Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:12:26 (610606): wrapper (7.7.26015): starting
03:12:26 (610606): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 03:12:26] Arguments: --nthreads 4
[2025-11-21 03:12:26] Threads: 4
[2025-11-21 03:12:26] Checking for CVMFS
[2025-11-21 03:12:26] No cvmfs_config command found, will try listing directly
[2025-11-21 03:12:26] CVMFS is ok
[2025-11-21 03:12:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 03:12:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 03:12:26] Further information can be found at the LHC@home message board.
[2025-11-21 03:12:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 03:12:26] Checking for apptainer binary...
[2025-11-21 03:12:26] which: no apptainer in ((null))
[2025-11-21 03:12:26] apptainer is not installed, using version from CVMFS
[2025-11-21 03:12:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 03:12:27] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot104/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2025-11-21 03:12:27] apptainer works
[2025-11-21 03:12:27] Set ATHENA_PROC_NUMBER=4
[2025-11-21 03:12:27] Set ATHENA_CORE_NUMBER=4
[2025-11-21 03:12:27] Starting ATLAS job with PandaID=6892544863
[2025-11-21 03:12:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot104/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 19:58:16]  *** The last 200 lines of the pilot log: ***
[2025-11-21 19:58:16] 2025-11-21 18:44:27,948 | INFO     | time since job start (59506s) is within the limit (172800.0s)
[2025-11-21 19:58:16] 2025-11-21 18:44:29,039 | INFO     | monitor loop #3933: job 0:6892544863 is in state 'finished'
[2025-11-21 19:58:16] 2025-11-21 18:44:29,039 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 19:58:16] 2025-11-21 18:44:29,576 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 19:58:16] 2025-11-21 18:44:29,597 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2679.6062031250003
[2025-11-21 19:58:16] 2025-11-21 18:44:29,622 | INFO     | using path: /scratch/boinc/var/slot104/slots/0/PanDA_Pilot-6892544863/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 19:58:16] 2025-11-21 18:44:29,623 | INFO     | extracted standard info from prmon json
[2025-11-21 19:58:16] 2025-11-21 18:44:29,623 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 19:58:16] 2025-11-21 18:44:29,623 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 19:58:16] 2025-11-21 18:44:29,639 | INFO     | fitting pss+swap vs Time
[2025-11-21 19:58:16] 2025-11-21 18:44:29,641 | INFO     | sum of square deviations: 287405426736.923
[2025-11-21 19:58:16] 2025-11-21 18:44:29,666 | INFO     | sum of deviations: 795330930941.2312
[2025-11-21 19:58:16] 2025-11-21 18:44:29,666 | INFO     | mean x: 1763720904.0461538
[2025-11-21 19:58:16] 2025-11-21 18:44:29,666 | INFO     | mean y: 2273130.794871795
[2025-11-21 19:58:16] 2025-11-21 18:44:29,666 | INFO     | intersect: -4878434253.410296
[2025-11-21 19:58:16] 2025-11-21 18:44:29,667 | INFO     | chi2: 4.332674584311479
[2025-11-21 19:58:16] 2025-11-21 18:44:29,668 | INFO     | sum of square deviations: 283006483564.4123
[2025-11-21 19:58:16] 2025-11-21 18:44:29,692 | INFO     | sum of deviations: 1001229359057.9795
[2025-11-21 19:58:16] 2025-11-21 18:44:29,692 | INFO     | mean x: 1763720751.5463917
[2025-11-21 19:58:16] 2025-11-21 18:44:29,692 | INFO     | mean y: 2280264.4226804124
