Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:06:16 (1477644): wrapper (7.7.26015): starting
07:06:16 (1477644): wrapper: running run_atlas (--nthreads 4)
[2025-11-27 07:06:16] Arguments: --nthreads 4
[2025-11-27 07:06:16] Threads: 4
[2025-11-27 07:06:16] Checking for CVMFS
[2025-11-27 07:06:16] No cvmfs_config command found, will try listing directly
[2025-11-27 07:06:16] CVMFS is ok
[2025-11-27 07:06:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 07:06:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 07:06:16] Further information can be found at the LHC@home message board.
[2025-11-27 07:06:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 07:06:16] Checking for apptainer binary...
[2025-11-27 07:06:16] which: no apptainer in ((null))
[2025-11-27 07:06:16] apptainer is not installed, using version from CVMFS
[2025-11-27 07:06:16] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 07:06:17] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut04.grid.cesnet.cz
[2025-11-27 07:06:17] apptainer works
[2025-11-27 07:06:17] Set ATHENA_PROC_NUMBER=4
[2025-11-27 07:06:17] Set ATHENA_CORE_NUMBER=4
[2025-11-27 07:06:17] Starting ATLAS job with PandaID=6893878715
[2025-11-27 07:06:17] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 00:02:42]  *** The last 200 lines of the pilot log: ***
[2025-11-28 00:02:42] 2025-11-27 22:53:00,405 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2585.593734375001
[2025-11-28 00:02:42] 2025-11-27 22:53:00,418 | INFO     | using path: /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6893878715/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 00:02:42] 2025-11-27 22:53:00,419 | INFO     | extracted standard info from prmon json
[2025-11-28 00:02:42] 2025-11-27 22:53:00,419 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 00:02:42] 2025-11-27 22:53:00,419 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 00:02:42] 2025-11-27 22:53:00,437 | INFO     | fitting pss+swap vs Time
[2025-11-28 00:02:42] 2025-11-27 22:53:00,438 | INFO     | sum of square deviations: 300873241267.5
[2025-11-28 00:02:42] 2025-11-27 22:53:00,459 | INFO     | sum of deviations: 1056661033952.0001
[2025-11-28 00:02:42] 2025-11-27 22:53:00,459 | INFO     | mean x: 1764253781.5
[2025-11-28 00:02:42] 2025-11-27 22:53:00,460 | INFO     | mean y: 2280599.581818182
[2025-11-28 00:02:42] 2025-11-27 22:53:00,460 | INFO     | intersect: -6193744733.412415
[2025-11-28 00:02:42] 2025-11-27 22:53:00,461 | INFO     | chi2: 4.91788466536033
[2025-11-28 00:02:42] 2025-11-27 22:53:00,462 | INFO     | sum of square deviations: 296337537620.0
[2025-11-28 00:02:42] 2025-11-27 22:53:00,483 | INFO     | sum of deviations: 1303956090899.0
[2025-11-28 00:02:42] 2025-11-27 22:53:00,483 | INFO     | mean x: 1764253629.0
[2025-11-28 00:02:42] 2025-11-27 22:53:00,483 | INFO     | mean y: 2288914.099492386
[2025-11-28 00:02:42] 2025-11-27 22:53:00,483 | INFO     | intersect: -7760849309.635117
[2025-11-28 00:02:42] 2025-11-27 22:53:00,484 | INFO     | chi2: 2.138002481636273
