Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:33:53 (3650192): wrapper (7.7.26015): starting
09:33:53 (3650192): wrapper: running run_atlas (--nthreads 4)
[2025-11-26 09:33:53] Arguments: --nthreads 4
[2025-11-26 09:33:53] Threads: 4
[2025-11-26 09:33:53] Checking for CVMFS
[2025-11-26 09:33:53] No cvmfs_config command found, will try listing directly
[2025-11-26 09:33:53] CVMFS is ok
[2025-11-26 09:33:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 09:33:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 09:33:53] Further information can be found at the LHC@home message board.
[2025-11-26 09:33:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 09:33:53] Checking for apptainer binary...
[2025-11-26 09:33:53] which: no apptainer in ((null))
[2025-11-26 09:33:53] apptainer is not installed, using version from CVMFS
[2025-11-26 09:33:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 09:33:53] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-11-26 09:33:53] apptainer works
[2025-11-26 09:33:53] Set ATHENA_PROC_NUMBER=4
[2025-11-26 09:33:53] Set ATHENA_CORE_NUMBER=4
[2025-11-26 09:33:53] Starting ATLAS job with PandaID=6893852141
[2025-11-26 09:33:53] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 01:18:45]  *** The last 200 lines of the pilot log: ***
[2025-11-27 01:18:45] 2025-11-27 00:16:00,301 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2715.2193906249995
[2025-11-27 01:18:45] 2025-11-27 00:16:00,326 | INFO     | using path: /scratch/boinc/var/slot116/slots/0/PanDA_Pilot-6893852141/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 01:18:45] 2025-11-27 00:16:00,327 | INFO     | extracted standard info from prmon json
[2025-11-27 01:18:45] 2025-11-27 00:16:00,327 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 01:18:45] 2025-11-27 00:16:00,327 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 01:18:45] 2025-11-27 00:16:00,342 | INFO     | fitting pss+swap vs Time
[2025-11-27 01:18:45] 2025-11-27 00:16:00,344 | INFO     | sum of square deviations: 246212941987.5
[2025-11-27 01:18:45] 2025-11-27 00:16:00,364 | INFO     | sum of deviations: 794762573039.9999
[2025-11-27 01:18:45] 2025-11-27 00:16:00,364 | INFO     | mean x: 1764174294.5
[2025-11-27 01:18:45] 2025-11-27 00:16:00,364 | INFO     | mean y: 2277669.7969762417
[2025-11-27 01:18:45] 2025-11-27 00:16:00,365 | INFO     | intersect: -5692385211.324155
[2025-11-27 01:18:45] 2025-11-27 00:16:00,366 | INFO     | chi2: 3.707970463957282
[2025-11-27 01:18:45] 2025-11-27 00:16:00,367 | INFO     | sum of square deviations: 242246104820.0
[2025-11-27 01:18:45] 2025-11-27 00:16:00,389 | INFO     | sum of deviations: 957260808173.9999
[2025-11-27 01:18:45] 2025-11-27 00:16:00,389 | INFO     | mean x: 1764174142.0
[2025-11-27 01:18:45] 2025-11-27 00:16:00,390 | INFO     | mean y: 2283909.84907709
[2025-11-27 01:18:45] 2025-11-27 00:16:00,390 | INFO     | intersect: -6969034643.179588
[2025-11-27 01:18:45] 2025-11-27 00:16:00,391 | INFO     | chi2: 2.0373618022246145