[2025-11-21 19:58:16] 2025-11-21 18:44:29,693 | INFO     | intersect: -6237467233.185922
[2025-11-21 19:58:16] 2025-11-21 18:44:29,694 | INFO     | chi2: 2.105025920601663
[2025-11-21 19:58:16] 2025-11-21 18:44:29,694 | INFO     | current chi2=2.105025920601663 (change=51.41509292611275 %)
[2025-11-21 19:58:16] 2025-11-21 18:44:29,695 | INFO     | sum of square deviations: 278652479760.17255
[2025-11-21 19:58:16] 2025-11-21 18:44:29,719 | INFO     | sum of deviations: 997539482238.6791
[2025-11-21 19:58:16] 2025-11-21 18:44:29,719 | INFO     | mean x: 1763720599.0435233
[2025-11-21 19:58:16] 2025-11-21 18:44:29,719 | INFO     | mean y: 2280134.3647668394
[2025-11-21 19:58:16] 2025-11-21 18:44:29,719 | INFO     | intersect: -6311609247.483954
[2025-11-21 19:58:16] 2025-11-21 18:44:29,720 | INFO     | chi2: 2.095286309845557
[2025-11-21 19:58:16] 2025-11-21 18:44:29,721 | INFO     | current chi2=2.095286309845557 (change=0.4626836496779127 %)
[2025-11-21 19:58:16] 2025-11-21 18:44:29,721 | INFO     | right removable region: 964
[2025-11-21 19:58:16] 2025-11-21 18:44:29,722 | INFO     | sum of square deviations: 283006456114.4121
[2025-11-21 19:58:16] 2025-11-21 18:44:29,746 | INFO     | sum of deviations: 609546767908.4735
[2025-11-21 19:58:16] 2025-11-21 18:44:29,746 | INFO     | mean x: 1763721056.5463917
[2025-11-21 19:58:16] 2025-11-21 18:44:29,746 | INFO     | mean y: 2279560.7783505153
[2025-11-21 19:58:16] 2025-11-21 18:44:29,746 | INFO     | intersect: -3796469359.194515
[2025-11-21 19:58:16] 2025-11-21 18:44:29,747 | INFO     | chi2: 2.3716888671259024
[2025-11-21 19:58:16] 2025-11-21 18:44:29,748 | INFO     | current chi2=2.3716888671259024 (change=45.26039699095482 %)
[2025-11-21 19:58:16] 2025-11-21 18:44:29,749 | INFO     | sum of square deviations: 278652602616.9016
[2025-11-21 19:58:16] 2025-11-21 18:44:29,772 | INFO     | sum of deviations: 581555870757.543
[2025-11-21 19:58:16] 2025-11-21 18:44:29,772 | INFO     | mean x: 1763721209.046632
[2025-11-21 19:58:16] 2025-11-21 18:44:29,772 | INFO     | mean y: 2280540.7212435235
[2025-11-21 19:58:16] 2025-11-21 18:44:29,772 | INFO     | intersect: -3678655556.2970977
[2025-11-21 19:58:16] 2025-11-21 18:44:29,773 | INFO     | chi2: 2.356830169731972
[2025-11-21 19:58:16] 2025-11-21 18:44:29,774 | INFO     | current chi2=2.356830169731972 (change=0.6265028098705342 %)
[2025-11-21 19:58:16] 2025-11-21 18:44:29,774 | INFO     | left removable region: 20
[2025-11-21 19:58:16] 2025-11-21 18:44:29,775 | INFO     | sum of square deviations: 260853676926.218
[2025-11-21 19:58:16] 2025-11-21 18:44:29,798 | INFO     | sum of deviations: 735232651550.1158
[2025-11-21 19:58:16] 2025-11-21 18:44:29,798 | INFO     | mean x: 1763721178.5434322
[2025-11-21 19:58:16] 2025-11-21 18:44:29,798 | INFO     | mean y: 2289352.680084746
[2025-11-21 19:58:16] 2025-11-21 18:44:29,798 | INFO     | intersect: -4968870778.071551
[2025-11-21 19:58:16] 2025-11-21 18:44:29,799 | INFO     | chi2: 0.09200505148693457
[2025-11-21 19:58:16] 2025-11-21 18:44:29,799 | INFO     | current memory leak: 2.82 B/s (using 944 data points, chi2=0.09)
[2025-11-21 19:58:16] 2025-11-21 18:44:29,800 | INFO     | could have reported an average CPU frequency of 2681 MHz (36 samples)
[2025-11-21 19:58:16] 2025-11-21 18:44:29,800 | INFO     | ..............................