[2025-11-28 00:02:42] 2025-11-27 22:53:00,485 | INFO     | current chi2=2.138002481636273 (change=56.52597352077954 %)
[2025-11-28 00:02:42] 2025-11-27 22:53:00,486 | INFO     | sum of square deviations: 291847648785.0
[2025-11-28 00:02:42] 2025-11-27 22:53:00,506 | INFO     | sum of deviations: 1345930457560.4998
[2025-11-28 00:02:42] 2025-11-27 22:53:00,506 | INFO     | mean x: 1764253476.5
[2025-11-28 00:02:42] 2025-11-27 22:53:00,507 | INFO     | mean y: 2290337.1112244898
[2025-11-28 00:02:42] 2025-11-27 22:53:00,507 | INFO     | intersect: -8134018105.886217
[2025-11-28 00:02:42] 2025-11-27 22:53:00,508 | INFO     | chi2: 1.964467465113051
[2025-11-28 00:02:42] 2025-11-27 22:53:00,508 | INFO     | current chi2=1.964467465113051 (change=8.116689200024254 %)
[2025-11-28 00:02:42] 2025-11-27 22:53:00,508 | INFO     | right removable region: 979
[2025-11-28 00:02:42] 2025-11-27 22:53:00,510 | INFO     | sum of square deviations: 296337537620.0
[2025-11-28 00:02:42] 2025-11-27 22:53:00,530 | INFO     | sum of deviations: 868641953585.9999
[2025-11-28 00:02:42] 2025-11-27 22:53:00,530 | INFO     | mean x: 1764253934.0
[2025-11-28 00:02:42] 2025-11-27 22:53:00,530 | INFO     | mean y: 2286911.5411167513
[2025-11-28 00:02:42] 2025-11-27 22:53:00,531 | INFO     | intersect: -5169197592.783508
[2025-11-28 00:02:42] 2025-11-27 22:53:00,532 | INFO     | chi2: 3.0679031946090727
[2025-11-28 00:02:42] 2025-11-27 22:53:00,532 | INFO     | current chi2=3.0679031946090727 (change=37.6174228684501 %)
[2025-11-28 00:02:42] 2025-11-27 22:53:00,533 | INFO     | sum of square deviations: 291847648785.0
[2025-11-28 00:02:42] 2025-11-27 22:53:00,553 | INFO     | sum of deviations: 832389352795.0001
[2025-11-28 00:02:42] 2025-11-27 22:53:00,554 | INFO     | mean x: 1764254086.5
[2025-11-28 00:02:42] 2025-11-27 22:53:00,554 | INFO     | mean y: 2288142.6897959183
[2025-11-28 00:02:42] 2025-11-27 22:53:00,554 | INFO     | intersect: -5029605461.186816
[2025-11-28 00:02:42] 2025-11-27 22:53:00,555 | INFO     | chi2: 3.047048774038821
[2025-11-28 00:02:42] 2025-11-27 22:53:00,555 | INFO     | current chi2=3.047048774038821 (change=0.679761362969253 %)
[2025-11-28 00:02:42] 2025-11-27 22:53:00,555 | INFO     | left removable region: 20
[2025-11-28 00:02:42] 2025-11-27 22:53:00,557 | INFO     | sum of square deviations: 273485164960.0
[2025-11-28 00:02:42] 2025-11-27 22:53:00,576 | INFO     | sum of deviations: 1057851769507.0
[2025-11-28 00:02:42] 2025-11-27 22:53:00,577 | INFO     | mean x: 1764254056.0
[2025-11-28 00:02:42] 2025-11-27 22:53:00,577 | INFO     | mean y: 2300064.1647549532
[2025-11-28 00:02:42] 2025-11-27 22:53:00,577 | INFO     | intersect: -6821906562.445028
[2025-11-28 00:02:42] 2025-11-27 22:53:00,578 | INFO     | chi2: 0.06350297450658744
[2025-11-28 00:02:42] 2025-11-27 22:53:00,578 | INFO     | current memory leak: 3.87 B/s (using 959 data points, chi2=0.06)
[2025-11-28 00:02:42] 2025-11-27 22:53:00,580 | INFO     | could have reported an average CPU frequency of 2611 MHz (37 samples)
[2025-11-28 00:02:42] 2025-11-27 22:53:00,580 | INFO     | ..............................