[2025-11-27 01:18:45] 2025-11-27 00:16:00,391 | INFO     | current chi2=2.0373618022246145 (change=45.05452990986699 %)
[2025-11-27 01:18:45] 2025-11-27 00:16:00,392 | INFO     | sum of square deviations: 238322105665.0
[2025-11-27 01:18:45] 2025-11-27 00:16:00,413 | INFO     | sum of deviations: 945889219863.5004
[2025-11-27 01:18:45] 2025-11-27 00:16:00,413 | INFO     | mean x: 1764173989.5
[2025-11-27 01:18:45] 2025-11-27 00:16:00,413 | INFO     | mean y: 2283466.8526200876
[2025-11-27 01:18:45] 2025-11-27 00:16:00,413 | INFO     | intersect: -6999640060.028593
[2025-11-27 01:18:45] 2025-11-27 00:16:00,414 | INFO     | chi2: 2.030373352932
[2025-11-27 01:18:45] 2025-11-27 00:16:00,414 | INFO     | current chi2=2.030373352932 (change=0.34301464202301657 %)
[2025-11-27 01:18:45] 2025-11-27 00:16:00,414 | INFO     | right removable region: 915
[2025-11-27 01:18:45] 2025-11-27 00:16:00,415 | INFO     | sum of square deviations: 242246104820.0
[2025-11-27 01:18:45] 2025-11-27 00:16:00,437 | INFO     | sum of deviations: 619218328234.9999
[2025-11-27 01:18:45] 2025-11-27 00:16:00,437 | INFO     | mean x: 1764174447.0
[2025-11-27 01:18:45] 2025-11-27 00:16:00,437 | INFO     | mean y: 2284406.5342019545
[2025-11-27 01:18:45] 2025-11-27 00:16:00,437 | INFO     | intersect: -4507217005.667888
[2025-11-27 01:18:45] 2025-11-27 00:16:00,438 | INFO     | chi2: 1.7704686269744279
[2025-11-27 01:18:45] 2025-11-27 00:16:00,438 | INFO     | current chi2=1.7704686269744279 (change=52.25235356689117 %)
[2025-11-27 01:18:45] 2025-11-27 00:16:00,439 | INFO     | sum of square deviations: 238322105665.0
[2025-11-27 01:18:45] 2025-11-27 00:16:00,459 | INFO     | sum of deviations: 589109623257.5002
[2025-11-27 01:18:45] 2025-11-27 00:16:00,459 | INFO     | mean x: 1764174599.5
[2025-11-27 01:18:45] 2025-11-27 00:16:00,460 | INFO     | mean y: 2285575.961790393
[2025-11-27 01:18:45] 2025-11-27 00:16:00,460 | INFO     | intersect: -4358586575.498589
[2025-11-27 01:18:45] 2025-11-27 00:16:00,461 | INFO     | chi2: 1.7497859485851492
[2025-11-27 01:18:45] 2025-11-27 00:16:00,461 | INFO     | current chi2=1.7497859485851492 (change=1.168203608590538 %)
[2025-11-27 01:18:45] 2025-11-27 00:16:00,461 | INFO     | left removable region: 20
[2025-11-27 01:18:45] 2025-11-27 00:16:00,462 | INFO     | sum of square deviations: 222303851840.0
[2025-11-27 01:18:45] 2025-11-27 00:16:00,482 | INFO     | sum of deviations: 697099406869.0
[2025-11-27 01:18:45] 2025-11-27 00:16:00,482 | INFO     | mean x: 1764174569.0
[2025-11-27 01:18:45] 2025-11-27 00:16:00,482 | INFO     | mean y: 2293051.031284916
[2025-11-27 01:18:45] 2025-11-27 00:16:00,482 | INFO     | intersect: -5529797533.4737835
[2025-11-27 01:18:45] 2025-11-27 00:16:00,483 | INFO     | chi2: 0.05604672944022103
[2025-11-27 01:18:45] 2025-11-27 00:16:00,484 | INFO     | current memory leak: 3.14 B/s (using 895 data points, chi2=0.06)
[2025-11-27 01:18:45] 2025-11-27 00:16:00,485 | INFO     | could have reported an average CPU frequency of 2680 MHz (35 samples)
[2025-11-27 01:18:45] 2025-11-27 00:16:00,485 | INFO     | ..............................
