Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:48:19 (1151024): wrapper (7.7.26015): starting
01:48:19 (1151024): wrapper: running run_atlas (--nthreads 4)
[2025-11-25 01:48:19] Arguments: --nthreads 4
[2025-11-25 01:48:19] Threads: 4
[2025-11-25 01:48:19] Checking for CVMFS
[2025-11-25 01:48:19] No cvmfs_config command found, will try listing directly
[2025-11-25 01:48:19] CVMFS is ok
[2025-11-25 01:48:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 01:48:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 01:48:19] Further information can be found at the LHC@home message board.
[2025-11-25 01:48:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 01:48:19] Checking for apptainer binary...
[2025-11-25 01:48:19] which: no apptainer in ((null))
[2025-11-25 01:48:19] apptainer is not installed, using version from CVMFS
[2025-11-25 01:48:19] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 01:48:20] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-11-25 01:48:20] apptainer works
[2025-11-25 01:48:20] Set ATHENA_PROC_NUMBER=4
[2025-11-25 01:48:20] Set ATHENA_CORE_NUMBER=4
[2025-11-25 01:48:20] Starting ATLAS job with PandaID=6893864170
[2025-11-25 01:48:20] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 17:32:53]  *** The last 200 lines of the pilot log: ***
[2025-11-25 17:32:53] 2025-11-25 16:28:25,307 | INFO     | time since job start (56391s) is within the limit (172800.0s)
[2025-11-25 17:32:53] 2025-11-25 16:28:26,142 | INFO     | monitor loop #3802: job 0:6893864170 is in state 'finished'
[2025-11-25 17:32:53] 2025-11-25 16:28:26,142 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 17:32:53] 2025-11-25 16:28:26,844 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 17:32:53] 2025-11-25 16:28:26,863 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2711.2734218750006
[2025-11-25 17:32:53] 2025-11-25 16:28:26,887 | INFO     | using path: /scratch/boinc/var/slot116/slots/0/PanDA_Pilot-6893864170/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 17:32:53] 2025-11-25 16:28:26,888 | INFO     | extracted standard info from prmon json
[2025-11-25 17:32:53] 2025-11-25 16:28:26,888 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 17:32:53] 2025-11-25 16:28:26,888 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 17:32:53] 2025-11-25 16:28:26,904 | INFO     | fitting pss+swap vs Time
[2025-11-25 17:32:53] 2025-11-25 16:28:26,905 | INFO     | sum of square deviations: 244621051675.0
[2025-11-25 17:32:53] 2025-11-25 16:28:26,925 | INFO     | sum of deviations: 719967324372.4999
[2025-11-25 17:32:53] 2025-11-25 16:28:26,925 | INFO     | mean x: 1764059901.5
[2025-11-25 17:32:53] 2025-11-25 16:28:26,925 | INFO     | mean y: 2270609.576839827
[2025-11-25 17:32:53] 2025-11-25 16:28:26,925 | INFO     | intersect: -5189700721.668851
[2025-11-25 17:32:53] 2025-11-25 16:28:26,926 | INFO     | chi2: 4.522642376103206
[2025-11-25 17:32:53] 2025-11-25 16:28:26,928 | INFO     | sum of square deviations: 240671377620.0
[2025-11-25 17:32:53] 2025-11-25 16:28:26,948 | INFO     | sum of deviations: 920501037339.9999
[2025-11-25 17:32:53] 2025-11-25 16:28:26,949 | INFO     | mean x: 1764059749.0
[2025-11-25 17:32:53] 2025-11-25 16:28:26,949 | INFO     | mean y: 2278349.756256801