[2025-11-28 00:02:42] 2025-11-27 22:53:00,580 | INFO     | . Timing measurements:
[2025-11-28 00:02:42] 2025-11-27 22:53:00,580 | INFO     | . get job = 0 s
[2025-11-28 00:02:42] 2025-11-27 22:53:00,580 | INFO     | . initial setup = 1 s
[2025-11-28 00:02:42] 2025-11-27 22:53:00,580 | INFO     | . payload setup = 6 s
[2025-11-28 00:02:42] 2025-11-27 22:53:00,580 | INFO     | . stage-in = 0 s
[2025-11-28 00:02:42] 2025-11-27 22:53:00,580 | INFO     | . payload execution = 60350 s
[2025-11-28 00:02:42] 2025-11-27 22:53:00,580 | INFO     | . stage-out = 2 s
[2025-11-28 00:02:42] 2025-11-27 22:53:00,580 | INFO     | . log creation = 0 s
[2025-11-28 00:02:42] 2025-11-27 22:53:00,581 | INFO     | ..............................
[2025-11-28 00:02:42] 2025-11-27 22:53:00,633 | INFO     | time since job start (60392s) is within the limit (172800.0s)
[2025-11-28 00:02:42] 2025-11-27 22:53:00,684 | INFO     | 
[2025-11-28 00:02:42] 2025-11-27 22:53:00,684 | INFO     | job summary report
[2025-11-28 00:02:42] 2025-11-27 22:53:00,685 | INFO     | --------------------------------------------------
[2025-11-28 00:02:42] 2025-11-27 22:53:00,685 | INFO     | PanDA job id: 6893878715
[2025-11-28 00:02:42] 2025-11-27 22:53:00,685 | INFO     | task id: 47523449
[2025-11-28 00:02:42] 2025-11-27 22:53:00,685 | INFO     | errors: (none)
[2025-11-28 00:02:42] 2025-11-27 22:53:00,685 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 00:02:42] 2025-11-27 22:53:00,685 | INFO     | pilot state: finished 
[2025-11-28 00:02:42] 2025-11-27 22:53:00,685 | INFO     | transexitcode: 0
[2025-11-28 00:02:42] 2025-11-27 22:53:00,685 | INFO     | exeerrorcode: 0
[2025-11-28 00:02:42] 2025-11-27 22:53:00,685 | INFO     | exeerrordiag: 
[2025-11-28 00:02:42] 2025-11-27 22:53:00,685 | INFO     | exitcode: 0
[2025-11-28 00:02:42] 2025-11-27 22:53:00,685 | INFO     | exitmsg: OK
[2025-11-28 00:02:42] 2025-11-27 22:53:00,686 | INFO     | cpuconsumptiontime: 239268 s
[2025-11-28 00:02:42] 2025-11-27 22:53:00,686 | INFO     | nevents: 1000
[2025-11-28 00:02:42] 2025-11-27 22:53:00,686 | INFO     | neventsw: 0
[2025-11-28 00:02:42] 2025-11-27 22:53:00,686 | INFO     | pid: 1488300
[2025-11-28 00:02:42] 2025-11-27 22:53:00,686 | INFO     | pgrp: 1488300
[2025-11-28 00:02:42] 2025-11-27 22:53:00,686 | INFO     | corecount: 4
[2025-11-28 00:02:42] 2025-11-27 22:53:00,686 | INFO     | event service: False
[2025-11-28 00:02:42] 2025-11-27 22:53:00,686 | INFO     | sizes: {0: 2284104, 1: 2284303, 6: 2284565, 12: 2284593, 60360: 2335539, 60361: 2335538, 60365: 2344738, 60367: 2344794, 60376: 2345040}
[2025-11-28 00:02:42] 2025-11-27 22:53:00,686 | INFO     | --------------------------------------------------
[2025-11-28 00:02:42] 2025-11-27 22:53:00,686 | INFO     | 
[2025-11-28 00:02:42] 2025-11-27 22:53:00,686 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2025-11-28 00:02:42] 2025-11-27 22:53:00,709 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 00:02:42] 2025-11-27 22:53:00,709 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 00:02:42] 2025-11-27 22:53:00,709 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 00:02:42] 2025-11-27 22:53:00,709 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 00:02:42] 2025-11-27 22:53:00,709 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 00:02:42] 2025-11-27 22:53:00,710 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 00:02:42] 2025-11-27 22:53:00,710 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 00:02:42] 2025-11-27 22:53:00,710 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 00:02:42] 2025-11-27 22:53:00,710 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 00:02:42] 2025-11-27 22:53:00,710 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 00:02:42] 2025-11-27 22:53:00,710 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 00:02:42] 2025-11-27 22:53:00,710 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 00:02:42] 2025-11-27 22:53:00,710 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 00:02:42] 2025-11-27 22:53:00,710 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 00:02:42] 2025-11-27 22:53:00,711 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 00:02:42] 2025-11-27 22:53:00,711 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 00:02:42] 2025-11-27 22:53:00,711 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 00:02:42] 2025-11-27 22:53:00,711 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 00:02:42] 2025-11-27 22:53:00,711 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 00:02:42] 2025-11-27 22:53:00,711 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 00:02:42] 2025-11-27 22:53:00,711 | INFO     | job 6893878715 has completed (purged errors)
[2025-11-28 00:02:42] 2025-11-27 22:53:00,712 | INFO     | overall cleanup function is called
[2025-11-28 00:02:42] 2025-11-27 22:53:01,725 | INFO     | --- collectZombieJob: --- 10, [1488300]
[2025-11-28 00:02:42] 2025-11-27 22:53:01,726 | INFO     | zombie collector waiting for pid 1488300
[2025-11-28 00:02:42] 2025-11-27 22:53:01,726 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 00:02:42] 2025-11-27 22:53:01,726 | INFO     | collected zombie processes
[2025-11-28 00:02:42] 2025-11-27 22:53:01,726 | INFO     | will attempt to kill all subprocesses of pid=1488300
[2025-11-28 00:02:42] 2025-11-27 22:53:02,150 | INFO     | process IDs to be killed: [1488300] (in reverse order)
[2025-11-28 00:02:42] 2025-11-27 22:53:02,268 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 00:02:42] 2025-11-27 22:53:02,269 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 00:02:42] 2025-11-27 22:53:02,283 | INFO     | did not find any defunct processes belonging to 1488300
[2025-11-28 00:02:42] 2025-11-27 22:53:02,296 | INFO     | did not find any defunct processes belonging to 1488300
[2025-11-28 00:02:42] 2025-11-27 22:53:02,298 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 00:02:42] 2025-11-27 22:53:02,298 | INFO     | ready for new job
[2025-11-28 00:02:42] 2025-11-27 22:53:02,299 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 00:02:42] 2025-11-27 22:53:02,304 | INFO     | ***************************************
[2025-11-28 00:02:42] 2025-11-27 22:53:02,304 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 00:02:42] 2025-11-27 22:53:02,304 | INFO     | ***************************************
[2025-11-28 00:02:42] 2025-11-27 22:53:02,304 | INFO     | 
[2025-11-28 00:02:42] 2025-11-27 22:53:02,309 | INFO     | architecture information:
[2025-11-28 00:02:42] 2025-11-27 22:53:02,309 | INFO     | executing command: cat /etc/os-release
[2025-11-28 00:02:42] 2025-11-27 22:53:02,325 | INFO     | cat /etc/os-release:
[2025-11-28 00:02:42] NAME="CentOS Linux"
[2025-11-28 00:02:42] VERSION="7 (Core)"
[2025-11-28 00:02:42] ID="centos"
[2025-11-28 00:02:42] ID_LIKE="rhel fedora"
[2025-11-28 00:02:42] VERSION_ID="7"
[2025-11-28 00:02:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 00:02:42] ANSI_COLOR="0;31"
[2025-11-28 00:02:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 00:02:42] HOME_URL="https://www.centos.org/"
[2025-11-28 00:02:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 00:02:42] 
[2025-11-28 00:02:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 00:02:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 00:02:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 00:02:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 00:02:42] 
[2025-11-28 00:02:42] 2025-11-27 22:53:02,325 | INFO     | ***************************************
[2025-11-28 00:02:42] 2025-11-27 22:53:02,828 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2025-11-28 00:02:42] 2025-11-27 22:53:02,844 | INFO     | sufficient remaining disk space (659182059520 B)
[2025-11-28 00:02:42] 2025-11-27 22:53:02,845 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 00:02:42] 2025-11-27 22:53:02,845 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 00:02:42] 2025-11-27 22:53:02,845 | INFO     | update_server=False
[2025-11-28 00:02:42] 2025-11-27 22:53:02,845 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 00:02:42] 2025-11-27 22:53:02,845 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 00:02:42] 2025-11-27 22:53:03,003 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 00:02:42] 2025-11-27 22:53:03,150 | INFO     | all data control threads have been joined
[2025-11-28 00:02:42] 2025-11-27 22:53:03,305 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 00:02:42] 2025-11-27 22:53:03,305 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 00:02:42] 2025-11-27 22:53:03,305 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:02:42] 2025-11-27 22:53:03,305 | INFO     | will abort loop
[2025-11-28 00:02:42] 2025-11-27 22:53:03,545 | INFO     | all payload control threads have been joined
[2025-11-28 00:02:42] 2025-11-27 22:53:03,850 | INFO     | [job] retrieve thread has finished
[2025-11-28 00:02:42] 2025-11-27 22:53:03,851 | INFO     | [data] copytool_in thread has finished
[2025-11-28 00:02:42] 2025-11-27 22:53:03,867 | INFO     | [job] validate thread has finished
[2025-11-28 00:02:42] 2025-11-27 22:53:04,007 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 00:02:42] 2025-11-27 22:53:04,099 | INFO     | all job control threads have been joined
[2025-11-28 00:02:42] 2025-11-27 22:53:04,156 | INFO     | [data] control thread has finished
[2025-11-28 00:02:42] 2025-11-27 22:53:04,237 | INFO     | [payload] failed_post thread has finished
[2025-11-28 00:02:42] 2025-11-27 22:53:04,311 | INFO     | [job] job monitor thread has finished
[2025-11-28 00:02:42] 2025-11-27 22:53:04,414 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 00:02:42] 2025-11-27 22:53:04,467 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 00:02:42] 2025-11-27 22:53:04,550 | INFO     | [payload] control thread has finished
[2025-11-28 00:02:42] 2025-11-27 22:53:04,582 | INFO     | [payload] validate_post thread has finished
[2025-11-28 00:02:42] 2025-11-27 22:53:05,008 | INFO     | [data] copytool_out thread has finished