[2025-11-27 01:18:45] 2025-11-27 00:16:00,485 | INFO     | . Timing measurements:
[2025-11-27 01:18:45] 2025-11-27 00:16:00,485 | INFO     | . get job = 0 s
[2025-11-27 01:18:45] 2025-11-27 00:16:00,485 | INFO     | . initial setup = 1 s
[2025-11-27 01:18:45] 2025-11-27 00:16:00,485 | INFO     | . payload setup = 9 s
[2025-11-27 01:18:45] 2025-11-27 00:16:00,485 | INFO     | . stage-in = 0 s
[2025-11-27 01:18:45] 2025-11-27 00:16:00,485 | INFO     | . payload execution = 56470 s
[2025-11-27 01:18:45] 2025-11-27 00:16:00,485 | INFO     | . stage-out = 2 s
[2025-11-27 01:18:45] 2025-11-27 00:16:00,485 | INFO     | . log creation = 0 s
[2025-11-27 01:18:45] 2025-11-27 00:16:00,486 | INFO     | ..............................
[2025-11-27 01:18:45] 2025-11-27 00:16:00,582 | INFO     | 
[2025-11-27 01:18:45] 2025-11-27 00:16:00,582 | INFO     | job summary report
[2025-11-27 01:18:45] 2025-11-27 00:16:00,582 | INFO     | --------------------------------------------------
[2025-11-27 01:18:45] 2025-11-27 00:16:00,583 | INFO     | PanDA job id: 6893852141
[2025-11-27 01:18:45] 2025-11-27 00:16:00,583 | INFO     | task id: 47523449
[2025-11-27 01:18:45] 2025-11-27 00:16:00,583 | INFO     | errors: (none)
[2025-11-27 01:18:45] 2025-11-27 00:16:00,583 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 01:18:45] 2025-11-27 00:16:00,583 | INFO     | pilot state: finished 
[2025-11-27 01:18:45] 2025-11-27 00:16:00,583 | INFO     | transexitcode: 0
[2025-11-27 01:18:45] 2025-11-27 00:16:00,583 | INFO     | exeerrorcode: 0
[2025-11-27 01:18:45] 2025-11-27 00:16:00,583 | INFO     | exeerrordiag: 
[2025-11-27 01:18:45] 2025-11-27 00:16:00,583 | INFO     | exitcode: 0
[2025-11-27 01:18:45] 2025-11-27 00:16:00,583 | INFO     | exitmsg: OK
[2025-11-27 01:18:45] 2025-11-27 00:16:00,583 | INFO     | cpuconsumptiontime: 223962 s
[2025-11-27 01:18:45] 2025-11-27 00:16:00,584 | INFO     | nevents: 1000
[2025-11-27 01:18:45] 2025-11-27 00:16:00,584 | INFO     | neventsw: 0
[2025-11-27 01:18:45] 2025-11-27 00:16:00,584 | INFO     | pid: 3661557
[2025-11-27 01:18:45] 2025-11-27 00:16:00,584 | INFO     | pgrp: 3661557
[2025-11-27 01:18:45] 2025-11-27 00:16:00,584 | INFO     | corecount: 4
[2025-11-27 01:18:45] 2025-11-27 00:16:00,584 | INFO     | event service: False
[2025-11-27 01:18:45] 2025-11-27 00:16:00,584 | INFO     | sizes: {0: 2284326, 7: 2284588, 11: 2284616, 56484: 2337796, 56487: 2346870, 56495: 2347060}
[2025-11-27 01:18:45] 2025-11-27 00:16:00,584 | INFO     | --------------------------------------------------
[2025-11-27 01:18:45] 2025-11-27 00:16:00,584 | INFO     | 
[2025-11-27 01:18:45] 2025-11-27 00:16:00,584 | INFO     | executing command: ls -lF /scratch/boinc/var/slot116/slots/0
[2025-11-27 01:18:45] 2025-11-27 00:16:00,615 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 01:18:45] 2025-11-27 00:16:00,615 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 01:18:45] 2025-11-27 00:16:00,615 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 01:18:45] 2025-11-27 00:16:00,615 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 01:18:45] 2025-11-27 00:16:00,615 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 01:18:45] 2025-11-27 00:16:00,615 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 01:18:45] 2025-11-27 00:16:00,615 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 01:18:45] 