Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:36:13 (554584): wrapper (7.7.26015): starting
16:36:13 (554584): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 16:36:13] Arguments: --nthreads 12
[2025-11-20 16:36:13] Threads: 12
[2025-11-20 16:36:13] Checking for CVMFS
[2025-11-20 16:36:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 16:36:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 16:36:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 16:36:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 16:36:15] 2.11.5.0 2081521 20430 243360 153102 1 474 44028522 45568000 18754 130560 0 121574167 99.795 69786823 16966 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-20 16:36:15] CVMFS is ok
[2025-11-20 16:36:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 16:36:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 16:36:15] Further information can be found at the LHC@home message board.
[2025-11-20 16:36:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 16:36:15] Checking for apptainer binary...
[2025-11-20 16:36:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 16:36:15] Running /usr/bin/apptainer --version
[2025-11-20 16:36:16] apptainer version 1.4.1-1.el9
[2025-11-20 16:36:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 16:36:17] wns0041.triumf.lcg
[2025-11-20 16:36:17] apptainer works
[2025-11-20 16:36:17] Set ATHENA_PROC_NUMBER=12
[2025-11-20 16:36:17] Set ATHENA_CORE_NUMBER=12
[2025-11-20 16:36:18] Starting ATLAS job with PandaID=6893878601
[2025-11-20 16:36:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 16:48:17]  *** The last 200 lines of the pilot log: ***
[2025-11-20 16:48:17] 2025-11-21 00:47:07,321 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 16:48:17] 2025-11-21 00:47:07,322 | WARNING  | wrong length of table data, x=[1763685589.0, 1763685650.0, 1763685711.0, 1763685772.0, 1763685833.0], y=[1713.0, 338564.0, 531847.0, 368531.0, 518275.0] (must be s
[2025-11-20 16:48:17] 2025-11-21 00:47:07,323 | INFO     | could have reported an average CPU frequency of 1350 MHz (4 samples)
[2025-11-20 16:48:17] 2025-11-21 00:47:07,323 | INFO     | ..............................
[2025-11-20 16:48:17] 2025-11-21 00:47:07,324 | INFO     | . Timing measurements:
[2025-11-20 16:48:17] 2025-11-21 00:47:07,324 | INFO     | . get job = 0 s
[2025-11-20 16:48:17] 2025-11-21 00:47:07,324 | INFO     | . initial setup = 5 s
[2025-11-20 16:48:17] 2025-11-21 00:47:07,324 | INFO     | . payload setup = 49 s
[2025-11-20 16:48:17] 2025-11-21 00:47:07,324 | INFO     | . stage-in = 0 s
[2025-11-20 16:48:17] 2025-11-21 00:47:07,324 | INFO     | . payload execution = 320 s
[2025-11-20 16:48:17] 2025-11-21 00:47:07,324 | INFO     | . stage-out = 2 s
[2025-11-20 16:48:17] 2025-11-21 00:47:07,324 | INFO     | . log creation = 0 s
[2025-11-20 16:48:17] 2025-11-21 00:47:07,324 | INFO     | ..............................
[2025-11-20 16:48:17] 2025-11-21 00:47:07,325 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 16:48:17] 2025-11-21 00:47:07,325 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893878601/pilotlog.txt
[2025-11-20 16:48:17] 2025-11-21 00:47:07,364 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-20 16:48:17] - Log from pilotlog.txt -
[2025-11-20 16:48:17] 2025-11-21 00:47:07,317 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893878601/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 16:48:17] 2025-11-21 00:47:07,319 | INFO     | extracted standard info from prmon json
[2025-11-20 16:48:17] 2025-11-21 00:47:07,320 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 16:48:17] 2025-11-21 00:47:07,320 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 16:48:17] 2025-11-21 00:47:07,320 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 16:48:17] 2025-11-21 00:47:07,321 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 16:48:17] 2025-11-21 00:47:07,322 | WARNING  | wrong length of table data, x=[1763685589.0, 1763685650.0, 1763685711.0, 1763685772.0, 1763685833.0], y=[1713.0, 338564.0, 531847.0, 368531.0, 518275.0] (must be s
[2025-11-20 16:48:17] 2025-11-21 00:47:07,323 | INFO     | could have reported an average CPU frequency of 1350 MHz (4 samples)
[2025-11-20 16:48:17] 2025-11-21 00:47:07,323 | INFO     | ..............................
