Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-20 19:38:01 (17476): vboxwrapper version 26210
2025-11-20 19:38:01 (17476): BOINC client version: 8.2.6
2025-11-20 19:38:01 (17476): Detected: VirtualBox VboxManage Interface (Version: 7.2.4)
2025-11-20 19:38:01 (17476): Successfully copied 'init_data.xml' to the shared directory.
2025-11-20 19:38:02 (17476): Create VM. (boinc_d791d04febba2c0f, slot#16)
2025-11-20 19:38:02 (17476): Setting Memory Size for VM. (4300MB)
2025-11-20 19:38:03 (17476): Setting CPU Count for VM. (3)
2025-11-20 19:38:03 (17476): Setting Chipset Options for VM.
2025-11-20 19:38:03 (17476): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-20 19:38:03 (17476): Setting Boot Options for VM.
2025-11-20 19:38:04 (17476): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-20 19:38:04 (17476): Enabling VM Network Access.
2025-11-20 19:38:04 (17476): Disabling USB Support for VM.
2025-11-20 19:38:05 (17476): Disabling COM Port Support for VM.
2025-11-20 19:38:05 (17476): Disabling LPT Port Support for VM.
2025-11-20 19:38:05 (17476): Disabling Audio Support for VM.
2025-11-20 19:38:05 (17476): Disabling Clipboard Support for VM.
2025-11-20 19:38:06 (17476): Disabling Drag and Drop Support for VM.
2025-11-20 19:38:06 (17476): Adding storage controller(s) to VM.
2025-11-20 19:38:06 (17476): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-20 19:38:08 (17476): Adding VirtualBox Guest Additions to VM.
2025-11-20 19:38:09 (17476): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-20 19:38:09 (17476): forwarding host port 54611 to guest port 80
2025-11-20 19:38:09 (17476): Enabling remote desktop for VM.
2025-11-20 19:38:10 (17476): Enabling shared directory for VM.
2025-11-20 19:38:11 (17476): Starting VM using VBoxManage interface. (boinc_d791d04febba2c0f, slot#16)
2025-11-20 19:38:17 (17476): Successfully started VM. (PID = '25228')
2025-11-20 19:38:17 (17476): Reporting VM Process ID to BOINC.
2025-11-20 19:38:17 (17476): Guest Log: BIOS: VirtualBox 7.2.4
2025-11-20 19:38:17 (17476): Guest Log: CPUID EDX: 0x178bfbff
2025-11-20 19:38:17 (17476): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-20 19:38:17 (17476): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-20 19:38:17 (17476): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-20 19:38:17 (17476): Detected: Web Application Enabled (http://localhost:54611)
2025-11-20 19:38:17 (17476): Detected: Remote Desktop Enabled (localhost:54612)
2025-11-20 19:38:17 (17476): Preference change detected
2025-11-20 19:38:17 (17476): Setting CPU throttle for VM. (100%)
2025-11-20 19:38:18 (17476): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-20 19:38:19 (17476): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-20 19:38:19 (17476): Guest Log: BIOS: Booting from Hard Disk...
2025-11-20 19:38:22 (17476): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-20 19:38:22 (17476): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-20 19:38:22 (17476): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-20 19:38:27 (17476): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-20 19:38:27 (17476): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-20 19:38:32 (17476): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-20 19:38:32 (17476): Guest Log: 00:00:00.000151 main     Log opened 2025-11-20T19:38:30.997581000Z
2025-11-20 19:38:32 (17476): Guest Log: 00:00:00.000266 main     OS Product: Linux
2025-11-20 19:38:32 (17476): Guest Log: 00:00:00.000307 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-20 19:38:32 (17476): Guest Log: 00:00:00.000368 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-20 19:38:32 (17476): Guest Log: 00:00:00.000394 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-20 19:38:32 (17476): Guest Log: 00:00:00.000394 main     Process ID: 1287
2025-11-20 19:38:32 (17476): Guest Log: 00:00:00.000395 main     Package type: LINUX_64BITS_GENERIC
2025-11-20 19:38:32 (17476): Guest Log: 00:00:00.001318 main     5.2.32 r132073 started. Verbose level = 0
2025-11-20 19:38:32 (17476): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-20 19:38:32 (17476): Guest Log: [INFO] Mounting shared directory
2025-11-20 19:38:32 (17476): Guest Log: [INFO] Checking for init_data.xml
2025-11-20 19:38:37 (17476): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-20 19:38:37 (17476): Guest Log: [INFO] Detected branch: prod
2025-11-20 19:38:37 (17476): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-20 19:38:37 (17476): Guest Log: Copying input files
2025-11-20 19:38:39 (17476): Guest Log: Copied input files into RunAtlas.