[2025-11-25 17:32:53] 2025-11-25 16:28:26,949 | INFO     | intersect: -6744759228.796661
[2025-11-25 17:32:53] 2025-11-25 16:28:26,950 | INFO     | chi2: 2.1849038572726105
[2025-11-25 17:32:53] 2025-11-25 16:28:26,950 | INFO     | current chi2=2.1849038572726105 (change=51.6896611410791 %)
[2025-11-25 17:32:53] 2025-11-25 16:28:26,951 | INFO     | sum of square deviations: 236764448552.5
[2025-11-25 17:32:53] 2025-11-25 16:28:26,973 | INFO     | sum of deviations: 941710548239.9994
[2025-11-25 17:32:53] 2025-11-25 16:28:26,973 | INFO     | mean x: 1764059596.5
[2025-11-25 17:32:53] 2025-11-25 16:28:26,973 | INFO     | mean y: 2279173.617067834
[2025-11-25 17:32:53] 2025-11-25 16:28:26,973 | INFO     | intersect: -7014118515.750076
[2025-11-25 17:32:53] 2025-11-25 16:28:26,974 | INFO     | chi2: 2.0616790256922175
[2025-11-25 17:32:53] 2025-11-25 16:28:26,974 | INFO     | current chi2=2.0616790256922175 (change=5.639828552191449 %)
[2025-11-25 17:32:53] 2025-11-25 16:28:26,974 | INFO     | right removable region: 913
[2025-11-25 17:32:53] 2025-11-25 16:28:26,975 | INFO     | sum of square deviations: 240671377620.0
[2025-11-25 17:32:53] 2025-11-25 16:28:26,996 | INFO     | sum of deviations: 544642603042.99786
[2025-11-25 17:32:53] 2025-11-25 16:28:26,996 | INFO     | mean x: 1764060054.0
[2025-11-25 17:32:53] 2025-11-25 16:28:26,997 | INFO     | mean y: 2277367.1294885743
[2025-11-25 17:32:53] 2025-11-25 16:28:26,997 | INFO     | intersect: -3989814543.5742693
[2025-11-25 17:32:53] 2025-11-25 16:28:26,998 | INFO     | chi2: 2.5746155127828843
[2025-11-25 17:32:53] 2025-11-25 16:28:26,998 | INFO     | current chi2=2.5746155127828843 (change=43.072759270406394 %)
[2025-11-25 17:32:53] 2025-11-25 16:28:26,999 | INFO     | sum of square deviations: 236764448552.5
[2025-11-25 17:32:53] 2025-11-25 16:28:27,020 | INFO     | sum of deviations: 515045845445.5
[2025-11-25 17:32:53] 2025-11-25 16:28:27,021 | INFO     | mean x: 1764060206.5
[2025-11-25 17:32:53] 2025-11-25 16:28:27,021 | INFO     | mean y: 2278521.6859956235
[2025-11-25 17:32:53] 2025-11-25 16:28:27,021 | INFO     | intersect: -3835172100.771327
[2025-11-25 17:32:53] 2025-11-25 16:28:27,022 | INFO     | chi2: 2.553650117842206
[2025-11-25 17:32:53] 2025-11-25 16:28:27,022 | INFO     | current chi2=2.553650117842206 (change=0.8143116840780987 %)
[2025-11-25 17:32:53] 2025-11-25 16:28:27,022 | INFO     | left removable region: 20
[2025-11-25 17:32:53] 2025-11-25 16:28:27,023 | INFO     | sum of square deviations: 220816873262.0
[2025-11-25 17:32:53] 2025-11-25 16:28:27,043 | INFO     | sum of deviations: 695228795264.9999
[2025-11-25 17:32:53] 2025-11-25 16:28:27,043 | INFO     | mean x: 1764060176.0
[2025-11-25 17:32:53] 2025-11-25 16:28:27,043 | INFO     | mean y: 2288800.537513998
[2025-11-25 17:32:53] 2025-11-25 16:28:27,044 | INFO     | intersect: -5551749769.152247
[2025-11-25 17:32:53] 2025-11-25 16:28:27,044 | INFO     | chi2: 0.07336574642370405
[2025-11-25 17:32:53] 2025-11-25 16:28:27,045 | INFO     | current memory leak: 3.15 B/s (using 893 data points, chi2=0.07)
[2025-11-25 17:32:53] 2025-11-25 16:28:27,046 | INFO     | could have reported an average CPU frequency of 2690 MHz (35 samples)
[2025-11-25 17:32:53] 2025-11-25 16:28:27,046 | INFO     | ..............................