[2025-11-28 00:02:42] 2025-11-27 22:53:05,104 | INFO     | [job] control thread has finished
[2025-11-28 00:02:42] 2025-11-27 22:53:05,694 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:02:42] 2025-11-27 22:53:06,700 | INFO     | [job] queue monitor thread has finished
[2025-11-28 00:02:42] 2025-11-27 22:53:06,851 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 00:02:42] 2025-11-27 22:53:13,236 | INFO     | job.realtimelogging is not enabled
[2025-11-28 00:02:42] 2025-11-27 22:53:14,241 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 00:02:42] 2025-11-27 22:53:34,193 | INFO     | PID=1481398 has CPU usage=9.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 00:02:42] 2025-11-27 22:53:34,193 | INFO     | .. there are 2 such processes running
[2025-11-28 00:02:42] 2025-11-27 22:53:34,194 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 00:02:42] 2025-11-27 22:53:34,194 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 00:02:42] 2025-11-27 22:53:34,194 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 00:02:42] 2025-11-27 22:54:02,895 | INFO     | [monitor] cgroup control has ended
[2025-11-28 00:02:42] 2025-11-27 22:54:03,121 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22986329937728)>', '<ExcThread(monitor, started 22986092414720)>']
[2025-11-28 00:02:42] 2025-11-27 22:54:03,313 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 00:02:42] 2025-11-27 22:54:03,314 | INFO     | [monitor] control thread has ended
[2025-11-28 00:02:42] 2025-11-27 22:54:08,146 | INFO     | all workflow threads have been joined
[2025-11-28 00:02:42] 2025-11-27 22:54:08,147 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 00:02:42] 2025-11-27 22:54:08,147 | INFO     | traces error code: 0
[2025-11-28 00:02:42] 2025-11-27 22:54:08,147 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 00:02:42] 2025-11-27 22:54:08,315 [wrapper] ==== pilot stdout END ====
[2025-11-28 00:02:42] 2025-11-27 22:54:08,318 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 00:02:42] 2025-11-27 22:54:08,321 [wrapper] pilotpid: 1481398
[2025-11-28 00:02:42] 2025-11-27 22:54:08,325 [wrapper] Pilot exit status: 0
[2025-11-28 00:02:42] 2025-11-27 22:54:08,336 [wrapper] pandaids: 6893878715
[2025-11-28 00:02:42] 2025-11-27 22:54:08,417 [wrapper] cleanup supervisor_pilot 2119813 1481399
[2025-11-28 00:02:42] 2025-11-27 22:54:08,420 [wrapper] Test setup, not cleaning
[2025-11-28 00:02:42] 2025-11-27 22:54:08,424 [wrapper] apfmon messages muted
[2025-11-28 00:02:42] 2025-11-27 22:54:08,427 [wrapper] ==== wrapper stdout END ====
[2025-11-28 00:02:42] 2025-11-27 22:54:08,430 [wrapper] ==== wrapper stderr END ====
[2025-11-28 00:02:42]  *** Error codes and diagnostics ***
[2025-11-28 00:02:42]     "exeErrorCode": 0,
[2025-11-28 00:02:42]     "exeErrorDiag": "",
[2025-11-28 00:02:42]     "pilotErrorCode": 0,
[2025-11-28 00:02:42]     "pilotErrorDiag": "",
[2025-11-28 00:02:42]  *** Listing of results directory ***
[2025-11-28 00:02:42] total 1329228
[2025-11-28 00:02:42] -rw-r--r-- 1 boinc boinc    576529 Nov 20 19:04 pilot3.tar.gz
[2025-11-28 00:02:42] -rwx------ 1 boinc boinc     36292 Nov 20 19:58 runpilot2-wrapper.sh
[2025-11-28 00:02:42] -rw-r--r-- 1 boinc boinc      5112 Nov 20 19:58 queuedata.json
[2025-11-28 00:02:42] -rw-r--r-- 1 boinc boinc       100 Nov 27 07:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 00:02:42] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 07:06 run_atlas