2025-11-20 19:38:39 (17476): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-20 19:38:39 (17476): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-20 19:38:39 (17476): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-20 19:38:39 (17476): Guest Log: Further information can be found at the LHC@home message board.
2025-11-20 19:38:42 (17476): Guest Log: 00:00:10.006997 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 396 000 000ns (GuestNow=1 763 685 522 396 164 000 ns GuestLast=1 763 667 511 000 164 000 ns fSetTimeLastLoop=true )
2025-11-20 19:38:47 (17476): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-20 19:38:47 (17476): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-20 19:38:47 (17476): Guest Log: 2.6.3.0 1564 0 32188 153102 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-20 19:38:48 (17476): Guest Log: copied the webapp to /var/www
2025-11-20 19:38:48 (17476): Guest Log: ATHENA_PROC_NUMBER=3
2025-11-20 19:38:48 (17476): Guest Log: ATHENA_CORE_NUMBER=3
2025-11-20 19:38:48 (17476): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-20 19:38:48 (17476): Guest Log:  *** Starting ATLAS job. (PandaID=6893852879 taskID=47523449) ***
2025-11-20 21:18:24 (17476): Status Report: Elapsed Time: '6000.000000'
2025-11-20 21:18:24 (17476): Status Report: CPU Time: '16801.859375'
2025-11-20 22:58:31 (17476): Status Report: Elapsed Time: '12000.000000'
2025-11-20 22:58:31 (17476): Status Report: CPU Time: '34624.718750'
2025-11-21 00:38:38 (17476): Status Report: Elapsed Time: '18000.000000'
2025-11-21 00:38:38 (17476): Status Report: CPU Time: '52458.703125'
2025-11-21 02:18:45 (17476): Status Report: Elapsed Time: '24000.000000'
2025-11-21 02:18:45 (17476): Status Report: CPU Time: '70290.921875'
2025-11-21 03:58:52 (17476): Status Report: Elapsed Time: '30000.000000'
2025-11-21 03:58:52 (17476): Status Report: CPU Time: '88101.375000'
2025-11-21 05:38:59 (17476): Status Report: Elapsed Time: '36000.000000'
2025-11-21 05:38:59 (17476): Status Report: CPU Time: '105917.203125'
2025-11-21 07:19:06 (17476): Status Report: Elapsed Time: '42000.000000'
2025-11-21 07:19:06 (17476): Status Report: CPU Time: '123729.421875'
2025-11-21 08:59:15 (17476): Status Report: Elapsed Time: '48000.000000'
2025-11-21 08:59:15 (17476): Status Report: CPU Time: '141559.000000'
2025-11-21 10:39:23 (17476): Status Report: Elapsed Time: '54000.000000'
2025-11-21 10:39:23 (17476): Status Report: CPU Time: '159414.093750'
2025-11-21 12:19:31 (17476): Status Report: Elapsed Time: '60000.000000'
2025-11-21 12:19:31 (17476): Status Report: CPU Time: '177268.234375'
2025-11-21 12:29:11 (17476): Guest Log:  *** Job finished ***
2025-11-21 12:29:11 (17476): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-21 12:29:11 (17476): Guest Log: 2025-11-21 17:28:55,884 | INFO     | end of generic workflow (traces error code: 0)
2025-11-21 12:29:11 (17476): Guest Log: 2025-11-21 17:28:55,884 | INFO     | traces error code: 0
2025-11-21 12:29:11 (17476): Guest Log: 2025-11-21 17:28:55,884 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-21 12:29:11 (17476): Guest Log: 2025-11-21 17:29:10,479 | INFO     | PID=5952 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-21 12:29:11 (17476): Guest Log: 2025-11-21 17:29:10,480 | INFO     | found 0 job(s) in 20 queues