[2025-11-25 17:32:53] 2025-11-25 16:28:27,046 | INFO     | . Timing measurements:
[2025-11-25 17:32:53] 2025-11-25 16:28:27,046 | INFO     | . get job = 0 s
[2025-11-25 17:32:53] 2025-11-25 16:28:27,046 | INFO     | . initial setup = 1 s
[2025-11-25 17:32:53] 2025-11-25 16:28:27,046 | INFO     | . payload setup = 9 s
[2025-11-25 17:32:53] 2025-11-25 16:28:27,046 | INFO     | . stage-in = 0 s
[2025-11-25 17:32:53] 2025-11-25 16:28:27,047 | INFO     | . payload execution = 56348 s
[2025-11-25 17:32:53] 2025-11-25 16:28:27,047 | INFO     | . stage-out = 2 s
[2025-11-25 17:32:53] 2025-11-25 16:28:27,047 | INFO     | . log creation = 0 s
[2025-11-25 17:32:53] 2025-11-25 16:28:27,047 | INFO     | ..............................
[2025-11-25 17:32:53] 2025-11-25 16:28:27,183 | INFO     | 
[2025-11-25 17:32:53] 2025-11-25 16:28:27,183 | INFO     | job summary report
[2025-11-25 17:32:53] 2025-11-25 16:28:27,183 | INFO     | --------------------------------------------------
[2025-11-25 17:32:53] 2025-11-25 16:28:27,183 | INFO     | PanDA job id: 6893864170
[2025-11-25 17:32:53] 2025-11-25 16:28:27,183 | INFO     | task id: 47523449
[2025-11-25 17:32:53] 2025-11-25 16:28:27,183 | INFO     | errors: (none)
[2025-11-25 17:32:53] 2025-11-25 16:28:27,183 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 17:32:53] 2025-11-25 16:28:27,184 | INFO     | pilot state: finished 
[2025-11-25 17:32:53] 2025-11-25 16:28:27,184 | INFO     | transexitcode: 0
[2025-11-25 17:32:53] 2025-11-25 16:28:27,184 | INFO     | exeerrorcode: 0
[2025-11-25 17:32:53] 2025-11-25 16:28:27,184 | INFO     | exeerrordiag: 
[2025-11-25 17:32:53] 2025-11-25 16:28:27,184 | INFO     | exitcode: 0
[2025-11-25 17:32:53] 2025-11-25 16:28:27,184 | INFO     | exitmsg: OK
[2025-11-25 17:32:53] 2025-11-25 16:28:27,184 | INFO     | cpuconsumptiontime: 223018 s
[2025-11-25 17:32:53] 2025-11-25 16:28:27,184 | INFO     | nevents: 1000
[2025-11-25 17:32:53] 2025-11-25 16:28:27,184 | INFO     | neventsw: 0
[2025-11-25 17:32:53] 2025-11-25 16:28:27,184 | INFO     | pid: 1175688
[2025-11-25 17:32:53] 2025-11-25 16:28:27,184 | INFO     | pgrp: 1175688
[2025-11-25 17:32:53] 2025-11-25 16:28:27,184 | INFO     | corecount: 4
[2025-11-25 17:32:53] 2025-11-25 16:28:27,184 | INFO     | event service: False
[2025-11-25 17:32:53] 2025-11-25 16:28:27,185 | INFO     | sizes: {0: 2284316, 7: 2284578, 11: 2284606, 56362: 2337728, 56363: 2337727, 56366: 2346834, 56367: 2347018, 56374: 2347264}
[2025-11-25 17:32:53] 2025-11-25 16:28:27,185 | INFO     | --------------------------------------------------
[2025-11-25 17:32:53] 2025-11-25 16:28:27,185 | INFO     | 
[2025-11-25 17:32:53] 2025-11-25 16:28:27,185 | INFO     | executing command: ls -lF /scratch/boinc/var/slot116/slots/0
[2025-11-25 17:32:53] 2025-11-25 16:28:27,215 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 17:32:53] 2025-11-25 16:28:27,216 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 17:32:53] 2025-11-25 16:28:27,216 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 17:32:53] 2025-11-25 16:28:27,216 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 17:32:53] 2025-11-25 16:28:27,216 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 17:32:53] 2025-11-25 16:28:27,216 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 