[2025-11-28 00:02:42] -rw-r--r-- 1 boinc boinc       105 Nov 27 07:06 job.xml
[2025-11-28 00:02:42] -rw-r--r-- 2 boinc boinc 410124524 Nov 27 07:06 EVNT.47493127._000813.pool.root.1
[2025-11-28 00:02:42] -rw-r--r-- 1 boinc boinc      6635 Nov 27 07:06 init_data.xml
[2025-11-28 00:02:42] -rw-r--r-- 2 boinc boinc     15847 Nov 27 07:06 start_atlas.sh
[2025-11-28 00:02:42] drwxrwx--x 2 boinc boinc      4096 Nov 27 07:06 shared
[2025-11-28 00:02:42] -rw-r--r-- 2 boinc boinc    590101 Nov 27 07:06 input.tar.gz
[2025-11-28 00:02:42] -rw-r--r-- 1 boinc boinc         0 Nov 27 07:06 boinc_lockfile
[2025-11-28 00:02:42] -rw-r--r-- 1 boinc boinc      2785 Nov 27 07:06 pandaJob.out
[2025-11-28 00:02:42] -rw------- 1 boinc boinc    991578 Nov 27 07:06 agis_schedconf.cvmfs.json
[2025-11-28 00:02:42] drwx------ 5 boinc boinc      4096 Nov 27 07:06 pilot3
[2025-11-28 00:02:42] -rw-r--r-- 1 boinc boinc       532 Nov 27 23:42 boinc_task_state.xml
[2025-11-28 00:02:42] -rw------- 1 boinc boinc 926708636 Nov 27 23:52 HITS.47523449._008126.pool.root.1
[2025-11-28 00:02:42] -rw------- 1 boinc boinc      1057 Nov 27 23:52 memory_monitor_summary.json
[2025-11-28 00:02:42] -rw------- 1 boinc boinc   1516240 Nov 27 23:52 agis_ddmendpoints.agis.ALL.json
[2025-11-28 00:02:42] -rw------- 1 boinc boinc   1733866 Nov 27 23:52 log.47523449._008126.job.log.tgz.1
[2025-11-28 00:02:42] -rw------- 1 boinc boinc      7961 Nov 27 23:53 heartbeat.json
[2025-11-28 00:02:42] -rw------- 1 boinc boinc        95 Nov 27 23:53 pilot_heartbeat.json
[2025-11-28 00:02:42] -rw------- 1 boinc boinc      5091 Nov 27 23:54 pilotlog.txt
[2025-11-28 00:02:42] -rw------- 1 boinc boinc   8452981 Nov 27 23:54 log.47523449._008126.job.log.1
[2025-11-28 00:02:42] -rw------- 1 boinc boinc       353 Nov 27 23:54 output.list
[2025-11-28 00:02:42] -rw-r--r-- 1 boinc boinc       620 Nov 27 23:54 runtime_log
[2025-11-28 00:02:42] -rw------- 1 boinc boinc  10209280 Nov 27 23:54 result.tar.gz
[2025-11-28 00:02:42] -rw------- 1 boinc boinc       670 Nov 27 23:54 Ga6MDmO2Og8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxyGKDmsGzMwn.diag
[2025-11-28 00:02:42] -rw-r--r-- 1 boinc boinc      9206 Nov 27 23:54 runtime_log.err
[2025-11-28 00:02:42] -rw-r--r-- 1 boinc boinc        28 Nov 28 00:02 wrapper_checkpoint.txt
[2025-11-28 00:02:42] -rw-r--r-- 1 boinc boinc      8192 Nov 28 00:02 boinc_mmap_file
[2025-11-28 00:02:42] -rw-r--r-- 1 boinc boinc     21043 Nov 28 00:02 stderr.txt
[2025-11-28 00:02:42] HITS file was successfully produced:
[2025-11-28 00:02:42] -rw------- 1 boinc boinc 926708636 Nov 27 23:52 shared/HITS.pool.root.1
[2025-11-28 00:02:42]  *** Contents of shared directory: ***
[2025-11-28 00:02:42] total 1316084
[2025-11-28 00:02:42] -rw-r--r-- 2 boinc boinc 410124524 Nov 27 07:06 ATLAS.root_0
[2025-11-28 00:02:42] -rw-r--r-- 2 boinc boinc     15847 Nov 27 07:06 start_atlas.sh
[2025-11-28 00:02:42] -rw-r--r-- 2 boinc boinc    590101 Nov 27 07:06 input.tar.gz
[2025-11-28 00:02:42] -rw------- 1 boinc boinc 926708636 Nov 27 23:52 HITS.pool.root.1
[2025-11-28 00:02:42] -rw------- 1 boinc boinc  10209280 Nov 27 23:54 result.tar.gz
00:02:44 (1477644): run_atlas exited; CPU time 241688.823334
00:02:44 (1477644): called boinc_finish(0)

</stderr_txt>
]]>

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