[2025-11-21 19:58:16] 2025-11-21 18:44:29,801 | INFO     | . Timing measurements:
[2025-11-21 19:58:16] 2025-11-21 18:44:29,801 | INFO     | . get job = 0 s
[2025-11-21 19:58:16] 2025-11-21 18:44:29,801 | INFO     | . initial setup = 1 s
[2025-11-21 19:58:16] 2025-11-21 18:44:29,801 | INFO     | . payload setup = 9 s
[2025-11-21 19:58:16] 2025-11-21 18:44:29,801 | INFO     | . stage-in = 0 s
[2025-11-21 19:58:16] 2025-11-21 18:44:29,801 | INFO     | . payload execution = 59464 s
[2025-11-21 19:58:16] 2025-11-21 18:44:29,801 | INFO     | . stage-out = 3 s
[2025-11-21 19:58:16] 2025-11-21 18:44:29,801 | INFO     | . log creation = 0 s
[2025-11-21 19:58:16] 2025-11-21 18:44:29,801 | INFO     | ..............................
[2025-11-21 19:58:16] 2025-11-21 18:44:29,905 | INFO     | 
[2025-11-21 19:58:16] 2025-11-21 18:44:29,905 | INFO     | job summary report
[2025-11-21 19:58:16] 2025-11-21 18:44:29,905 | INFO     | --------------------------------------------------
[2025-11-21 19:58:16] 2025-11-21 18:44:29,906 | INFO     | PanDA job id: 6892544863
[2025-11-21 19:58:16] 2025-11-21 18:44:29,906 | INFO     | task id: 47493029
[2025-11-21 19:58:16] 2025-11-21 18:44:29,906 | INFO     | errors: (none)
[2025-11-21 19:58:16] 2025-11-21 18:44:29,906 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 19:58:16] 2025-11-21 18:44:29,906 | INFO     | pilot state: finished 
[2025-11-21 19:58:16] 2025-11-21 18:44:29,906 | INFO     | transexitcode: 0
[2025-11-21 19:58:16] 2025-11-21 18:44:29,906 | INFO     | exeerrorcode: 0
[2025-11-21 19:58:16] 2025-11-21 18:44:29,906 | INFO     | exeerrordiag: 
[2025-11-21 19:58:16] 2025-11-21 18:44:29,906 | INFO     | exitcode: 0
[2025-11-21 19:58:16] 2025-11-21 18:44:29,906 | INFO     | exitmsg: OK
[2025-11-21 19:58:16] 2025-11-21 18:44:29,906 | INFO     | cpuconsumptiontime: 231341 s
[2025-11-21 19:58:16] 2025-11-21 18:44:29,907 | INFO     | nevents: 1000
[2025-11-21 19:58:16] 2025-11-21 18:44:29,907 | INFO     | neventsw: 0
[2025-11-21 19:58:16] 2025-11-21 18:44:29,907 | INFO     | pid: 630508
[2025-11-21 19:58:16] 2025-11-21 18:44:29,907 | INFO     | pgrp: 630508
[2025-11-21 19:58:16] 2025-11-21 18:44:29,907 | INFO     | corecount: 4
[2025-11-21 19:58:16] 2025-11-21 18:44:29,907 | INFO     | event service: False
[2025-11-21 19:58:16] 2025-11-21 18:44:29,907 | INFO     | sizes: {0: 2298637, 1: 2298836, 8: 2299098, 11: 2299126, 59478: 2353874, 59482: 2363076, 59490: 2363266}
[2025-11-21 19:58:16] 2025-11-21 18:44:29,907 | INFO     | --------------------------------------------------
[2025-11-21 19:58:16] 2025-11-21 18:44:29,907 | INFO     | 
[2025-11-21 19:58:16] 2025-11-21 18:44:29,907 | INFO     | executing command: ls -lF /scratch/boinc/var/slot104/slots/0
[2025-11-21 19:58:16] 2025-11-21 18:44:29,938 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 19:58:16] 2025-11-21 18:44:29,939 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 19:58:16] 2025-11-21 18:44:29,939 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 19:58:16] 2025-11-21 18:44:29,939 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 19:58:16] 2025-11-21 18:44:29,939 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 19:58:16] 2025-11-21 18:44:29,939 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 19:58:16] 