17:32:53] 2025-11-25 16:28:27,216 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 17:32:53] 2025-11-25 16:28:27,216 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 17:32:53] 2025-11-25 16:28:27,216 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 17:32:53] 2025-11-25 16:28:27,217 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 17:32:53] 2025-11-25 16:28:27,217 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 17:32:53] 2025-11-25 16:28:27,217 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 17:32:53] 2025-11-25 16:28:27,217 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 17:32:53] 2025-11-25 16:28:27,217 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 17:32:53] 2025-11-25 16:28:27,217 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 17:32:53] 2025-11-25 16:28:27,217 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 17:32:53] 2025-11-25 16:28:27,217 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 17:32:53] 2025-11-25 16:28:27,217 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 17:32:53] 2025-11-25 16:28:27,217 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 17:32:53] 2025-11-25 16:28:27,217 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 17:32:53] 2025-11-25 16:28:27,218 | INFO     | job 6893864170 has completed (purged errors)
[2025-11-25 17:32:53] 2025-11-25 16:28:27,218 | INFO     | overall cleanup function is called
[2025-11-25 17:32:53] 2025-11-25 16:28:28,233 | INFO     | --- collectZombieJob: --- 10, [1175688]
[2025-11-25 17:32:53] 2025-11-25 16:28:28,234 | INFO     | zombie collector waiting for pid 1175688
[2025-11-25 17:32:53] 2025-11-25 16:28:28,234 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 17:32:53] 2025-11-25 16:28:28,234 | INFO     | collected zombie processes
[2025-11-25 17:32:53] 2025-11-25 16:28:28,234 | INFO     | will attempt to kill all subprocesses of pid=1175688
[2025-11-25 17:32:53] 2025-11-25 16:28:29,053 | INFO     | process IDs to be killed: [1175688] (in reverse order)
[2025-11-25 17:32:53] 2025-11-25 16:28:29,289 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 17:32:53] 2025-11-25 16:28:29,290 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 17:32:53] 2025-11-25 16:28:29,324 | INFO     | did not find any defunct processes belonging to 1175688
[2025-11-25 17:32:53] 2025-11-25 16:28:29,358 | INFO     | did not find any defunct processes belonging to 1175688
[2025-11-25 17:32:53] 2025-11-25 16:28:29,359 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 17:32:53] 2025-11-25 16:28:29,360 | INFO     | ready for new job
[2025-11-25 17:32:53] 2025-11-25 16:28:29,360 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 17:32:53] 2025-11-25 16:28:29,366 | INFO     | ***************************************
[2025-11-25 17:32:53] 2025-11-25 16:28:29,366 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 17:32:53] 2025-11-25 16:28:29,366 | INFO     | ***************************************
[2025-11-25 17:32:53] 2025-11-25 16:28:29,367 | INFO     | 
[2025-11-25 17:32:53] 2025-11-25 16:28:29,374 | INFO     | architecture information:
[2025-11-25 17:32:53] 2025-11-25 16:28:29,375 | INFO     | executing command: cat /etc/os-release
[2025-11-25 17:32:53] 2025-11-25 16:28:29,397 | INFO     | cat /etc/os-release:
