Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:28:20 (1113592): wrapper (7.7.26015): starting
20:28:20 (1113592): wrapper: running run_atlas (--nthreads 4)
[2025-11-24 20:28:20] Arguments: --nthreads 4
[2025-11-24 20:28:20] Threads: 4
[2025-11-24 20:28:20] Checking for CVMFS
[2025-11-24 20:28:20] No cvmfs_config command found, will try listing directly
[2025-11-24 20:28:20] CVMFS is ok
[2025-11-24 20:28:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 20:28:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 20:28:20] Further information can be found at the LHC@home message board.
[2025-11-24 20:28:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 20:28:20] Checking for apptainer binary...
[2025-11-24 20:28:20] which: no apptainer in ((null))
[2025-11-24 20:28:20] apptainer is not installed, using version from CVMFS
[2025-11-24 20:28:20] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 20:28:20] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2025-11-24 20:28:20] apptainer works
[2025-11-24 20:28:20] Set ATHENA_PROC_NUMBER=4
[2025-11-24 20:28:20] Set ATHENA_CORE_NUMBER=4
[2025-11-24 20:28:20] Starting ATLAS job with PandaID=6893862610
[2025-11-24 20:28:20] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 18:51:48]  *** The last 200 lines of the pilot log: ***
[2025-11-25 18:51:48] 2025-11-25 17:45:58,477 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 18:51:48] 2025-11-25 17:46:00,260 | INFO     | time since job start (80248s) is within the limit (172800.0s)
[2025-11-25 18:51:48] 2025-11-25 17:46:00,599 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 18:51:48] 2025-11-25 17:46:00,607 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2634.4968499999995
[2025-11-25 18:51:48] 2025-11-25 17:46:00,615 | INFO     | using path: /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6893862610/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 18:51:48] 2025-11-25 17:46:00,615 | INFO     | extracted standard info from prmon json
[2025-11-25 18:51:48] 2025-11-25 17:46:00,616 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 18:51:48] 2025-11-25 17:46:00,616 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 18:51:48] 2025-11-25 17:46:00,641 | INFO     | fitting pss+swap vs Time
[2025-11-25 18:51:48] 2025-11-25 17:46:00,643 | INFO     | sum of square deviations: 705107706286.999
[2025-11-25 18:51:48] 2025-11-25 17:46:00,687 | INFO     | sum of deviations: 1897670815526.8525
[2025-11-25 18:51:48] 2025-11-25 17:46:00,688 | INFO     | mean x: 1764052616.0007606
[2025-11-25 18:51:48] 2025-11-25 17:46:00,688 | INFO     | mean y: 2316033.142205323
[2025-11-25 18:51:48] 2025-11-25 17:46:00,688 | INFO     | intersect: -4745314912.58437
[2025-11-25 18:51:48] 2025-11-25 17:46:00,690 | INFO     | chi2: 3.9802869881847744
[2025-11-25 18:51:48] 2025-11-25 17:46:00,692 | INFO     | sum of square deviations: 697095193569.4996
[2025-11-25 18:51:48] 2025-11-25 17:46:00,735 | INFO     | sum of deviations: 2152496669565.6365
[2025-11-25 18:51:48] 2025-11-25 17:46:00,736 | INFO     | mean x: 1764052463.5007634
[2025-11-25 18:51:48] 2025-11-25 17:46:00,736 | INFO     | mean y: 2320880.861832061
[2025-11-25 18:51:48] 2025-11-25 17:46:00,736 | INFO     | intersect: -5444735830.548245