2025-11-21 18:44:29,939 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 19:58:16] 2025-11-21 18:44:29,939 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 19:58:16] 2025-11-21 18:44:29,939 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 19:58:16] 2025-11-21 18:44:29,940 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 19:58:16] 2025-11-21 18:44:29,940 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 19:58:16] 2025-11-21 18:44:29,940 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 19:58:16] 2025-11-21 18:44:29,940 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 19:58:16] 2025-11-21 18:44:29,940 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 19:58:16] 2025-11-21 18:44:29,940 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 19:58:16] 2025-11-21 18:44:29,940 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 19:58:16] 2025-11-21 18:44:29,940 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 19:58:16] 2025-11-21 18:44:29,940 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 19:58:16] 2025-11-21 18:44:29,940 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 19:58:16] 2025-11-21 18:44:29,940 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 19:58:16] 2025-11-21 18:44:29,941 | INFO     | job 6892544863 has completed (purged errors)
[2025-11-21 19:58:16] 2025-11-21 18:44:29,941 | INFO     | overall cleanup function is called
[2025-11-21 19:58:16] 2025-11-21 18:44:30,957 | INFO     | --- collectZombieJob: --- 10, [630508]
[2025-11-21 19:58:16] 2025-11-21 18:44:30,958 | INFO     | zombie collector waiting for pid 630508
[2025-11-21 19:58:16] 2025-11-21 18:44:30,958 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 19:58:16] 2025-11-21 18:44:30,958 | INFO     | collected zombie processes
[2025-11-21 19:58:16] 2025-11-21 18:44:30,958 | INFO     | will attempt to kill all subprocesses of pid=630508
[2025-11-21 19:58:16] 2025-11-21 18:44:31,735 | INFO     | process IDs to be killed: [630508] (in reverse order)
[2025-11-21 19:58:16] 2025-11-21 18:44:32,018 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 19:58:16] 2025-11-21 18:44:32,018 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 19:58:16] 2025-11-21 18:44:32,050 | INFO     | did not find any defunct processes belonging to 630508
[2025-11-21 19:58:16] 2025-11-21 18:44:32,080 | INFO     | did not find any defunct processes belonging to 630508
[2025-11-21 19:58:16] 2025-11-21 18:44:32,082 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 19:58:16] 2025-11-21 18:44:32,082 | INFO     | ready for new job
[2025-11-21 19:58:16] 2025-11-21 18:44:32,082 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 19:58:16] 2025-11-21 18:44:32,088 | INFO     | ***************************************
[2025-11-21 19:58:16] 2025-11-21 18:44:32,090 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 19:58:16] 2025-11-21 18:44:32,090 | INFO     | ***************************************
[2025-11-21 19:58:16] 2025-11-21 18:44:32,091 | INFO     | 
[2025-11-21 19:58:16] 2025-11-21 18:44:32,099 | INFO     | architecture information:
[2025-11-21 19:58:16] 2025-11-21 18:44:32,100 | INFO     | executing command: cat /etc/os-release
[2025-11-21 19:58:16] 2025-11-21 18:44:32,121 | INFO     | cat /etc/os-release:
[2025-11-21 19:58:16] NAME="CentOS Linux"
[2025-11-21 19:58:16] VERSION="7 (Core)"
[2025-11-21 19:58:16] ID="centos"
[2025-11-21 19:58:16] ID_LIKE="rhel fedora"
[2025-11-21 19:58:16] VERSION_ID="7"
[2025-11-21 19:58:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 19:58:16] ANSI_COLOR="0;31"
[2025-11-21 19:58:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 19:58:16] HOME_URL="https://www.centos.org/"
[2025-11-21 19:58:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 19:58:16] 
[2025-11-21 19:58:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 19:58:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 19:58:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 19:58:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 19:58:16] 
[2025-11-21 19:58:16] 2025-11-21 18:44:32,122 | INFO     | ***************************************
[2025-11-21 19:58:16] 2025-11-21 18:44:32,625 | INFO     | executing command: df -mP /scratch/boinc/var/slot104/slots/0
[2025-11-21 19:58:16] 2025-11-21 18:44:32,648 | INFO     | sufficient remaining disk space (3301567365120 B)
[2025-11-21 19:58:16] 2025-11-21 18:44:32,649 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 19:58:16] 2025-11-21 18:44:32,649 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 19:58:16] 2025-11-21 18:44:32,649 | INFO     | update_server=False
[2025-11-21 19:58:16] 2025-11-21 18:44:32,649 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 19:58:16] 2025-11-21 18:44:32,649 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 19:58:16] 2025-11-21 18:44:32,650 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 19:58:16] 2025-11-21 18:44:32,650 | INFO     | aborting loop
[2025-11-21 19:58:16] 2025-11-21 18:44:32,650 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 19:58:16] 2025-11-21 18:44:33,137 | INFO     | all data control threads have been joined
[2025-11-21 19:58:16] 2025-11-21 18:44:33,448 | INFO     | all job control threads have been joined
[2025-11-21 19:58:16] 2025-11-21 18:44:33,653 | INFO     | [job] job monitor thread has finished
[2025-11-21 19:58:16] 2025-11-21 18:44:33,654 | INFO     | [job] retrieve thread has finished
[2025-11-21 19:58:16] 2025-11-21 18:44:33,671 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 19:58:16] 2025-11-21 18:44:33,710 | INFO     | [data] copytool_in thread has finished
[2025-11-21 19:58:16] 2025-11-21 18:44:33,721 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 19:58:16] 2025-11-21 18:44:33,870 | INFO     | all payload control threads have been joined
[2025-11-21 19:58:16] 2025-11-21 18:44:34,135 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 19:58:16] 2025-11-21 18:44:34,143 | INFO     | [data] control thread has finished
[2025-11-21 19:58:16] 2025-11-21 18:44:34,200 | INFO     | [job] validate thread has finished
[2025-11-21 19:58:16] 2025-11-21 18:44:34,454 | INFO     | [job] control thread has finished
[2025-11-21 19:58:16] 2025-11-21 18:44:34,655 | INFO     | [data] copytool_out thread has finished
[2025-11-21 19:58:16] 2025-11-21 18:44:34,839 | INFO     | [payload] validate_post thread has finished
[2025-11-21 19:58:16] 2025-11-21 18:44:34,875 | INFO     | [payload] control thread has finished