[2025-11-25 17:32:53] NAME="CentOS Linux"
[2025-11-25 17:32:53] VERSION="7 (Core)"
[2025-11-25 17:32:53] ID="centos"
[2025-11-25 17:32:53] ID_LIKE="rhel fedora"
[2025-11-25 17:32:53] VERSION_ID="7"
[2025-11-25 17:32:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 17:32:53] ANSI_COLOR="0;31"
[2025-11-25 17:32:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 17:32:53] HOME_URL="https://www.centos.org/"
[2025-11-25 17:32:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 17:32:53] 
[2025-11-25 17:32:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 17:32:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 17:32:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 17:32:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 17:32:53] 
[2025-11-25 17:32:53] 2025-11-25 16:28:29,397 | INFO     | ***************************************
[2025-11-25 17:32:53] 2025-11-25 16:28:29,900 | INFO     | executing command: df -mP /scratch/boinc/var/slot116/slots/0
[2025-11-25 17:32:53] 2025-11-25 16:28:29,925 | INFO     | sufficient remaining disk space (3267219161088 B)
[2025-11-25 17:32:53] 2025-11-25 16:28:29,925 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 17:32:53] 2025-11-25 16:28:29,925 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 17:32:53] 2025-11-25 16:28:29,925 | INFO     | update_server=False
[2025-11-25 17:32:53] 2025-11-25 16:28:29,926 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 17:32:53] 2025-11-25 16:28:29,926 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 17:32:53] 2025-11-25 16:28:29,926 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 17:32:53] 2025-11-25 16:28:29,927 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 17:32:53] 2025-11-25 16:28:29,927 | INFO     | aborting loop
[2025-11-25 17:32:53] 2025-11-25 16:28:30,084 | INFO     | all data control threads have been joined
[2025-11-25 17:32:53] 2025-11-25 16:28:30,711 | INFO     | all payload control threads have been joined
[2025-11-25 17:32:53] 2025-11-25 16:28:30,931 | INFO     | [job] job monitor thread has finished
[2025-11-25 17:32:53] 2025-11-25 16:28:30,932 | INFO     | [job] retrieve thread has finished
[2025-11-25 17:32:53] 2025-11-25 16:28:31,090 | INFO     | [data] control thread has finished
[2025-11-25 17:32:53] 2025-11-25 16:28:31,473 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 17:32:53] 2025-11-25 16:28:31,591 | INFO     | all job control threads have been joined
[2025-11-25 17:32:53] 2025-11-25 16:28:31,647 | INFO     | [data] copytool_in thread has finished
[2025-11-25 17:32:53] 2025-11-25 16:28:31,716 | INFO     | [payload] control thread has finished
[2025-11-25 17:32:53] 2025-11-25 16:28:31,734 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 17:32:53] 2025-11-25 16:28:31,882 | INFO     | [job] validate thread has finished
[2025-11-25 17:32:53] 2025-11-25 16:28:31,928 | INFO     | [data] copytool_out thread has finished
[2025-11-25 17:32:53] 2025-11-25 16:28:31,929 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 17:32:53] 2025-11-25 16:28:31,980 | INFO     | [payload] failed_post thread has finished
[2025-11-25 17:32:53] 2025-11-25 16:28:32,153 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 17:32:53] 2025-11-25 16:28:32,337 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 17:32:53] 2025-11-25 16:28:32,516 | INFO     | [payload] validate_post thread has finished