[2025-11-25 18:51:48] 2025-11-25 17:46:00,738 | INFO     | chi2: 2.213493900308038
[2025-11-25 18:51:48] 2025-11-25 17:46:00,738 | INFO     | current chi2=2.213493900308038 (change=44.388585373902636 %)
[2025-11-25 18:51:48] 2025-11-25 17:46:00,740 | INFO     | sum of square deviations: 689143612226.9994
[2025-11-25 18:51:48] 2025-11-25 17:46:00,783 | INFO     | sum of deviations: 2215764500336.2217
[2025-11-25 18:51:48] 2025-11-25 17:46:00,783 | INFO     | mean x: 1764052311.0007663
[2025-11-25 18:51:48] 2025-11-25 17:46:00,784 | INFO     | mean y: 2322093.7793103447
[2025-11-25 18:51:48] 2025-11-25 17:46:00,784 | INFO     | intersect: -5669535583.0557785
[2025-11-25 18:51:48] 2025-11-25 17:46:00,786 | INFO     | chi2: 2.0480974295300656
[2025-11-25 18:51:48] 2025-11-25 17:46:00,786 | INFO     | current chi2=2.0480974295300656 (change=7.472190041045755 %)
[2025-11-25 18:51:48] 2025-11-25 17:46:00,786 | INFO     | right removable region: 1304
[2025-11-25 18:51:48] 2025-11-25 17:46:00,788 | INFO     | sum of square deviations: 697095192959.4996
[2025-11-25 18:51:48] 2025-11-25 17:46:00,832 | INFO     | sum of deviations: 1652164752031.1565
[2025-11-25 18:51:48] 2025-11-25 17:46:00,832 | INFO     | mean x: 1764052768.5007634
[2025-11-25 18:51:48] 2025-11-25 17:46:00,832 | INFO     | mean y: 2320699.844274809
[2025-11-25 18:51:48] 2025-11-25 17:46:00,832 | INFO     | intersect: -4178608725.9727063
[2025-11-25 18:51:48] 2025-11-25 17:46:00,834 | INFO     | chi2: 2.141800214715828
[2025-11-25 18:51:48] 2025-11-25 17:46:00,834 | INFO     | current chi2=2.141800214715828 (change=46.189804376578266 %)
[2025-11-25 18:51:48] 2025-11-25 17:46:00,836 | INFO     | sum of square deviations: 689143611006.9994
[2025-11-25 18:51:48] 2025-11-25 17:46:00,880 | INFO     | sum of deviations: 1625757168202.9546
[2025-11-25 18:51:48] 2025-11-25 17:46:00,880 | INFO     | mean x: 1764052921.0007663
[2025-11-25 18:51:48] 2025-11-25 17:46:00,880 | INFO     | mean y: 2321206.0459770113
[2025-11-25 18:51:48] 2025-11-25 17:46:00,880 | INFO     | intersect: -4159252137.4486456
[2025-11-25 18:51:48] 2025-11-25 17:46:00,882 | INFO     | chi2: 2.1398118830643473
[2025-11-25 18:51:48] 2025-11-25 17:46:00,882 | INFO     | current chi2=2.1398118830643473 (change=0.09283459950276611 %)
[2025-11-25 18:51:48] 2025-11-25 17:46:00,882 | INFO     | left removable region: 20
[2025-11-25 18:51:48] 2025-11-25 17:46:00,884 | INFO     | sum of square deviations: 656407090292.9991
[2025-11-25 18:51:48] 2025-11-25 17:46:00,926 | INFO     | sum of deviations: 1935480431260.7317
[2025-11-25 18:51:48] 2025-11-25 17:46:00,926 | INFO     | mean x: 1764052890.500779
[2025-11-25 18:51:48] 2025-11-25 17:46:00,927 | INFO     | mean y: 2327950.770249221
[2025-11-25 18:51:48] 2025-11-25 17:46:00,927 | INFO     | intersect: -5199154330.216628
[2025-11-25 18:51:48] 2025-11-25 17:46:00,929 | INFO     | chi2: 0.1653136209336336
[2025-11-25 18:51:48] 2025-11-25 17:46:00,929 | INFO     | current memory leak: 2.95 B/s (using 1284 data points, chi2=0.17)
[2025-11-25 18:51:48] 2025-11-25 17:46:00,930 | INFO     | could have reported an average CPU frequency of 2598 MHz (48 samples)
[2025-11-25 18:51:48] 2025-11-25 17:46:00,930 | INFO     | ..............................
[2025-11-25 18:51:48] 2025-11-25 17:46:00,930 | INFO     | . Timing measurements:
[2025-11-25 18:51:48] 2025-11-25 17:46:00,931 | INFO     | . get job = 0 s
[2025-11-25 18:51:48] 2025-11-25 17:46:00,931 | INFO     | . initial setup = 1 s
[2025-11-25 18:51:48] 2025-11-25 17:46:00,931 | INFO     | . payload setup = 5 s
[2025-11-25 18:51:48] 2025-11-25 17:46:00,931 | INFO     | . stage-in = 0 s
[2025-11-25 18:51:48] 2025-11-25 17:46:00,931 | INFO     | . payload execution = 80213 s
[2025-11-25 18:51:48] 2025-11-25 17:46:00,931 | INFO     | . stage-out = 2 s
[2025-11-25 18:51:48] 2025-11-25 17:46:00,931 | INFO     | . log creation = 0 s
[2025-11-25 18:51:48] 2025-11-25 17:46:00,931 | INFO     | ..............................
[2025-11-25 18:51:48] 2025-11-25 17:46:01,042 | INFO     | 
[2025-11-25 18:51:48] 2025-11-25 17:46:01,042 | INFO     | job summary report
[2025-11-25 18:51:48] 2025-11-25 17:46:01,043 | INFO     | --------------------------------------------------
[2025-11-25 18:51:48] 2025-11-25 17:46:01,043 | INFO     | PanDA job id: 6893862610
[2025-11-25 18:51:48] 2025-11-25 17:46:01,043 | INFO     | task id: 47523449
[2025-11-25 18:51:48] 2025-11-25 17:46:01,043 | INFO     | errors: (none)
[2025-11-25 18:51:48] 2025-11-25 17:46:01,043 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 18:51:48] 2025-11-25 17:46:01,043 | INFO     | pilot state: finished 
[2025-11-25 18:51:48] 2025-11-25 17:46:01,043 | INFO     | transexitcode: 0
[2025-11-25 18:51:48] 2025-11-25 17:46:01,044 | INFO     | exeerrorcode: 0
[2025-11-25 18:51:48] 2025-11-25 17:46:01,044 | INFO     | exeerrordiag: 
[2025-11-25 18:51:48] 2025-11-25 17:46:01,044 | INFO     | exitcode: 0
[2025-11-25 18:51:48] 2025-11-25 17:46:01,044 | INFO     | exitmsg: OK
[2025-11-25 18:51:48] 2025-11-25 17:46:01,044 | INFO     | cpuconsumptiontime: 317536 s
[2025-11-25 18:51:48] 2025-11-25 17:46:01,044 | INFO     | nevents: 1000
[2025-11-25 18:51:48] 2025-11-25 17:46:01,044 | INFO     | neventsw: 0
[2025-11-25 18:51:48] 2025-11-25 17:46:01,044 | INFO     | pid: 1124296
[2025-11-25 18:51:48] 2025-11-25 17:46:01,044 | INFO     | pgrp: 1124296
[2025-11-25 18:51:48] 2025-11-25 17:46:01,045 | INFO     | corecount: 4
[2025-11-25 18:51:48] 2025-11-25 17:46:01,045 | INFO     | event service: False
[2025-11-25 18:51:48] 2025-11-25 17:46:01,045 | INFO     | sizes: {0: 2284270, 4: 2284532, 11: 2284560, 80223: 2346818, 80226: 2355839, 80228: 2355895, 80233: 2356269}
[2025-11-25 18:51:48] 2025-11-25 17:46:01,045 | INFO     | --------------------------------------------------
[2025-11-25 18:51:48] 2025-11-25 17:46:01,045 | INFO     | 
[2025-11-25 18:51:48] 2025-11-25 17:46:01,045 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2025-11-25 18:51:48] 2025-11-25 17:46:01,063 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 18:51:48] 2025-11-25 17:46:01,064 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 18:51:48] 2025-11-25 17:46:01,064 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 18:51:48] 2025-11-25 17:46:01,064 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 18:51:48] 2025-11-25 17:46:01,064 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 18:51:48] 2025-11-25 17:46:01,064 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 18:51:48] 2025-11-25 17:46:01,064 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 18:51:48] 2025-11-25 17:46:01,065 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 18:51:48] 2025-11-25 17:46:01,065 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 18:51:48] 2025-11-25 17:46:01,065 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 18:51:48] 2025-11-25 17:46:01,065 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 