[2025-11-21 19:58:16] 2025-11-21 18:44:34,911 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 19:58:16] 2025-11-21 18:44:34,917 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 19:58:16] 2025-11-21 18:44:35,085 | INFO     | [payload] failed_post thread has finished
[2025-11-21 19:58:16] 2025-11-21 18:44:35,916 | INFO     | [job] queue monitor thread has finished
[2025-11-21 19:58:16] 2025-11-21 18:44:36,655 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 19:58:16] 2025-11-21 18:45:01,966 | INFO     | PID=615120 has CPU usage=14.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 19:58:16] 2025-11-21 18:45:01,966 | INFO     | .. there are 10 such processes running
[2025-11-21 19:58:16] 2025-11-21 18:45:01,967 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 19:58:16] 2025-11-21 18:45:01,967 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 19:58:16] 2025-11-21 18:45:01,967 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 19:58:16] 2025-11-21 18:45:21,082 | INFO     | [monitor] cgroup control has ended
[2025-11-21 19:58:16] 2025-11-21 18:45:21,770 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23444377089856)>', '<ExcThread(monitor, started 23443930056448)>']
[2025-11-21 19:58:16] 2025-11-21 18:45:22,059 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 19:58:16] 2025-11-21 18:45:22,060 | INFO     | [monitor] control thread has ended
[2025-11-21 19:58:16] 2025-11-21 18:45:26,795 | INFO     | all workflow threads have been joined
[2025-11-21 19:58:16] 2025-11-21 18:45:26,796 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 19:58:16] 2025-11-21 18:45:26,796 | INFO     | traces error code: 0
[2025-11-21 19:58:16] 2025-11-21 18:45:26,796 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 19:58:16] 2025-11-21 18:45:26,938 [wrapper] ==== pilot stdout END ====
[2025-11-21 19:58:16] 2025-11-21 18:45:26,942 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 19:58:16] 2025-11-21 18:45:26,945 [wrapper] pilotpid: 615120
[2025-11-21 19:58:16] 2025-11-21 18:45:26,949 [wrapper] Pilot exit status: 0
[2025-11-21 19:58:16] 2025-11-21 18:45:26,963 [wrapper] pandaids: 6892544863
[2025-11-21 19:58:16] 2025-11-21 18:45:27,148 [wrapper] cleanup supervisor_pilot 2159409 615121
[2025-11-21 19:58:16] 2025-11-21 18:45:27,152 [wrapper] Test setup, not cleaning
[2025-11-21 19:58:16] 2025-11-21 18:45:27,156 [wrapper] apfmon messages muted
[2025-11-21 19:58:16] 2025-11-21 18:45:27,159 [wrapper] ==== wrapper stdout END ====
[2025-11-21 19:58:16] 2025-11-21 18:45:27,162 [wrapper] ==== wrapper stderr END ====
[2025-11-21 19:58:16]  *** Error codes and diagnostics ***
[2025-11-21 19:58:16]     "exeErrorCode": 0,
[2025-11-21 19:58:16]     "exeErrorDiag": "",
[2025-11-21 19:58:16]     "pilotErrorCode": 0,
[2025-11-21 19:58:16]     "pilotErrorDiag": "",
[2025-11-21 19:58:16]  *** Listing of results directory ***
[2025-11-21 19:58:16] total 1324824
[2025-11-21 19:58:16] -rw-r--r-- 1 boinc boinc    576529 Nov 19 09:11 pilot3.tar.gz
[2025-11-21 19:58:16] -rw-r--r-- 1 boinc boinc      5112 Nov 19 09:13 queuedata.json
[2025-11-21 19:58:16] -rwx------ 1 boinc boinc     36292 Nov 19 09:14 runpilot2-wrapper.sh
[2025-11-21 19:58:16] -rw-r--r-- 1 boinc boinc       100 Nov 21 01:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 19:58:16] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 01:32 run_atlas
[2025-11-21 19:58:16] -rw-r--r-- 1 boinc boinc       105 Nov 21 01:32 job.xml
[2025-11-21 19:58:16] -rw-r--r-- 2 boinc boinc 409984932 Nov 21 03:12 EVNT.47493027._000287.pool.root.1
[2025-11-21 19:58:16] -rw-r--r-- 1 boinc boinc      6687 Nov 21 03:12 init_data.xml
[2025-11-21 19:58:16] -rw-r--r-- 2 boinc boinc     15120 Nov 21 03:12 start_atlas.sh
[2025-11-21 19:58:16] drwxrwx--x 2 boinc boinc      4096 Nov 21 03:12 shared
[2025-11-21 19:58:16] -rw-r--r-- 2 boinc boinc    590100 Nov 21 03:12 input.tar.gz
[2025-11-21 19:58:16] -rw-r--r-- 1 boinc boinc         0 Nov 21 03:12 boinc_lockfile
[2025-11-21 19:58:16] -rw-r--r-- 1 boinc boinc      2773 Nov 21 03:12 pandaJob.out
[2025-11-21 19:58:16] -rw------- 1 boinc boinc    989817 Nov 21 03:12 agis_schedconf.cvmfs.json
[2025-11-21 19:58:16] drwx------ 5 boinc boinc      4096 Nov 21 03:12 pilot3
[2025-11-21 19:58:16] -rw-r--r-- 1 boinc boinc       532 Nov 21 19:38 boinc_task_state.xml
[2025-11-21 19:58:16] -rw------- 1 boinc boinc 923137329 Nov 21 19:43 HITS.47493029._002825.pool.root.1
[2025-11-21 19:58:16] -rw------- 1 boinc boinc      1039 Nov 21 19:44 memory_monitor_summary.json
[2025-11-21 19:58:16] -rw------- 1 boinc boinc   1526164 Nov 21 19:44 agis_ddmendpoints.agis.ALL.json
[2025-11-21 19:58:16] -rw------- 1 boinc boinc   1695759 Nov 21 19:44 log.47493029._002825.job.log.tgz.1
[2025-11-21 19:58:16] -rw------- 1 boinc boinc      8593 Nov 21 19:44 heartbeat.json
[2025-11-21 19:58:16] -rw------- 1 boinc boinc        95 Nov 21 19:45 pilot_heartbeat.json
[2025-11-21 19:58:16] -rw------- 1 boinc boinc      4836 Nov 21 19:45 pilotlog.txt
[2025-11-21 19:58:16] -rw------- 1 boinc boinc   8089424 Nov 21 19:45 log.47493029._002825.job.log.1
[2025-11-21 19:58:16] -rw------- 1 boinc boinc       353 Nov 21 19:45 output.list
[2025-11-21 19:58:16] -rw-r--r-- 1 boinc boinc       620 Nov 21 19:45 runtime_log
[2025-11-21 19:58:16] -rw------- 1 boinc boinc   9809920 Nov 21 19:45 result.tar.gz
[2025-11-21 19:58:16] -rw-r--r-- 1 boinc boinc      9085 Nov 21 19:45 runtime_log.err
[2025-11-21 19:58:16] -rw------- 1 boinc boinc       671 Nov 21 19:45 FJfNDmPVsf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmr4FKDm0hyl3m.diag
[2025-11-21 19:58:16] -rw-r--r-- 1 boinc boinc        28 Nov 21 19:58 wrapper_checkpoint.txt
[2025-11-21 19:58:16] -rw-r--r-- 1 boinc boinc      8192 Nov 21 19:58 boinc_mmap_file
[2025-11-21 19:58:16] -rw-r--r-- 1 boinc boinc     21095 Nov 21 19:58 stderr.txt
[2025-11-21 19:58:16] HITS file was successfully produced:
[2025-11-21 19:58:16] -rw------- 1 boinc boinc 923137329 Nov 21 19:43 shared/HITS.pool.root.1
[2025-11-21 19:58:16]  *** Contents of shared directory: ***
[2025-11-21 19:58:16] total 1312064
[2025-11-21 19:58:16] -rw-r--r-- 2 boinc boinc 409984932 Nov 21 03:12 ATLAS.root_0
[2025-11-21 19:58:16] -rw-r--r-- 2 boinc boinc     15120 Nov 21 03:12 start_atlas.sh
[2025-11-21 19:58:16] -rw-r--r-- 2 boinc boinc    590100 Nov 21 03:12 input.tar.gz
[2025-11-21 19:58:16] -rw------- 1 boinc boinc 923137329 Nov 21 19:43 HITS.pool.root.1
[2025-11-21 19:58:16] -rw------- 1 boinc boinc   9809920 Nov 21 19:45 result.tar.gz
19:58:17 (610606): run_atlas exited; CPU time 234339.209424
19:58:17 (610606): called boinc_finish(0)

</stderr_txt>
]]>

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