[2025-11-25 17:32:53] 2025-11-25 16:28:32,597 | INFO     | [job] control thread has finished
[2025-11-25 17:32:53] 2025-11-25 16:28:33,158 | INFO     | [job] queue monitor thread has finished
[2025-11-25 17:32:53] 2025-11-25 16:28:33,933 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 17:32:53] 2025-11-25 16:28:59,418 | INFO     | PID=1158783 has CPU usage=13.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-25 17:32:53] 2025-11-25 16:28:59,418 | INFO     | .. there are 5 such processes running
[2025-11-25 17:32:53] 2025-11-25 16:28:59,418 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 17:32:53] 2025-11-25 16:28:59,418 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 17:32:53] 2025-11-25 16:28:59,418 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 17:32:53] 2025-11-25 16:29:05,299 | INFO     | [monitor] cgroup control has ended
[2025-11-25 17:32:53] 2025-11-25 16:29:06,655 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23211614603072)>', '<ExcThread(monitor, started 23211374769920)>']
[2025-11-25 17:32:53] 2025-11-25 16:29:07,453 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 17:32:53] 2025-11-25 16:29:07,454 | INFO     | [monitor] control thread has ended
[2025-11-25 17:32:53] 2025-11-25 16:29:11,658 | INFO     | all workflow threads have been joined
[2025-11-25 17:32:53] 2025-11-25 16:29:11,658 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 17:32:53] 2025-11-25 16:29:11,658 | INFO     | traces error code: 0
[2025-11-25 17:32:53] 2025-11-25 16:29:11,658 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 17:32:53] 2025-11-25 16:29:11,805 [wrapper] ==== pilot stdout END ====
[2025-11-25 17:32:53] 2025-11-25 16:29:11,810 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 17:32:53] 2025-11-25 16:29:11,814 [wrapper] pilotpid: 1158783
[2025-11-25 17:32:53] 2025-11-25 16:29:11,818 [wrapper] Pilot exit status: 0
[2025-11-25 17:32:53] 2025-11-25 16:29:11,833 [wrapper] pandaids: 6893864170
[2025-11-25 17:32:53] 2025-11-25 16:29:12,016 [wrapper] cleanup supervisor_pilot 2353235 1158784
[2025-11-25 17:32:53] 2025-11-25 16:29:12,021 [wrapper] Test setup, not cleaning
[2025-11-25 17:32:53] 2025-11-25 16:29:12,024 [wrapper] apfmon messages muted
[2025-11-25 17:32:53] 2025-11-25 16:29:12,028 [wrapper] ==== wrapper stdout END ====
[2025-11-25 17:32:53] 2025-11-25 16:29:12,031 [wrapper] ==== wrapper stderr END ====
[2025-11-25 17:32:53]  *** Error codes and diagnostics ***
[2025-11-25 17:32:53]     "exeErrorCode": 0,
[2025-11-25 17:32:53]     "exeErrorDiag": "",
[2025-11-25 17:32:53]     "pilotErrorCode": 0,
[2025-11-25 17:32:53]     "pilotErrorDiag": "",
[2025-11-25 17:32:53]  *** Listing of results directory ***
[2025-11-25 17:32:53] total 1316380
[2025-11-25 17:32:53] -rw-r--r-- 1 boinc boinc    576529 Nov 20 15:06 pilot3.tar.gz
[2025-11-25 17:32:53] -rw-r--r-- 1 boinc boinc      5112 Nov 20 15:17 queuedata.json
[2025-11-25 17:32:53] -rwx------ 1 boinc boinc     36292 Nov 20 15:18 runpilot2-wrapper.sh
[2025-11-25 17:32:53] -rw-r--r-- 1 boinc boinc       100 Nov 25 01:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 17:32:53] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 01:48 run_atlas
[2025-11-25 17:32:53] -rw-r--r-- 1 boinc boinc       105 Nov 25 01:48 job.xml
[2025-11-25 17:32:53] -rw-r--r-- 2 boinc boinc 409794560 Nov 25 01:48 EVNT.47493127._000600.pool.root.1
[2025-11-25 17:32:53] -rw-r--r-- 1 boinc boinc      6687 Nov 25 01:48 init_data.xml
[2025-11-25 17:32:53] -rw-r--r-- 2 boinc boinc     15847 Nov 25 01:48 start_atlas.sh
[2025-11-25 17:32:53] drwxrwx--x 2 boinc boinc      4096 Nov 25 01:48 shared
[2025-11-25 17:32:53] -rw-r--r-- 2 boinc boinc    590100 Nov 25 01:48 input.tar.gz
[2025-11-25 17:32:53] -rw-r--r-- 1 boinc boinc         0 Nov 25 01:48 boinc_lockfile
[2025-11-25 17:32:53] -rw-r--r-- 1 boinc boinc      2783 Nov 25 01:48 pandaJob.out
[2025-11-25 17:32:53] -rw------- 1 boinc boinc    991801 Nov 25 01:48 agis_schedconf.cvmfs.json
[2025-11-25 17:32:53] drwx------ 5 boinc boinc      4096 Nov 25 01:48 pilot3
[2025-11-25 17:32:53] -rw-r--r-- 1 boinc boinc       532 Nov 25 17:20 boinc_task_state.xml
[2025-11-25 17:32:53] -rw------- 1 boinc boinc 915371121 Nov 25 17:27 HITS.47523449._005991.pool.root.1
[2025-11-25 17:32:53] -rw------- 1 boinc boinc      1040 Nov 25 17:28 memory_monitor_summary.json
[2025-11-25 17:32:53] -rw------- 1 boinc boinc   1516240 Nov 25 17:28 agis_ddmendpoints.agis.ALL.json
[2025-11-25 17:32:53] -rw------- 1 boinc boinc   1659175 Nov 25 17:28 log.47523449._005991.job.log.tgz.1
[2025-11-25 17:32:53] -rw------- 1 boinc boinc        95 Nov 25 17:28 pilot_heartbeat.json
[2025-11-25 17:32:53] -rw------- 1 boinc boinc      8605 Nov 25 17:28 heartbeat.json
[2025-11-25 17:32:53] -rw------- 1 boinc boinc      4836 Nov 25 17:29 pilotlog.txt
[2025-11-25 17:32:53] -rw------- 1 boinc boinc   7783806 Nov 25 17:29 log.47523449._005991.job.log.1
[2025-11-25 17:32:53] -rw------- 1 boinc boinc       353 Nov 25 17:29 output.list
[2025-11-25 17:32:53] -rw-r--r-- 1 boinc boinc       620 Nov 25 17:29 runtime_log
[2025-11-25 17:32:53] -rw------- 1 boinc boinc   9461760 Nov 25 17:29 result.tar.gz
[2025-11-25 17:32:53] -rw-r--r-- 1 boinc boinc      9223 Nov 25 17:29 runtime_log.err
[2025-11-25 17:32:53] -rw------- 1 boinc boinc       670 Nov 25 17:29 OweLDmOfKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmn3HKDm9rx2un.diag
[2025-11-25 17:32:53] -rw-r--r-- 1 boinc boinc        28 Nov 25 17:32 wrapper_checkpoint.txt
[2025-11-25 17:32:53] -rw-r--r-- 1 boinc boinc      8192 Nov 25 17:32 boinc_mmap_file
[2025-11-25 17:32:53] -rw-r--r-- 1 boinc boinc     21073 Nov 25 17:32 stderr.txt
[2025-11-25 17:32:53] HITS file was successfully produced:
[2025-11-25 17:32:53] -rw------- 1 boinc boinc 915371121 Nov 25 17:27 shared/HITS.pool.root.1
[2025-11-25 17:32:53]  *** Contents of shared directory: ***
[2025-11-25 17:32:53] total 1303956
[2025-11-25 17:32:53] -rw-r--r-- 2 boinc boinc 409794560 Nov 25 01:48 ATLAS.root_0
[2025-11-25 17:32:53] -rw-r--r-- 2 boinc boinc     15847 Nov 25 01:48 start_atlas.sh
[2025-11-25 17:32:53] -rw-r--r-- 2 boinc boinc    590100 Nov 25 01:48 input.tar.gz
[2025-11-25 17:32:53] -rw------- 1 boinc boinc 915371121 Nov 25 17:27 HITS.pool.root.1
[2025-11-25 17:32:53] -rw------- 1 boinc boinc   9461760 Nov 25 17:29 result.tar.gz
17:32:54 (1151024): run_atlas exited; CPU time 226041.873104
17:32:54 (1151024): called boinc_finish(0)

</stderr_txt>
]]>

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