2025-11-21 12:29:11 (17476): Guest Log: 2025-11-21 17:29:10,480 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-21 12:29:11 (17476): Guest Log: 2025-11-21 17:29:10,480 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-21 12:29:11 (17476): Guest Log: 2025-11-21 17:29:10,480 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-21 12:29:11 (17476): Guest Log: 2025-11-21 17:29:10,480 | CRITICAL | thread 'MainThread' is not alive
2025-11-21 12:29:11 (17476): Guest Log: 2025-11-21 17:29:10,480 | INFO     | [monitor] control thread has ended
2025-11-21 12:29:11 (17476): Guest Log: 2025-11-21 17:29:10,560 [wrapper] ==== pilot stdout END ====
2025-11-21 12:29:11 (17476): Guest Log: 2025-11-21 17:29:10,565 [wrapper] ==== wrapper stdout RESUME ====
2025-11-21 12:29:11 (17476): Guest Log: 2025-11-21 17:29:10,568 [wrapper] pilotpid: 5952
2025-11-21 12:29:11 (17476): Guest Log: 2025-11-21 17:29:10,574 [wrapper] Pilot exit status: 0
2025-11-21 12:29:11 (17476): Guest Log: 2025-11-21 17:29:10,589 [wrapper] pandaids: 6893852879
2025-11-21 12:29:11 (17476): Guest Log: 2025-11-21 17:29:10,614 [wrapper] cleanup supervisor_pilot 25382 5953
2025-11-21 12:29:11 (17476): Guest Log: 2025-11-21 17:29:10,618 [wrapper] Test setup, not cleaning
2025-11-21 12:29:11 (17476): Guest Log: 2025-11-21 17:29:10,623 [wrapper] apfmon messages muted
2025-11-21 12:29:11 (17476): Guest Log: 2025-11-21 17:29:10,628 [wrapper] ==== wrapper stdout END ====
2025-11-21 12:29:11 (17476): Guest Log: 2025-11-21 17:29:10,632 [wrapper] ==== wrapper stderr END ====
2025-11-21 12:29:11 (17476): Guest Log:  *** Error codes and diagnostics ***
2025-11-21 12:29:11 (17476): Guest Log:     "exeErrorCode": 0,
2025-11-21 12:29:11 (17476): Guest Log:     "exeErrorDiag": "",
2025-11-21 12:29:11 (17476): Guest Log:     "pilotErrorCode": 0,
2025-11-21 12:29:11 (17476): Guest Log:     "pilotErrorDiag": "",
2025-11-21 12:29:11 (17476): Guest Log:  *** Listing of results directory ***
2025-11-21 12:29:11 (17476): Guest Log: total 913824
2025-11-21 12:29:11 (17476): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 20 12:07 pilot3.tar.gz
2025-11-21 12:29:11 (17476): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 20 12:11 queuedata.json
2025-11-21 12:29:11 (17476): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 20 12:11 runpilot2-wrapper.sh
2025-11-21 12:29:11 (17476): Guest Log: -rwxr-xr-x. 1 atlas atlas     11862 Nov 21 00:38 init_data.xml
2025-11-21 12:29:11 (17476): Guest Log: -rwxr-xr-x. 1 atlas atlas    590104 Nov 21 00:38 input.tar.gz
2025-11-21 12:29:11 (17476): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 21 00:38 start_atlas.sh
2025-11-21 12:29:11 (17476): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 21 00:38 EVNT.47493127._000405.pool.root.1 -> /data/./ATLAS.root_0
2025-11-21 12:29:11 (17476): Guest Log: -rw-r--r--. 1 atlas atlas      2786 Nov 21 00:38 pandaJob.out
2025-11-21 12:29:11 (17476): Guest Log: -rw-------. 1 atlas atlas    989817 Nov 21 00:39 agis_schedconf.cvmfs.json
2025-11-21 12:29:11 (17476): Guest Log: drwx------. 5 atlas atlas      4096 Nov 21 00:39 pilot3