[2025-11-20 16:48:17] 2025-11-21 00:47:07,324 | INFO     | . Timing measurements:
[2025-11-20 16:48:17] 2025-11-21 00:47:07,324 | INFO     | . get job = 0 s
[2025-11-20 16:48:17] 2025-11-21 00:47:07,324 | INFO     | . initial setup = 5 s
[2025-11-20 16:48:17] 2025-11-21 00:47:07,324 | INFO     | . payload setup = 49 s
[2025-11-20 16:48:17] 2025-11-21 00:47:07,324 | INFO     | . stage-in = 0 s
[2025-11-20 16:48:17] 2025-11-21 00:47:07,324 | INFO     | . payload execution = 320 s
[2025-11-20 16:48:17] 2025-11-21 00:47:07,324 | INFO     | . stage-out = 2 s
[2025-11-20 16:48:17] 2025-11-21 00:47:07,324 | INFO     | . log creation = 0 s
[2025-11-20 16:48:17] 2025-11-21 00:47:07,324 | INFO     | ..............................
[2025-11-20 16:48:17] 2025-11-21 00:47:07,325 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 16:48:17] 2025-11-21 00:47:07,325 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893878601/pilotlog.txt
[2025-11-20 16:48:17] 2025-11-21 00:47:07,368 | WARNING  | 
[2025-11-20 16:48:17] [begin log extracts]
[2025-11-20 16:48:17] - Log from pilotlog.txt -
[2025-11-20 16:48:17] 2025-11-21 00:47:07,317 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893878601/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 16:48:17] 2025-11-21 00:47:07,319 | INFO     | extracted standard info from prmon json
[2025-11-20 16:48:17] 2025-11-21 00:47:07,320 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 16:48:17] 2025-11-21 00:47:07,320 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 16:48:17] 2025-11-21 00:47:07,320 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 16:48:17] 2025-11-21 00:47:07,321 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 16:48:17] 2025-11-21 00:47:07,322 | WARNING  | wrong length of table data, x=[1763685589.0, 1763685650.0, 1763685711.0, 1763685772.0, 1763685833.0], y=[1713.0, 338564.0, 531847.0, 368531.0, 518275.0] (must be s
[2025-11-20 16:48:17] 2025-11-21 00:47:07,323 | INFO     | could have reported an average CPU frequency of 1350 MHz (4 samples)
[2025-11-20 16:48:17] 2025-11-21 00:47:07,323 | INFO     | ..............................
[2025-11-20 16:48:17] 2025-11-21 00:47:07,324 | INFO     | . Timing measurements:
[2025-11-20 16:48:17] 2025-11-21 00:47:07,324 | INFO     | . get job = 0 s
[2025-11-20 16:48:17] 2025-11-21 00:47:07,324 | INFO     | . initial setup = 5 s
[2025-11-20 16:48:17] 2025-11-21 00:47:07,324 | INFO     | . payload setup = 49 s
[2025-11-20 16:48:17] 2025-11-21 00:47:07,324 | INFO     | . stage-in = 0 s
[2025-11-20 16:48:17] 2025-11-21 00:47:07,324 | INFO     | . payload execution = 320 s
[2025-11-20 16:48:17] 2025-11-21 00:47:07,324 | INFO     | . stage-out = 2 s
[2025-11-20 16:48:17] 2025-11-21 00:47:07,324 | INFO     | . log creation = 0 s
[2025-11-20 16:48:17] 2025-11-21 00:47:07,324 | INFO     | ..............................
[2025-11-20 16:48:17] 2025-11-21 00:47:07,325 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 16:48:17] 2025-11-21 00:47:07,325 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893878601/pilotlog.txt
[2025-11-20 16:48:17] [end log extracts]
[2025-11-20 16:48:17] 2025-11-21 00:47:07,369 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-20 16:48:17] 2025-11-21 00:47:07,370 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-20 16:48:17] 2025-11-21 00:47:08,045 | INFO     | 
[2025-11-20 16:48:17] 2025-11-21 00:47:08,045 | INFO     | job summary report
[2025-11-20 16:48:17] 2025-11-21 00:47:08,045 | INFO     | --------------------------------------------------
[2025-11-20 16:48:17] 2025-11-21 00:47:08,045 | INFO     | PanDA job id: 6893878601
[2025-11-20 16:48:17] 2025-11-21 00:47:08,046 | INFO     | task id: 47523449
[2025-11-20 16:48:17] 2025-11-21 00:47:08,046 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-20 16:44:27,437 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-20 16:48:17] 2025-11-21 00:47:08,046 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-20 16:48:17] 2025-11-21 00:47:08,046 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 16:48:17] 2025-11-21 00:47:08,046 | INFO     | pilot state: failed 
[2025-11-20 16:48:17] 2025-11-21 00:47:08,046 | INFO     | transexitcode: 65
[2025-11-20 16:48:17] 2025-11-21 00:47:08,046 | INFO     | exeerrorcode: 65
[2025-11-20 16:48:17] 2025-11-21 00:47:08,046 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-20 16:48:17] 2025-11-21 00:47:08,046 | INFO     | exitcode: 65
[2025-11-20 16:48:17] 2025-11-21 00:47:08,046 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-20 16:48:17] 2025-11-21 00:47:08,046 | INFO     | cpuconsumptiontime: 80 s
[2025-11-20 16:48:17] 2025-11-21 00:47:08,047 | INFO     | nevents: 0
[2025-11-20 16:48:17] 2025-11-21 00:47:08,047 | INFO     | neventsw: 0
[2025-11-20 16:48:17] 2025-11-21 00:47:08,047 | INFO     | pid: 577967
[2025-11-20 16:48:17] 2025-11-21 00:47:08,047 | INFO     | pgrp: 577967
[2025-11-20 16:48:17] 2025-11-21 00:47:08,047 | INFO     | corecount: 12
[2025-11-20 16:48:17] 2025-11-21 00:47:08,047 | INFO     | event service: False
[2025-11-20 16:48:17] 2025-11-21 00:47:08,047 | INFO     | sizes: {0: 2297928, 1: 2298610, 2: 2298638, 3: 2298837, 14: 2298837, 25: 2298865, 27: 2299283, 36: 2299311, 373: 2324819, 377: 2329165, 525: 2329303}
[2025-11-20 16:48:17] 2025-11-21 00:47:08,047 | INFO     | --------------------------------------------------
[2025-11-20 16:48:17] 2025-11-21 00:47:08,047 | INFO     | 
[2025-11-20 16:48:17] 2025-11-21 00:47:08,047 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-20 16:48:17] 2025-11-21 00:47:08,283 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 16:48:17] 2025-11-21 00:47:08,283 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 16:48:17] 2025-11-21 00:47:08,283 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 16:48:17] 2025-11-21 00:47:08,283 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 16:48:17] 2025-11-21 00:47:08,283 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 16:48:17] 2025-11-21 00:47:08,284 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 16:48:17] 2025-11-21 00:47:08,284 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 16:48:17] 2025-11-21 00:47:08,284 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 16:48:17] 2025-11-21 00:47:08,284 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 16:48:17] 2025-11-21 00:47:08,284 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 16:48:17] 2025-11-21 00:47:08,284 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 16:48:17] 2025-11-21 00:47:08,284 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 16:48:17] 2025-11-21 00:47:08,284 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 16:48:17] 2025-11-21 00:47:08,284 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 16:48:17] 2025-11-21 00:47:08,284 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 16:48:17] 2025-11-21 00:47:08,285 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 16:48:17] 2025-11-21 00:47:08,285 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 16:48:17] 2025-11-21 00:47:08,285 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 16:48:17] 2025-11-21 00:47:08,285 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 16:48:17] 2025-11-21 00:47:08,285 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 16:48:17] 2025-11-21 00:47:08,285 | INFO     | job 6893878601 has completed (purged errors)
[2025-11-20 16:48:17] 2025-11-21 00:47:08,285 | INFO     | overall cleanup function is called
[2025-11-20 16:48:17] 2025-11-21 00:47:09,345 | INFO     | --- collectZombieJob: --- 10, [577967]
[2025-11-20 16:48:17] 2025-11-21 00:47:09,345 | INFO     | zombie collector waiting for pid 577967
[2025-11-20 16:48:17] 2025-11-21 00:47:09,345 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 16:48:17] 2025-11-21 00:47:09,346 | INFO     | collected zombie processes
[2025-11-20 16:48:17] 2025-11-21 00:47:09,346 | INFO     | will attempt to kill all subprocesses of pid=577967
[2025-11-20 16:48:17] 2025-11-21 00:47:10,759 | INFO     | process IDs to be killed: [577967] (in reverse order)
[2025-11-20 16:48:17] 2025-11-21 00:47:11,453 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 16:48:17] 2025-11-21 00:47:11,453 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 16:48:17] 2025-11-21 00:47:11,494 | INFO     | did not find any defunct processes belonging to 577967
[2025-11-20 16:48:17] 2025-11-21 00:47:11,530 | INFO     | did not find any defunct processes belonging to 577967
[2025-11-20 16:48:17] 2025-11-21 00:47:11,531 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 16:48:17] 2025-11-21 00:47:11,532 | INFO     | ready for new job
[2025-11-20 16:48:17] 2025-11-21 00:47:11,532 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 16:48:17] 2025-11-21 00:47:11,538 | INFO     | ***************************************
[2025-11-20 16:48:17] 2025-11-21 00:47:11,538 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 16:48:17] 2025-11-21 00:47:11,538 | INFO     | ***************************************
[2025-11-20 16:48:17] 2025-11-21 00:47:11,539 | INFO     | 
[2025-11-20 16:48:17] 2025-11-21 00:47:11,547 | INFO     | architecture information:
[2025-11-20 16:48:17] 2025-11-21 00:47:11,547 | INFO     | executing command: cat /etc/os-release
[2025-11-20 16:48:17] 2025-11-21 00:47:11,592 | INFO     | cat /etc/os-release:
[2025-11-20 16:48:17] NAME="CentOS Linux"
[2025-11-20 16:48:17] VERSION="7 (Core)"
[2025-11-20 16:48:17] ID="centos"
[2025-11-20 16:48:17] ID_LIKE="rhel fedora"
[2025-11-20 16:48:17] VERSION_ID="7"
[2025-11-20 16:48:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 16:48:17] ANSI_COLOR="0;31"
[2025-11-20 16:48:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 16:48:17] HOME_URL="https://www.centos.org/"
[2025-11-20 16:48:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 16:48:17] 
[2025-11-20 16:48:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 16:48:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 16:48:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 16:48:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 16:48:17] 
[2025-11-20 16:48:17] 2025-11-21 00:47:11,593 | INFO     | ***************************************
[2025-11-20 16:48:17] 2025-11-21 00:47:12,095 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-20 16:48:17] 2025-11-21 00:47:12,179 | INFO     | sufficient remaining disk space (2044944449536 B)
[2025-11-20 16:48:17] 2025-11-21 00:47:12,180 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 16:48:17] 2025-11-21 00:47:12,180 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 16:48:17] 2025-11-21 00:47:12,180 | INFO     | update_server=False
[2025-11-20 16:48:17] 2025-11-21 00:47:12,180 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 16:48:17] 2025-11-21 00:47:12,244 | INFO     | all data control threads have been joined
[2025-11-20 16:48:17] 2025-11-21 00:47:12,913 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 16:48:17] 2025-11-21 00:47:12,913 | INFO     | aborting loop
[2025-11-20 16:48:17] 2025-11-21 00:47:12,963 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 16:48:17] 2025-11-21 00:47:13,186 | INFO     | [job] retrieve thread has finished
[2025-11-20 16:48:17] 2025-11-21 00:47:13,250 | INFO     | [data] control thread has finished
[2025-11-20 16:48:17] 2025-11-21 00:47:13,259 | INFO     | all job control threads have been joined
[2025-11-20 16:48:17] 2025-11-21 00:47:13,337 | INFO     | all payload control threads have been joined
[2025-11-20 16:48:17] 2025-11-21 00:47:13,679 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 16:48:17] 2025-11-21 00:47:13,740 | INFO     | [payload] failed_post thread has finished
[2025-11-20 16:48:17] 2025-11-21 00:47:13,825 | INFO     | [payload] validate_post thread has finished
[2025-11-20 16:48:17] 2025-11-21 00:47:13,919 | INFO     | [job] job monitor thread has finished
[2025-11-20 16:48:17] 2025-11-21 00:47:13,969 | INFO     | [job] queue monitor thread has finished
[2025-11-20 16:48:17] 2025-11-21 00:47:13,992 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 16:48:17] 2025-11-21 00:47:14,059 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 16:48:17] 2025-11-21 00:47:14,066 | INFO     | [job] validate thread has finished
[2025-11-20 16:48:17] 2025-11-21 00:47:14,067 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 16:48:17] 2025-11-21 00:47:14,266 | INFO     | [job] control thread has finished
[2025-11-20 16:48:17] 2025-11-21 00:47:14,343 | INFO     | [payload] control thread has finished
[2025-11-20 16:48:17] 2025-11-21 00:47:14,500 | INFO     | [data] copytool_in thread has finished
[2025-11-20 16:48:17] 2025-11-21 00:47:14,626 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 16:48:17] 2025-11-21 00:47:15,127 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 16:48:17] 2025-11-21 00:47:15,699 | INFO     | [data] copytool_out thread has finished
[2025-11-20 16:48:17] 2025-11-21 00:47:19,136 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 16:48:17] 2025-11-21 00:47:42,186 | INFO     | PID=560555 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-20 16:48:17] 2025-11-21 00:47:42,202 | INFO     | .. there are 35 such processes running
[2025-11-20 16:48:17] 2025-11-21 00:47:42,203 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 16:48:17] 2025-11-21 00:47:42,203 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 16:48:17] 2025-11-21 00:47:42,204 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 16:48:17] 2025-11-21 00:48:09,549 | INFO     | [monitor] cgroup control has ended
[2025-11-20 16:48:17] 2025-11-21 00:48:10,747 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140143669348160)>', '<ExcThread(monitor, started 140142744422144)>']
[2025-11-20 16:48:17] 2025-11-21 00:48:11,379 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 16:48:17] 2025-11-21 00:48:11,379 | INFO     | [monitor] control thread has ended
[2025-11-20 16:48:17] 2025-11-21 00:48:15,773 | INFO     | all workflow threads have been joined
[2025-11-20 16:48:17] 2025-11-21 00:48:15,773 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 16:48:17] 2025-11-21 00:48:15,774 | INFO     | traces error code: 0
[2025-11-20 16:48:17] 2025-11-21 00:48:15,774 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 16:48:17] 2025-11-21 00:48:16,220 [wrapper] ==== pilot stdout END ====
[2025-11-20 16:48:17] 2025-11-21 00:48:16,254 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 16:48:17] 2025-11-21 00:48:16,278 [wrapper] pilotpid: 560555
[2025-11-20 16:48:17] 2025-11-21 00:48:16,299 [wrapper] Pilot exit status: 0
[2025-11-20 16:48:17] 2025-11-21 00:48:16,421 [wrapper] pandaids: 6893878601
[2025-11-20 16:48:17] 2025-11-21 00:48:16,662 [wrapper] cleanup supervisor_pilot  560562 560556
[2025-11-20 16:48:17] 2025-11-21 00:48:16,687 [wrapper] Test setup, not cleaning
[2025-11-20 16:48:17] 2025-11-21 00:48:16,701 [wrapper] apfmon messages muted
[2025-11-20 16:48:17] 2025-11-21 00:48:16,717 [wrapper] ==== wrapper stdout END ====
[2025-11-20 16:48:17] 2025-11-21 00:48:16,800 [wrapper] ==== wrapper stderr END ====
[2025-11-20 16:48:17]  *** Error codes and diagnostics ***
[2025-11-20 16:48:17]     "exeErrorCode": 65,
[2025-11-20 16:48:17]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-20 16:48:17]     "pilotErrorCode": 1305,
[2025-11-20 16:48:17]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-20 16:48:17]  *** Listing of results directory ***
[2025-11-20 16:48:17] total 403376
[2025-11-20 16:48:17] -rw-r--r--. 1 boinc boinc    576529 Nov 20 10:04 pilot3.tar.gz
[2025-11-20 16:48:17] -rw-r--r--. 1 boinc boinc      5112 Nov 20 10:47 queuedata.json
[2025-11-20 16:48:17] -rwx------. 1 boinc boinc     36292 Nov 20 10:48 runpilot2-wrapper.sh
[2025-11-20 16:48:17] -rw-r--r--. 1 boinc boinc       100 Nov 20 16:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 16:48:17] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 16:36 run_atlas
[2025-11-20 16:48:17] -rw-r--r--. 1 boinc boinc       105 Nov 20 16:36 job.xml
[2025-11-20 16:48:17] -rw-r--r--. 1 boinc boinc      6595 Nov 20 16:36 init_data.xml
[2025-11-20 16:48:17] -rw-r--r--. 2 boinc boinc 408755790 Nov 20 16:36 EVNT.47493127._000806.pool.root.1
[2025-11-20 16:48:17] -rw-r--r--. 2 boinc boinc     15847 Nov 20 16:36 start_atlas.sh
[2025-11-20 16:48:17] drwxrwx--x. 2 boinc boinc      4096 Nov 20 16:36 shared
[2025-11-20 16:48:17] -rw-r--r--. 2 boinc boinc    590102 Nov 20 16:36 input.tar.gz
[2025-11-20 16:48:17] -rw-r--r--. 1 boinc boinc         0 Nov 20 16:36 boinc_lockfile
[2025-11-20 16:48:17] -rw-r--r--. 1 boinc boinc      2785 Nov 20 16:36 pandaJob.out
[2025-11-20 16:48:17] -rw-------. 1 boinc boinc    989817 Nov 20 16:37 agis_schedconf.cvmfs.json
[2025-11-20 16:48:17] -rw-------. 1 boinc boinc   1526164 Nov 20 16:37 agis_ddmendpoints.agis.ALL.json
[2025-11-20 16:48:17] drwx------. 5 boinc boinc      4096 Nov 20 16:37 pilot3
[2025-11-20 16:48:17] -rw-r--r--. 1 boinc boinc       525 Nov 20 16:44 boinc_task_state.xml
[2025-11-20 16:48:17] -rw-------. 1 boinc boinc       999 Nov 20 16:44 memory_monitor_summary.json
[2025-11-20 16:48:17] -rw-------. 1 boinc boinc     52705 Nov 20 16:44 log.47523449._008054.job.log.tgz.1
[2025-11-20 16:48:17] -rw-------. 1 boinc boinc     10339 Nov 20 16:47 heartbeat.json
[2025-11-20 16:48:17] -rw-------. 1 boinc boinc        95 Nov 20 16:47 pilot_heartbeat.json
[2025-11-20 16:48:17] -rw-------. 1 boinc boinc      4822 Nov 20 16:48 pilotlog.txt
[2025-11-20 16:48:17] -rw-------. 1 boinc boinc    136142 Nov 20 16:48 log.47523449._008054.job.log.1
[2025-11-20 16:48:17] -rw-r--r--. 1 boinc boinc      8192 Nov 20 16:48 boinc_mmap_file
[2025-11-20 16:48:17] -rw-------. 1 boinc boinc       186 Nov 20 16:48 output.list
[2025-11-20 16:48:17] -rw-r--r--. 1 boinc boinc       620 Nov 20 16:48 runtime_log
[2025-11-20 16:48:17] -rw-------. 1 boinc boinc    215040 Nov 20 16:48 result.tar.gz
[2025-11-20 16:48:17] -rw-r--r--. 1 boinc boinc        23 Nov 20 16:48 wrapper_checkpoint.txt
[2025-11-20 16:48:17] -rw-r--r--. 1 boinc boinc      8636 Nov 20 16:48 runtime_log.err
[2025-11-20 16:48:17] -rw-------. 1 boinc boinc       645 Nov 20 16:48 n1dKDm4sOg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmLyGKDmbZEikm.diag
[2025-11-20 16:48:17] -rw-r--r--. 1 boinc boinc     22673 Nov 20 16:48 stderr.txt
[2025-11-20 16:48:17] No HITS result produced
[2025-11-20 16:48:17]  *** Contents of shared directory: ***
[2025-11-20 16:48:17] total 399988
[2025-11-20 16:48:17] -rw-r--r--. 2 boinc boinc 408755790 Nov 20 16:36 ATLAS.root_0
[2025-11-20 16:48:17] -rw-r--r--. 2 boinc boinc     15847 Nov 20 16:36 start_atlas.sh
[2025-11-20 16:48:17] -rw-r--r--. 2 boinc boinc    590102 Nov 20 16:36 input.tar.gz
[2025-11-20 16:48:17] -rw-------. 1 boinc boinc    215040 Nov 20 16:48 result.tar.gz
16:48:19 (554584): run_atlas exited; CPU time 92.620283
16:48:19 (554584): called boinc_finish(0)

</stderr_txt>
]]>

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