2025-11-27 00:16:00,616 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 01:18:45] 2025-11-27 00:16:00,616 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 01:18:45] 2025-11-27 00:16:00,616 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 01:18:45] 2025-11-27 00:16:00,616 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 01:18:45] 2025-11-27 00:16:00,616 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 01:18:45] 2025-11-27 00:16:00,616 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 01:18:45] 2025-11-27 00:16:00,616 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 01:18:45] 2025-11-27 00:16:00,616 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 01:18:45] 2025-11-27 00:16:00,616 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 01:18:45] 2025-11-27 00:16:00,616 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 01:18:45] 2025-11-27 00:16:00,616 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 01:18:45] 2025-11-27 00:16:00,616 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 01:18:45] 2025-11-27 00:16:00,616 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 01:18:45] 2025-11-27 00:16:00,617 | INFO     | job 6893852141 has completed (purged errors)
[2025-11-27 01:18:45] 2025-11-27 00:16:00,617 | INFO     | overall cleanup function is called
[2025-11-27 01:18:45] 2025-11-27 00:16:01,632 | INFO     | --- collectZombieJob: --- 10, [3661557]
[2025-11-27 01:18:45] 2025-11-27 00:16:01,633 | INFO     | zombie collector waiting for pid 3661557
[2025-11-27 01:18:45] 2025-11-27 00:16:01,633 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 01:18:45] 2025-11-27 00:16:01,633 | INFO     | collected zombie processes
[2025-11-27 01:18:45] 2025-11-27 00:16:01,633 | INFO     | will attempt to kill all subprocesses of pid=3661557
[2025-11-27 01:18:45] 2025-11-27 00:16:02,881 | INFO     | PID=3654225 has CPU usage=25.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 01:18:45] 2025-11-27 00:16:02,881 | INFO     | .. there are 5 such processes running
[2025-11-27 01:18:45] 2025-11-27 00:16:03,144 | INFO     | process IDs to be killed: [3661557] (in reverse order)
[2025-11-27 01:18:45] 2025-11-27 00:16:03,378 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 01:18:45] 2025-11-27 00:16:03,379 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 01:18:45] 2025-11-27 00:16:03,409 | INFO     | did not find any defunct processes belonging to 3661557
[2025-11-27 01:18:45] 2025-11-27 00:16:03,438 | INFO     | did not find any defunct processes belonging to 3661557
[2025-11-27 01:18:45] 2025-11-27 00:16:03,440 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 01:18:45] 2025-11-27 00:16:03,440 | INFO     | ready for new job
[2025-11-27 01:18:45] 2025-11-27 00:16:03,441 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 01:18:45] 2025-11-27 00:16:03,447 | INFO     | ***************************************
[2025-11-27 01:18:45] 2025-11-27 00:16:03,447 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 01:18:45] 2025-11-27 00:16:03,447 | INFO     | ***************************************
[2025-11-27 01:18:45] 2025-11-27 00:16:03,447 | INFO     | 
[2025-11-27 01:18:45] 2025-11-27 00:16:03,456 | INFO     | architecture information:
[2025-11-27 01:18:45] 2025-11-27 00:16:03,457 | INFO     | executing command: cat /etc/os-release
[2025-11-27 01:18:45] 2025-11-27 00:16:03,482 | INFO     | cat /etc/os-release:
[2025-11-27 01:18:45] NAME="CentOS Linux"
[2025-11-27 01:18:45] VERSION="7 (Core)"
[2025-11-27 01:18:45] ID="centos"
[2025-11-27 01:18:45] ID_LIKE="rhel fedora"
[2025-11-27 01:18:45] VERSION_ID="7"
[2025-11-27 01:18:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 01:18:45] ANSI_COLOR="0;31"
[2025-11-27 01:18:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 01:18:45] HOME_URL="https://www.centos.org/"
[2025-11-27 01:18:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 01:18:45] 
[2025-11-27 01:18:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 01:18:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 01:18:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 01:18:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 01:18:45] 
[2025-11-27 01:18:45] 2025-11-27 00:16:03,482 | INFO     | ***************************************
[2025-11-27 01:18:45] 2025-11-27 00:16:03,985 | INFO     | executing command: df -mP /scratch/boinc/var/slot116/slots/0
[2025-11-27 01:18:45] 2025-11-27 00:16:04,010 | INFO     | sufficient remaining disk space (3275117035520 B)
[2025-11-27 01:18:45] 2025-11-27 00:16:04,011 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 01:18:45] 2025-11-27 00:16:04,011 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 01:18:45] 2025-11-27 00:16:04,011 | INFO     | update_server=False
[2025-11-27 01:18:45] 2025-11-27 00:16:04,011 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 01:18:45] 2025-11-27 00:16:04,156 | INFO     | all payload control threads have been joined
[2025-11-27 01:18:45] 2025-11-27 00:16:04,278 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 01:18:45] 2025-11-27 00:16:04,278 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 01:18:45] 2025-11-27 00:16:04,278 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:18:45] 2025-11-27 00:16:04,278 | INFO     | will abort loop
[2025-11-27 01:18:45] 2025-11-27 00:16:04,614 | INFO     | all data control threads have been joined
[2025-11-27 01:18:45] 2025-11-27 00:16:05,017 | INFO     | [job] retrieve thread has finished
[2025-11-27 01:18:45] 2025-11-27 00:16:05,058 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 01:18:45] 2025-11-27 00:16:05,160 | INFO     | all job control threads have been joined
[2025-11-27 01:18:45] 2025-11-27 00:16:05,161 | INFO     | [payload] control thread has finished
[2025-11-27 01:18:45] 2025-11-27 00:16:05,283 | INFO     | [job] validate thread has finished
[2025-11-27 01:18:45] 2025-11-27 00:16:05,283 | INFO     | [job] job monitor thread has finished
[2025-11-27 01:18:45] 2025-11-27 00:16:05,313 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 01:18:45] 2025-11-27 00:16:05,355 | INFO     | [data] copytool_in thread has finished
[2025-11-27 01:18:45] 2025-11-27 00:16:05,367 | INFO     | [payload] validate_post thread has finished
[2025-11-27 01:18:45] 2025-11-27 00:16:05,422 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 01:18:45] 2025-11-27 00:16:05,593 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:18:45] 2025-11-27 00:16:05,616 | INFO     | [data] control thread has finished
[2025-11-27 01:18:45] 2025-11-27 00:16:05,619 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 01:18:45] 2025-11-27 00:16:05,779 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 01:18:45] 2025-11-27 00:16:06,165 | INFO     | [job] control thread has finished
[2025-11-27 01:18:45] 2025-11-27 00:16:06,525 | INFO     | [payload] failed_post thread has finished
[2025-11-27 01:18:45] 2025-11-27 00:16:06,594 | INFO     | [job] queue monitor thread has finished
[2025-11-27 01:18:45] 2025-11-27 00:16:07,428 | INFO     | [data] copytool_out thread has finished
[2025-11-27 01:18:45] 2025-11-27 00:16:07,508 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 01:18:45] 2025-11-27 00:16:11,514 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 01:18:45] 2025-11-27 00:16:35,834 | INFO     | PID=3654225 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 01:18:45] 2025-11-27 00:16:35,836 | INFO     | .. there are 5 such processes running
[2025-11-27 01:18:45] 2025-11-27 00:16:35,837 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 01:18:45] 2025-11-27 00:16:35,837 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 01:18:45] 2025-11-27 00:16:35,837 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 01:18:45] 2025-11-27 00:16:39,088 | INFO     | [monitor] cgroup control has ended
[2025-11-27 01:18:45] 2025-11-27 00:16:39,607 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22581162436416)>', '<ExcThread(monitor, started 22580585027328)>']
[2025-11-27 01:18:45] 2025-11-27 00:16:39,854 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 01:18:45] 2025-11-27 00:16:39,855 | INFO     | [monitor] control thread has ended
[2025-11-27 01:18:45] 2025-11-27 00:16:44,632 | INFO     | all workflow threads have been joined
[2025-11-27 01:18:45] 2025-11-27 00:16:44,632 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 01:18:45] 2025-11-27 00:16:44,632 | INFO     | traces error code: 0
[2025-11-27 01:18:45] 2025-11-27 00:16:44,632 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 01:18:45] 2025-11-27 00:16:44,837 [wrapper] ==== pilot stdout END ====
[2025-11-27 01:18:45] 2025-11-27 00:16:44,842 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 01:18:45] 2025-11-27 00:16:44,847 [wrapper] pilotpid: 3654225
[2025-11-27 01:18:45] 2025-11-27 00:16:44,853 [wrapper] Pilot exit status: 0
[2025-11-27 01:18:45] 2025-11-27 00:16:44,868 [wrapper] pandaids: 6893852141
[2025-11-27 01:18:45] 2025-11-27 00:16:45,044 [wrapper] cleanup supervisor_pilot  676517 3654226
[2025-11-27 01:18:45] 2025-11-27 00:16:45,048 [wrapper] Test setup, not cleaning
[2025-11-27 01:18:45] 2025-11-27 00:16:45,052 [wrapper] apfmon messages muted
[2025-11-27 01:18:45] 2025-11-27 00:16:45,056 [wrapper] ==== wrapper stdout END ====
[2025-11-27 01:18:45] 2025-11-27 00:16:45,060 [wrapper] ==== wrapper stderr END ====
[2025-11-27 01:18:45]  *** Error codes and diagnostics ***
[2025-11-27 01:18:45]     "exeErrorCode": 0,
[2025-11-27 01:18:45]     "exeErrorDiag": "",
[2025-11-27 01:18:45]     "pilotErrorCode": 0,
[2025-11-27 01:18:45]     "pilotErrorDiag": "",
[2025-11-27 01:18:45]  *** Listing of results directory ***
[2025-11-27 01:18:45] total 1329400
[2025-11-27 01:18:45] -rw-r--r-- 1 boinc boinc    576529 Nov 20 12:09 pilot3.tar.gz
[2025-11-27 01:18:45] -rwx------ 1 boinc boinc     36292 Nov 20 12:48 runpilot2-wrapper.sh
[2025-11-27 01:18:45] -rw-r--r-- 1 boinc boinc      5112 Nov 20 12:48 queuedata.json
[2025-11-27 01:18:45] -rw-r--r-- 1 boinc boinc       100 Nov 26 08:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 01:18:45] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 08:33 run_atlas
[2025-11-27 01:18:45] -rw-r--r-- 1 boinc boinc       105 Nov 26 08:33 job.xml
[2025-11-27 01:18:45] -rw-r--r-- 2 boinc boinc 408009751 Nov 26 09:33 EVNT.47493127._000365.pool.root.1
[2025-11-27 01:18:45] -rw-r--r-- 1 boinc boinc      6687 Nov 26 09:33 init_data.xml
[2025-11-27 01:18:45] -rw-r--r-- 2 boinc boinc     15847 Nov 26 09:33 start_atlas.sh
[2025-11-27 01:18:45] drwxrwx--x 2 boinc boinc      4096 Nov 26 09:33 shared
[2025-11-27 01:18:45] -rw-r--r-- 2 boinc boinc    590102 Nov 26 09:33 input.tar.gz
[2025-11-27 01:18:45] -rw-r--r-- 1 boinc boinc         0 Nov 26 09:33 boinc_lockfile
[2025-11-27 01:18:45] -rw-r--r-- 1 boinc boinc      2785 Nov 26 09:33 pandaJob.out
[2025-11-27 01:18:45] -rw------- 1 boinc boinc    991877 Nov 26 09:34 agis_schedconf.cvmfs.json
[2025-11-27 01:18:45] drwx------ 5 boinc boinc      4096 Nov 26 09:34 pilot3
[2025-11-27 01:18:45] -rw-r--r-- 1 boinc boinc       532 Nov 27 01:09 boinc_task_state.xml
[2025-11-27 01:18:45] -rw------- 1 boinc boinc 930450256 Nov 27 01:15 HITS.47523449._003648.pool.root.1
[2025-11-27 01:18:45] -rw------- 1 boinc boinc      1041 Nov 27 01:15 memory_monitor_summary.json
[2025-11-27 01:18:45] -rw------- 1 boinc boinc   1516240 Nov 27 01:15 agis_ddmendpoints.agis.ALL.json
[2025-11-27 01:18:45] -rw------- 1 boinc boinc   1664625 Nov 27 01:15 log.47523449._003648.job.log.tgz.1
[2025-11-27 01:18:45] -rw------- 1 boinc boinc      8606 Nov 27 01:16 heartbeat.json
[2025-11-27 01:18:45] -rw------- 1 boinc boinc        95 Nov 27 01:16 pilot_heartbeat.json
[2025-11-27 01:18:45] -rw------- 1 boinc boinc      5021 Nov 27 01:16 pilotlog.txt
[2025-11-27 01:18:45] -rw------- 1 boinc boinc   7800015 Nov 27 01:16 log.47523449._003648.job.log.1
[2025-11-27 01:18:45] -rw------- 1 boinc boinc       353 Nov 27 01:16 output.list
[2025-11-27 01:18:45] -rw-r--r-- 1 boinc boinc       620 Nov 27 01:16 runtime_log
[2025-11-27 01:18:45] -rw------- 1 boinc boinc   9482240 Nov 27 01:16 result.tar.gz
[2025-11-27 01:18:45] -rw-r--r-- 1 boinc boinc      9223 Nov 27 01:16 runtime_log.err
[2025-11-27 01:18:45] -rw------- 1 boinc boinc       670 Nov 27 01:16 BVbLDmRKIg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmTZGKDm8QBMln.diag
[2025-11-27 01:18:45] -rw-r--r-- 1 boinc boinc        28 Nov 27 01:18 wrapper_checkpoint.txt
[2025-11-27 01:18:45] -rw-r--r-- 1 boinc boinc      8192 Nov 27 01:18 boinc_mmap_file
[2025-11-27 01:18:45] -rw-r--r-- 1 boinc boinc     21111 Nov 27 01:18 stderr.txt
[2025-11-27 01:18:45] HITS file was successfully produced:
[2025-11-27 01:18:45] -rw------- 1 boinc boinc 930450256 Nov 27 01:15 shared/HITS.pool.root.1
[2025-11-27 01:18:45]  *** Contents of shared directory: ***
[2025-11-27 01:18:45] total 1316956
[2025-11-27 01:18:45] -rw-r--r-- 2 boinc boinc 408009751 Nov 26 09:33 ATLAS.root_0
[2025-11-27 01:18:45] -rw-r--r-- 2 boinc boinc     15847 Nov 26 09:33 start_atlas.sh
[2025-11-27 01:18:45] -rw-r--r-- 2 boinc boinc    590102 Nov 26 09:33 input.tar.gz
[2025-11-27 01:18:45] -rw------- 1 boinc boinc 930450256 Nov 27 01:15 HITS.pool.root.1
[2025-11-27 01:18:45] -rw------- 1 boinc boinc   9482240 Nov 27 01:16 result.tar.gz
01:18:47 (3650192): run_atlas exited; CPU time 226914.905218
01:18:47 (3650192): called boinc_finish(0)

</stderr_txt>
]]>

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