2025-11-21 12:29:11 (17476): Guest Log: -rw-------. 1 atlas atlas 912580555 Nov 21 17:28 HITS.47523449._004043.pool.root.1
2025-11-21 12:29:11 (17476): Guest Log: -rw-------. 1 atlas atlas      1038 Nov 21 17:28 memory_monitor_summary.json
2025-11-21 12:29:11 (17476): Guest Log: -rw-------. 1 atlas atlas   1526164 Nov 21 17:28 agis_ddmendpoints.agis.ALL.json
2025-11-21 12:29:11 (17476): Guest Log: -rw-------. 1 atlas atlas   1567795 Nov 21 17:28 log.47523449._004043.job.log.tgz.1
2025-11-21 12:29:11 (17476): Guest Log: -rw-------. 1 atlas atlas        95 Nov 21 17:28 pilot_heartbeat.json
2025-11-21 12:29:11 (17476): Guest Log: -rw-------. 1 atlas atlas      8658 Nov 21 17:28 heartbeat.json
2025-11-21 12:29:11 (17476): Guest Log: -rw-------. 1 atlas atlas       814 Nov 21 17:29 pilotlog.txt
2025-11-21 12:29:11 (17476): Guest Log: -rw-------. 1 atlas atlas   8097682 Nov 21 17:29 log.47523449._004043.job.log.1
2025-11-21 12:29:11 (17476): Guest Log: -rw-------. 1 atlas atlas       353 Nov 21 17:29 output.list
2025-11-21 12:29:11 (17476): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 21 17:29 runtime_log
2025-11-21 12:29:11 (17476): Guest Log: -rw-------. 1 atlas atlas   9687040 Nov 21 17:29 result.tar.gz
2025-11-21 12:29:11 (17476): Guest Log: -rw-r--r--. 1 atlas atlas      8747 Nov 21 17:29 runtime_log.err
2025-11-21 12:29:11 (17476): Guest Log: -rw-------. 1 atlas atlas       662 Nov 21 17:29 3pBNDmfgIg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmKkHKDmvSqwWn.diag
2025-11-21 12:29:11 (17476): Guest Log: Looking for outputfile HITS.47523449._004043.pool.root.1
2025-11-21 12:29:11 (17476): Guest Log: HITS file was successfully produced
2025-11-21 12:29:11 (17476): Guest Log: -rw-------. 1 atlas atlas 912580555 Nov 21 17:28 /home/atlas/RunAtlas/HITS.47523449._004043.pool.root.1
2025-11-21 12:29:15 (17476): Guest Log: Successfully finished the ATLAS job!
2025-11-21 12:29:15 (17476): Guest Log: Copying the results back to the shared directory!
2025-11-21 12:29:15 (17476): Guest Log:  *** Contents of shared directory: ***
2025-11-21 12:29:15 (17476): Guest Log: total 1299464
2025-11-21 12:29:15 (17476): Guest Log: -rwxrwxrwx. 1 root root 407759065 Nov 21 00:38 ATLAS.root_0
2025-11-21 12:29:15 (17476): Guest Log: -rwxrwxrwx. 1 root root 912580555 Nov 21 17:29 HITS.pool.root.1
2025-11-21 12:29:15 (17476): Guest Log: -rwxrwxrwx. 1 root root     11862 Nov 21 00:38 init_data.xml
2025-11-21 12:29:15 (17476): Guest Log: -rwxrwxrwx. 1 root root    590104 Nov 21 00:37 input.tar.gz
2025-11-21 12:29:15 (17476): Guest Log: -rwxrwxrwx. 1 root root   9687040 Nov 21 17:29 result.tar.gz
2025-11-21 12:29:15 (17476): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 21 00:37 start_atlas.sh
2025-11-21 12:29:15 (17476): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-21 12:29:15 (17476): VM Completion File Detected.
2025-11-21 12:29:15 (17476): Powering off VM.
2025-11-21 12:29:15 (17476): Successfully stopped VM.
2025-11-21 12:29:15 (17476): Deregistering VM. (boinc_d791d04febba2c0f, slot#16)
2025-11-21 12:29:15 (17476): Removing network bandwidth throttle group from VM.
2025-11-21 12:29:16 (17476): Removing VM from VirtualBox.
2025-11-21 12:29:21 (17476): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN