57:54,667 | INFO     | mean x: 1763954720.5691383
[2025-11-24 13:00:39] 2025-11-24 11:57:54,668 | INFO     | mean y: 2280478.3987975954
[2025-11-24 13:00:39] 2025-11-24 11:57:54,668 | INFO     | intersect: -5924435232.293742
[2025-11-24 13:00:39] 2025-11-24 11:57:54,669 | INFO     | chi2: 2.0559936411063373
[2025-11-24 13:00:39] 2025-11-24 11:57:54,669 | INFO     | current chi2=2.0559936411063373 (change=50.86817507409683 %)
[2025-11-24 13:00:39] 2025-11-24 11:57:54,670 | INFO     | sum of square deviations: 303618803423.34344
[2025-11-24 13:00:39] 2025-11-24 11:57:54,693 | INFO     | sum of deviations: 1054684343412.0927
[2025-11-24 13:00:39] 2025-11-24 11:57:54,693 | INFO     | mean x: 1763954568.0684793
[2025-11-24 13:00:39] 2025-11-24 11:57:54,693 | INFO     | mean y: 2281106.9103726083
[2025-11-24 13:00:39] 2025-11-24 11:57:54,693 | INFO     | intersect: -6125189406.956455
[2025-11-24 13:00:39] 2025-11-24 11:57:54,694 | INFO     | chi2: 1.9864960625135764
[2025-11-24 13:00:39] 2025-11-24 11:57:54,694 | INFO     | current chi2=1.9864960625135764 (change=3.3802428764013133 %)
[2025-11-24 13:00:39] 2025-11-24 11:57:54,695 | INFO     | right removable region: 992
[2025-11-24 13:00:39] 2025-11-24 11:57:54,696 | INFO     | sum of square deviations: 308228292122.7297
[2025-11-24 13:00:39] 2025-11-24 11:57:54,718 | INFO     | sum of deviations: 646047715335.954
[2025-11-24 13:00:39] 2025-11-24 11:57:54,718 | INFO     | mean x: 1763955025.5691383
[2025-11-24 13:00:39] 2025-11-24 11:57:54,719 | INFO     | mean y: 2279553.6673346693
[2025-11-24 13:00:39] 2025-11-24 11:57:54,719 | INFO     | intersect: -3694977133.4980116
[2025-11-24 13:00:39] 2025-11-24 11:57:54,720 | INFO     | chi2: 2.3640385185705104
[2025-11-24 13:00:39] 2025-11-24 11:57:54,720 | INFO     | current chi2=2.3640385185705104 (change=43.50686486073112 %)
[2025-11-24 13:00:39] 2025-11-24 11:57:54,721 | INFO     | sum of square deviations: 303618780000.2054
[2025-11-24 13:00:39] 2025-11-24 11:57:54,744 | INFO     | sum of deviations: 606691343213.1312
[2025-11-24 13:00:39] 2025-11-24 11:57:54,744 | INFO     | mean x: 1763955178.0694864
[2025-11-24 13:00:39] 2025-11-24 11:57:54,744 | INFO     | mean y: 2280855.2155085597
[2025-11-24 13:00:39] 2025-11-24 11:57:54,744 | INFO     | intersect: -3522456107.2016745
[2025-11-24 13:00:39] 2025-11-24 11:57:54,745 | INFO     | chi2: 2.326972384477843
[2025-11-24 13:00:39] 2025-11-24 11:57:54,746 | INFO     | current chi2=2.326972384477843 (change=1.567915827153301 %)
[2025-11-24 13:00:39] 2025-11-24 11:57:54,746 | INFO     | left removable region: 20
[2025-11-24 13:00:39] 2025-11-24 11:57:54,747 | INFO     | sum of square deviations: 284760514282.2429
[2025-11-24 13:00:39] 2025-11-24 11:57:54,769 | INFO     | sum of deviations: 775542668941.2249
[2025-11-24 13:00:39] 2025-11-24 11:57:54,769 | INFO     | mean x: 1763955147.569959
[2025-11-24 13:00:39] 2025-11-24 11:57:54,770 | INFO     | mean y: 2290380.356995885
[2025-11-24 13:00:39] 2025-11-24 11:57:54,770 | INFO     | intersect: -4801825409.668199
[2025-11-24 13:00:39] 2025-11-24 11:57:54,771 | INFO     | chi2: 0.09651902655886915
[2025-11-24 13:00:39] 2025-11-24 11:57:54,771 | INFO     | current memory leak: 2.72 B/s (using 972 data points, chi2=0.10)
[2025-11-24 13:00:39] 2025-11-24 11:57:54,773 | INFO     | could have reported an average CPU frequency of 2666 MHz (37 samples)
[2025-11-24 13:00:39] 2025-11-24 11:57:54,773 | INFO     | ..............................
[2025-11-24 13:00:39] 2025-11-24 11:57:54,773 | INFO     | . Timing measurements:
[2025-11-24 13:00:39] 2025-11-24 11:57:54,773 | INFO     | . get job = 0 s
[2025-11-24 13:00:39] 2025-11-24 11:57:54,773 | INFO     | . initial setup = 1 s
[2025-11-24 13:00:39] 2025-11-24 11:57:54,773 | INFO     | . payload setup = 9 s
[2025-11-24 13:00:39] 2025-11-24 11:57:54,773 | INFO     | . stage-in = 0 s
[2025-11-24 13:00:39] 2025-11-24 11:57:54,774 | INFO     | . payload execution = 61150 s
[2025-11-24 13:00:39] 2025-11-24 11:57:54,774 | INFO     | . stage-out = 2 s
[2025-11-24 13:00:39] 2025-11-24 11:57:54,774 | INFO     | . log creation = 1 s
[2025-11-24 13:00:39] 2025-11-24 11:57:54,774 | INFO     | ..............................
[2025-11-24 13:00:39] 2025-11-24 11:57:54,877 | INFO     | 
[2025-11-24 13:00:39] 2025-11-24 11:57:54,877 | INFO     | job summary report
[2025-11-24 13:00:39] 2025-11-24 11:57:54,877 | INFO     | --------------------------------------------------
[2025-11-24 13:00:39] 2025-11-24 11:57:54,878 | INFO     | PanDA job id: 6892547031
[2025-11-24 13:00:39] 2025-11-24 11:57:54,878 | INFO     | task id: 47493029
[2025-11-24 13:00:39] 2025-11-24 11:57:54,878 | INFO     | errors: (none)
[2025-11-24 13:00:39] 2025-11-24 11:57:54,878 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 13:00:39] 2025-11-24 11:57:54,878 | INFO     | pilot state: finished 
[2025-11-24 13:00:39] 2025-11-24 11:57:54,878 | INFO     | transexitcode: 0
[2025-11-24 13:00:39] 2025-11-24 11:57:54,878 | INFO     | exeerrorcode: 0
[2025-11-24 13:00:39] 2025-11-24 11:57:54,878 | INFO     | exeerrordiag: 
[2025-11-24 13:00:39] 2025-11-24 11:57:54,878 | INFO     | exitcode: 0
[2025-11-24 13:00:39] 2025-11-24 11:57:54,878 | INFO     | exitmsg: OK
[2025-11-24 13:00:39] 2025-11-24 11:57:54,878 | INFO     | cpuconsumptiontime: 237277 s
[2025-11-24 13:00:39] 2025-11-24 11:57:54,879 | INFO     | nevents: 1000
[2025-11-24 13:00:39] 2025-11-24 11:57:54,879 | INFO     | neventsw: 0
[2025-11-24 13:00:39] 2025-11-24 11:57:54,879 | INFO     | pid: 2748608
[2025-11-24 13:00:39] 2025-11-24 11:57:54,879 | INFO     | pgrp: 2748608
[2025-11-24 13:00:39] 2025-11-24 11:57:54,879 | INFO     | corecount: 4
[2025-11-24 13:00:39] 2025-11-24 11:57:54,879 | INFO     | event service: False
[2025-11-24 13:00:39] 2025-11-24 11:57:54,879 | INFO     | sizes: {0: 2298802, 7: 2299064, 11: 2299092, 61163: 2354423, 61164: 2354422, 61166: 2364287, 61170: 2364471, 61180: 2364717}
[2025-11-24 13:00:39] 2025-11-24 11:57:54,879 | INFO     | --------------------------------------------------
[2025-11-24 13:00:39] 2025-11-24 11:57:54,879 | INFO     | 
[2025-11-24 13:00:39] 2025-11-24 11:57:54,879 | INFO     | executing command: ls -lF /scratch/boinc/var/slot104/slots/0
[2025-11-24 13:00:39] 2025-11-24 11:57:54,914 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 13:00:39] 2025-11-24 11:57:54,914 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 13:00:39] 2025-11-24 11:57:54,914 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 13:00:39] 2025-11-24 11:57:54,915 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 13:00:39] 2025-11-24 11:57:54,915 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 13:00:39] 2025-11-24 11:57:54,915 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 13:00:39] 2025-11-24 11:57:54,915 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 13:00:39] 2025-11-24 11:57:54,915 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 13:00:39] 2025-11-24 11:57:54,915 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 13:00:39] 2025-11-24 11:57:54,915 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 13:00:39] 2025-11-24 11:57:54,915 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 13:00:39] 2025-11-24 11:57:54,915 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 13:00:39] 2025-11-24 11:57:54,915 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 13:00:39] 2025-11-24 11:57:54,916 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 13:00:39] 2025-11-24 11:57:54,916 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 13:00:39] 2025-11-24 11:57:54,916 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 13:00:39] 2025-11-24 11:57:54,916 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 13:00:39] 2025-11-24 11:57:54,916 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 13:00:39] 2025-11-24 11:57:54,916 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 13:00:39] 2025-11-24 11:57:54,916 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 13:00:39] 2025-11-24 11:57:54,916 | INFO     | job 6892547031 has completed (purged errors)
[2025-11-24 13:00:39] 2025-11-24 11:57:54,917 | INFO     | overall cleanup function is called
[2025-11-24 13:00:39] 2025-11-24 11:57:55,933 | INFO     | --- collectZombieJob: --- 10, [2748608]
[2025-11-24 13:00:39] 2025-11-24 11:57:55,934 | INFO     | zombie collector waiting for pid 2748608
[2025-11-24 13:00:39] 2025-11-24 11:57:55,934 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 13:00:39] 2025-11-24 11:57:55,934 | INFO     | collected zombie processes
[2025-11-24 13:00:39] 2025-11-24 11:57:55,934 | INFO     | will attempt to kill all subprocesses of pid=2748608
[2025-11-24 13:00:39] 2025-11-24 11:57:56,826 | INFO     | process IDs to be killed: [2748608] (in reverse order)
[2025-11-24 13:00:39] 2025-11-24 11:57:57,108 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 13:00:39] 2025-11-24 11:57:57,108 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 13:00:39] 2025-11-24 11:57:57,145 | INFO     | did not find any defunct processes belonging to 2748608
[2025-11-24 13:00:39] 2025-11-24 11:57:57,177 | INFO     | did not find any defunct processes belonging to 2748608
[2025-11-24 13:00:39] 2025-11-24 11:57:57,178 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 13:00:39] 2025-11-24 11:57:57,179 | INFO     | ready for new job
[2025-11-24 13:00:39] 2025-11-24 11:57:57,179 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 13:00:39] 2025-11-24 11:57:57,185 | INFO     | ***************************************
[2025-11-24 13:00:39] 2025-11-24 11:57:57,185 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 13:00:39] 2025-11-24 11:57:57,186 | INFO     | ***************************************
[2025-11-24 13:00:39] 2025-11-24 11:57:57,186 | INFO     | 
[2025-11-24 13:00:39] 2025-11-24 11:57:57,194 | INFO     | architecture information:
[2025-11-24 13:00:39] 2025-11-24 11:57:57,195 | INFO     | executing command: cat /etc/os-release
[2025-11-24 13:00:39] 2025-11-24 11:57:57,221 | INFO     | cat /etc/os-release:
[2025-11-24 13:00:39] NAME="CentOS Linux"
[2025-11-24 13:00:39] VERSION="7 (Core)"
[2025-11-24 13:00:39] ID="centos"
[2025-11-24 13:00:39] ID_LIKE="rhel fedora"
[2025-11-24 13:00:39] VERSION_ID="7"
[2025-11-24 13:00:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 13:00:39] ANSI_COLOR="0;31"
[2025-11-24 13:00:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 13:00:39] HOME_URL="https://www.centos.org/"
[2025-11-24 13:00:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 13:00:39] 
[2025-11-24 13:00:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 13:00:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 13:00:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 13:00:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 13:00:39] 
[2025-11-24 13:00:39] 2025-11-24 11:57:57,221 | INFO     | ***************************************
[2025-11-24 13:00:39] 2025-11-24 11:57:57,724 | INFO     | executing command: df -mP /scratch/boinc/var/slot104/slots/0
[2025-11-24 13:00:39] 2025-11-24 11:57:57,753 | INFO     | sufficient remaining disk space (3297125597184 B)
[2025-11-24 13:00:39] 2025-11-24 11:57:57,754 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 13:00:39] 2025-11-24 11:57:57,754 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 13:00:39] 2025-11-24 11:57:57,754 | INFO     | update_server=False
[2025-11-24 13:00:39] 2025-11-24 11:57:57,754 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 13:00:39] 2025-11-24 11:57:57,839 [wrapper] supervise_pilot (15 min periods counter: 69)
[2025-11-24 13:00:39] 2025-11-24 11:57:57,909 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 13:00:39] 2025-11-24 11:57:57,910 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 13:00:39] 2025-11-24 11:57:57,910 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 13:00:39] 2025-11-24 11:57:57,910 | INFO     | will abort loop
[2025-11-24 13:00:39] 2025-11-24 11:57:58,294 | INFO     | all data control threads have been joined
[2025-11-24 13:00:39] 2025-11-24 11:57:58,313 | INFO     | all payload control threads have been joined
[2025-11-24 13:00:39] 2025-11-24 11:57:58,760 | INFO     | [job] retrieve thread has finished
[2025-11-24 13:00:39] 2025-11-24 11:57:58,815 | INFO     | all job control threads have been joined
[2025-11-24 13:00:39] 2025-11-24 11:57:58,915 | INFO     | [job] job monitor thread has finished
[2025-11-24 13:00:39] 2025-11-24 11:57:59,070 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 13:00:39] 2025-11-24 11:57:59,300 | INFO     | [data] control thread has finished
[2025-11-24 13:00:39] 2025-11-24 11:57:59,319 | INFO     | [payload] control thread has finished
[2025-11-24 13:00:39] 2025-11-24 11:57:59,580 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 13:00:39] 2025-11-24 11:57:59,641 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 13:00:39] 2025-11-24 11:57:59,692 | INFO     | [payload] failed_post thread has finished
[2025-11-24 13:00:39] 2025-11-24 11:57:59,713 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 13:00:39] 2025-11-24 11:57:59,822 | INFO     | [job] control thread has finished
[2025-11-24 13:00:39] 2025-11-24 11:57:59,857 | INFO     | [data] copytool_in thread has finished
[2025-11-24 13:00:39] 2025-11-24 11:57:59,889 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 13:00:39] 2025-11-24 11:58:00,102 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 13:00:39] 2025-11-24 11:58:00,161 | INFO     | [payload] validate_post thread has finished
[2025-11-24 13:00:39] 2025-11-24 11:58:00,240 | INFO     | [job] validate thread has finished
[2025-11-24 13:00:39] 2025-11-24 11:58:00,241 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 13:00:39] 2025-11-24 11:58:00,895 | INFO     | [job] queue monitor thread has finished
[2025-11-24 13:00:39] 2025-11-24 11:58:01,076 | INFO     | [data] copytool_out thread has finished
[2025-11-24 13:00:39] 2025-11-24 11:58:03,648 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 13:00:39] 2025-11-24 11:58:26,926 | INFO     | PID=2733276 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 13:00:39] 2025-11-24 11:58:26,926 | INFO     | .. there are 9 such processes running
[2025-11-24 13:00:39] 2025-11-24 11:58:26,926 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 13:00:39] 2025-11-24 11:58:26,927 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 13:00:39] 2025-11-24 11:58:26,927 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 13:00:39] 2025-11-24 11:58:38,994 | INFO     | [monitor] cgroup control has ended
[2025-11-24 13:00:39] 2025-11-24 11:58:40,204 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22837415085888)>', '<ExcThread(monitor, started 22837173643008)>']
[2025-11-24 13:00:39] 2025-11-24 11:58:40,996 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 13:00:39] 2025-11-24 11:58:40,997 | INFO     | [monitor] control thread has ended
[2025-11-24 13:00:39] 2025-11-24 11:58:45,229 | INFO     | all workflow threads have been joined
[2025-11-24 13:00:39] 2025-11-24 11:58:45,230 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 13:00:39] 2025-11-24 11:58:45,230 | INFO     | traces error code: 0
[2025-11-24 13:00:39] 2025-11-24 11:58:45,230 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 13:00:39] 2025-11-24 11:58:45,372 [wrapper] ==== pilot stdout END ====
[2025-11-24 13:00:39] 2025-11-24 11:58:45,376 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 13:00:39] 2025-11-24 11:58:45,380 [wrapper] pilotpid: 2733276
[2025-11-24 13:00:39] 2025-11-24 11:58:45,383 [wrapper] Pilot exit status: 0
[2025-11-24 13:00:39] 2025-11-24 11:58:45,401 [wrapper] pandaids: 6892547031
[2025-11-24 13:00:39] 2025-11-24 11:58:45,585 [wrapper] cleanup supervisor_pilot  275587 2733277
[2025-11-24 13:00:39] 2025-11-24 11:58:45,589 [wrapper] Test setup, not cleaning
[2025-11-24 13:00:39] 2025-11-24 11:58:45,593 [wrapper] apfmon messages muted
[2025-11-24 13:00:39] 2025-11-24 11:58:45,597 [wrapper] ==== wrapper stdout END ====
[2025-11-24 13:00:39] 2025-11-24 11:58:45,601 [wrapper] ==== wrapper stderr END ====
[2025-11-24 13:00:39]  *** Error codes and diagnostics ***
[2025-11-24 13:00:39]     "exeErrorCode": 0,
[2025-11-24 13:00:39]     "exeErrorDiag": "",
[2025-11-24 13:00:39]     "pilotErrorCode": 0,
[2025-11-24 13:00:39]     "pilotErrorDiag": "",
[2025-11-24 13:00:39]  *** Listing of results directory ***
[2025-11-24 13:00:39] total 1326804
[2025-11-24 13:00:39] -rw-r--r-- 1 boinc boinc    576529 Nov 19 09:16 pilot3.tar.gz
[2025-11-24 13:00:39] -rw-r--r-- 1 boinc boinc      5112 Nov 19 09:29 queuedata.json
[2025-11-24 13:00:39] -rwx------ 1 boinc boinc     36292 Nov 19 09:30 runpilot2-wrapper.sh
[2025-11-24 13:00:39] -rw-r--r-- 1 boinc boinc       100 Nov 23 19:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 13:00:39] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 19:57 run_atlas
[2025-11-24 13:00:39] -rw-r--r-- 1 boinc boinc       105 Nov 23 19:57 job.xml
[2025-11-24 13:00:39] -rw-r--r-- 2 boinc boinc 409939469 Nov 23 19:57 EVNT.47493027._000313.pool.root.1
[2025-11-24 13:00:39] -rw-r--r-- 1 boinc boinc      6688 Nov 23 19:57 init_data.xml
[2025-11-24 13:00:39] -rw-r--r-- 2 boinc boinc     15120 Nov 23 19:57 start_atlas.sh
[2025-11-24 13:00:39] drwxrwx--x 2 boinc boinc      4096 Nov 23 19:57 shared
[2025-11-24 13:00:39] -rw-r--r-- 2 boinc boinc    590098 Nov 23 19:57 input.tar.gz
[2025-11-24 13:00:39] -rw-r--r-- 1 boinc boinc         0 Nov 23 19:57 boinc_lockfile
[2025-11-24 13:00:39] -rw-r--r-- 1 boinc boinc      2770 Nov 23 19:57 pandaJob.out
[2025-11-24 13:00:39] -rw------- 1 boinc boinc    989786 Nov 23 19:57 agis_schedconf.cvmfs.json
[2025-11-24 13:00:39] drwx------ 5 boinc boinc      4096 Nov 23 19:57 pilot3
[2025-11-24 13:00:39] -rw-r--r-- 1 boinc boinc       532 Nov 24 12:49 boinc_task_state.xml
[2025-11-24 13:00:39] -rw------- 1 boinc boinc 924679442 Nov 24 12:57 HITS.47493029._003081.pool.root.1
[2025-11-24 13:00:39] -rw------- 1 boinc boinc      1038 Nov 24 12:57 memory_monitor_summary.json
[2025-11-24 13:00:39] -rw------- 1 boinc boinc   1516227 Nov 24 12:57 agis_ddmendpoints.agis.ALL.json
[2025-11-24 13:00:39] -rw------- 1 boinc boinc   1726293 Nov 24 12:57 log.47493029._003081.job.log.tgz.1
[2025-11-24 13:00:39] -rw------- 1 boinc boinc      8588 Nov 24 12:57 heartbeat.json
[2025-11-24 13:00:39] -rw------- 1 boinc boinc        95 Nov 24 12:58 pilot_heartbeat.json
[2025-11-24 13:00:39] -rw------- 1 boinc boinc      5021 Nov 24 12:58 pilotlog.txt
[2025-11-24 13:00:39] -rw------- 1 boinc boinc   8332706 Nov 24 12:58 log.47493029._003081.job.log.1
[2025-11-24 13:00:39] -rw------- 1 boinc boinc       353 Nov 24 12:58 output.list
[2025-11-24 13:00:39] -rw-r--r-- 1 boinc boinc       620 Nov 24 12:58 runtime_log
[2025-11-24 13:00:39] -rw------- 1 boinc boinc  10076160 Nov 24 12:58 result.tar.gz
[2025-11-24 13:00:39] -rw-r--r-- 1 boinc boinc      9085 Nov 24 12:58 runtime_log.err
[2025-11-24 13:00:39] -rw------- 1 boinc boinc       671 Nov 24 12:58 VMEODmOlsf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm41GKDmjWTKOn.diag
[2025-11-24 13:00:39] -rw-r--r-- 1 boinc boinc        28 Nov 24 13:00 wrapper_checkpoint.txt
[2025-11-24 13:00:39] -rw-r--r-- 1 boinc boinc     21087 Nov 24 13:00 stderr.txt
[2025-11-24 13:00:39] -rw-r--r-- 1 boinc boinc      8192 Nov 24 13:00 boinc_mmap_file
[2025-11-24 13:00:39] HITS file was successfully produced:
[2025-11-24 13:00:39] -rw------- 1 boinc boinc 924679442 Nov 24 12:57 shared/HITS.pool.root.1
[2025-11-24 13:00:39]  *** Contents of shared directory: ***
[2025-11-24 13:00:39] total 1313784
[2025-11-24 13:00:39] -rw-r--r-- 2 boinc boinc 409939469 Nov 23 19:57 ATLAS.root_0
[2025-11-24 13:00:39] -rw-r--r-- 2 boinc boinc     15120 Nov 23 19:57 start_atlas.sh
[2025-11-24 13:00:39] -rw-r--r-- 2 boinc boinc    590098 Nov 23 19:57 input.tar.gz
[2025-11-24 13:00:39] -rw------- 1 boinc boinc 924679442 Nov 24 12:57 HITS.pool.root.1
[2025-11-24 13:00:39] -rw------- 1 boinc boinc  10076160 Nov 24 12:58 result.tar.gz
13:00:40 (2725747): run_atlas exited; CPU time 240391.311980
13:00:40 (2725747): called boinc_finish(0)

</stderr_txt>
]]>

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