18:51:48] 2025-11-25 17:46:01,065 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 18:51:48] 2025-11-25 17:46:01,065 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 18:51:48] 2025-11-25 17:46:01,065 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 18:51:48] 2025-11-25 17:46:01,065 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 18:51:48] 2025-11-25 17:46:01,066 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 18:51:48] 2025-11-25 17:46:01,066 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 18:51:48] 2025-11-25 17:46:01,066 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 18:51:48] 2025-11-25 17:46:01,066 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 18:51:48] 2025-11-25 17:46:01,066 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 18:51:48] 2025-11-25 17:46:01,066 | INFO     | job 6893862610 has completed (purged errors)
[2025-11-25 18:51:48] 2025-11-25 17:46:01,066 | INFO     | overall cleanup function is called
[2025-11-25 18:51:48] 2025-11-25 17:46:02,080 | INFO     | --- collectZombieJob: --- 10, [1124296]
[2025-11-25 18:51:48] 2025-11-25 17:46:02,080 | INFO     | zombie collector waiting for pid 1124296
[2025-11-25 18:51:48] 2025-11-25 17:46:02,080 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 18:51:48] 2025-11-25 17:46:02,080 | INFO     | collected zombie processes
[2025-11-25 18:51:48] 2025-11-25 17:46:02,080 | INFO     | will attempt to kill all subprocesses of pid=1124296
[2025-11-25 18:51:48] 2025-11-25 17:46:02,399 | INFO     | process IDs to be killed: [1124296] (in reverse order)
[2025-11-25 18:51:48] 2025-11-25 17:46:02,484 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 18:51:48] 2025-11-25 17:46:02,484 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 18:51:48] 2025-11-25 17:46:02,494 | INFO     | did not find any defunct processes belonging to 1124296
[2025-11-25 18:51:48] 2025-11-25 17:46:02,502 | INFO     | did not find any defunct processes belonging to 1124296
[2025-11-25 18:51:48] 2025-11-25 17:46:02,504 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 18:51:48] 2025-11-25 17:46:02,504 | INFO     | ready for new job
[2025-11-25 18:51:48] 2025-11-25 17:46:02,504 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 18:51:48] 2025-11-25 17:46:02,509 | INFO     | ***************************************
[2025-11-25 18:51:48] 2025-11-25 17:46:02,510 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 18:51:48] 2025-11-25 17:46:02,510 | INFO     | ***************************************
[2025-11-25 18:51:48] 2025-11-25 17:46:02,510 | INFO     | 
[2025-11-25 18:51:48] 2025-11-25 17:46:02,513 | INFO     | architecture information:
[2025-11-25 18:51:48] 2025-11-25 17:46:02,513 | INFO     | executing command: cat /etc/os-release
[2025-11-25 18:51:48] 2025-11-25 17:46:02,525 | INFO     | cat /etc/os-release:
[2025-11-25 18:51:48] NAME="CentOS Linux"
[2025-11-25 18:51:48] VERSION="7 (Core)"
[2025-11-25 18:51:48] ID="centos"
[2025-11-25 18:51:48] ID_LIKE="rhel fedora"
[2025-11-25 18:51:48] VERSION_ID="7"
[2025-11-25 18:51:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 18:51:48] ANSI_COLOR="0;31"
[2025-11-25 18:51:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 18:51:48] HOME_URL="https://www.centos.org/"
[2025-11-25 18:51:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 18:51:48] 
[2025-11-25 18:51:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 18:51:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 18:51:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 18:51:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 18:51:48] 
[2025-11-25 18:51:48] 2025-11-25 17:46:02,525 | INFO     | ***************************************
[2025-11-25 18:51:48] 2025-11-25 17:46:03,028 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2025-11-25 18:51:48] 2025-11-25 17:46:03,042 | INFO     | sufficient remaining disk space (1658445627392 B)
[2025-11-25 18:51:48] 2025-11-25 17:46:03,043 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 18:51:48] 2025-11-25 17:46:03,043 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 18:51:48] 2025-11-25 17:46:03,043 | INFO     | update_server=False
[2025-11-25 18:51:48] 2025-11-25 17:46:03,043 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 18:51:48] 2025-11-25 17:46:03,044 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 18:51:48] 2025-11-25 17:46:03,317 | INFO     | all payload control threads have been joined
[2025-11-25 18:51:48] 2025-11-25 17:46:03,488 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 18:51:48] 2025-11-25 17:46:03,488 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 18:51:48] 2025-11-25 17:46:03,489 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 18:51:48] 2025-11-25 17:46:03,489 | INFO     | will abort loop
[2025-11-25 18:51:48] 2025-11-25 17:46:03,983 | INFO     | all data control threads have been joined
[2025-11-25 18:51:48] 2025-11-25 17:46:04,049 | INFO     | [job] queue monitor thread has finished
[2025-11-25 18:51:48] 2025-11-25 17:46:04,049 | INFO     | [job] retrieve thread has finished
[2025-11-25 18:51:48] 2025-11-25 17:46:04,322 | INFO     | [payload] control thread has finished
[2025-11-25 18:51:48] 2025-11-25 17:46:04,322 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 18:51:48] 2025-11-25 17:46:04,399 | INFO     | all job control threads have been joined
[2025-11-25 18:51:48] 2025-11-25 17:46:04,494 | INFO     | [job] job monitor thread has finished
[2025-11-25 18:51:48] 2025-11-25 17:46:04,624 | INFO     | [job] validate thread has finished
[2025-11-25 18:51:48] 2025-11-25 17:46:04,707 | INFO     | [data] copytool_in thread has finished
[2025-11-25 18:51:48] 2025-11-25 17:46:04,836 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 18:51:48] 2025-11-25 17:46:04,900 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 18:51:48] 2025-11-25 17:46:04,958 | INFO     | [payload] validate_post thread has finished
[2025-11-25 18:51:48] 2025-11-25 17:46:04,988 | INFO     | [data] control thread has finished
[2025-11-25 18:51:48] 2025-11-25 17:46:05,336 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 18:51:48] 2025-11-25 17:46:05,404 | INFO     | [job] control thread has finished
[2025-11-25 18:51:48] 2025-11-25 17:46:05,411 | INFO     | [payload] failed_post thread has finished
[2025-11-25 18:51:48] 2025-11-25 17:46:05,531 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 18:51:48] 2025-11-25 17:46:06,328 | INFO     | [data] copytool_out thread has finished
[2025-11-25 18:51:48] 2025-11-25 17:46:06,329 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 18:51:48] 2025-11-25 17:46:10,331 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 18:51:48] 2025-11-25 17:46:33,775 | INFO     | PID=1117577 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 18:51:48] 2025-11-25 17:46:33,776 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 18:51:48] 2025-11-25 17:46:33,776 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 18:51:48] 2025-11-25 17:46:33,776 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 18:51:48] 2025-11-25 17:46:43,941 | INFO     | [monitor] cgroup control has ended
[2025-11-25 18:51:48] 2025-11-25 17:46:45,702 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22763884332864)>', '<ExcThread(monitor, started 22763643299584)>']
[2025-11-25 18:51:48] 2025-11-25 17:46:45,826 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 18:51:48] 2025-11-25 17:46:45,827 | INFO     | [monitor] control thread has ended
[2025-11-25 18:51:48] 2025-11-25 17:46:50,727 | INFO     | all workflow threads have been joined
[2025-11-25 18:51:48] 2025-11-25 17:46:50,727 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 18:51:48] 2025-11-25 17:46:50,727 | INFO     | traces error code: 0
[2025-11-25 18:51:48] 2025-11-25 17:46:50,727 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 18:51:48] 2025-11-25 17:46:50,834 [wrapper] ==== pilot stdout END ====
[2025-11-25 18:51:48] 2025-11-25 17:46:50,837 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 18:51:48] 2025-11-25 17:46:50,839 [wrapper] pilotpid: 1117577
[2025-11-25 18:51:48] 2025-11-25 17:46:50,842 [wrapper] Pilot exit status: 0
[2025-11-25 18:51:48] 2025-11-25 17:46:50,849 [wrapper] pandaids: 6893862610
[2025-11-25 18:51:48] 2025-11-25 17:46:50,907 [wrapper] cleanup supervisor_pilot 1897355 1117578
[2025-11-25 18:51:48] 2025-11-25 17:46:50,910 [wrapper] Test setup, not cleaning
[2025-11-25 18:51:48] 2025-11-25 17:46:50,912 [wrapper] apfmon messages muted
[2025-11-25 18:51:48] 2025-11-25 17:46:50,915 [wrapper] ==== wrapper stdout END ====
[2025-11-25 18:51:48] 2025-11-25 17:46:50,917 [wrapper] ==== wrapper stderr END ====
[2025-11-25 18:51:48]  *** Error codes and diagnostics ***
[2025-11-25 18:51:48]     "exeErrorCode": 0,
[2025-11-25 18:51:48]     "exeErrorDiag": "",
[2025-11-25 18:51:48]     "pilotErrorCode": 0,
[2025-11-25 18:51:48]     "pilotErrorDiag": "",
[2025-11-25 18:51:48]  *** Listing of results directory ***
[2025-11-25 18:51:48] total 1327184
[2025-11-25 18:51:48] -rw-r--r-- 1 boinc boinc    576529 Nov 20 15:06 pilot3.tar.gz
[2025-11-25 18:51:48] -rwx------ 1 boinc boinc     36292 Nov 20 15:15 runpilot2-wrapper.sh
[2025-11-25 18:51:48] -rw-r--r-- 1 boinc boinc      5112 Nov 20 15:15 queuedata.json
[2025-11-25 18:51:48] -rw-r--r-- 1 boinc boinc       100 Nov 24 20:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 18:51:48] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 20:28 run_atlas
[2025-11-25 18:51:48] -rw-r--r-- 1 boinc boinc       105 Nov 24 20:28 job.xml
[2025-11-25 18:51:48] -rw-r--r-- 2 boinc boinc 409755142 Nov 24 20:28 EVNT.47493127._000594.pool.root.1
[2025-11-25 18:51:48] -rw-r--r-- 1 boinc boinc      6421 Nov 24 20:28 init_data.xml
[2025-11-25 18:51:48] -rw-r--r-- 2 boinc boinc     15847 Nov 24 20:28 start_atlas.sh
[2025-11-25 18:51:48] drwxrwx--x 2 boinc boinc      4096 Nov 24 20:28 shared
[2025-11-25 18:51:48] -rw-r--r-- 2 boinc boinc    590094 Nov 24 20:28 input.tar.gz
[2025-11-25 18:51:48] -rw-r--r-- 1 boinc boinc         0 Nov 24 20:28 boinc_lockfile
[2025-11-25 18:51:48] -rw-r--r-- 1 boinc boinc      2785 Nov 24 20:28 pandaJob.out
[2025-11-25 18:51:48] -rw------- 1 boinc boinc    991801 Nov 24 20:28 agis_schedconf.cvmfs.json
[2025-11-25 18:51:48] drwx------ 5 boinc boinc      4096 Nov 24 20:28 pilot3
[2025-11-25 18:51:48] -rw-r--r-- 1 boinc boinc       531 Nov 25 18:32 boinc_task_state.xml
[2025-11-25 18:51:48] -rw------- 1 boinc boinc 918896869 Nov 25 18:45 HITS.47523449._005939.pool.root.1
[2025-11-25 18:51:48] -rw------- 1 boinc boinc      1045 Nov 25 18:45 memory_monitor_summary.json
[2025-11-25 18:51:48] -rw------- 1 boinc boinc   1516240 Nov 25 18:45 agis_ddmendpoints.agis.ALL.json
[2025-11-25 18:51:48] -rw------- 1 boinc boinc   1973689 Nov 25 18:45 log.47523449._005939.job.log.tgz.1
[2025-11-25 18:51:48] -rw------- 1 boinc boinc      8633 Nov 25 18:46 heartbeat.json
[2025-11-25 18:51:48] -rw------- 1 boinc boinc        95 Nov 25 18:46 pilot_heartbeat.json
[2025-11-25 18:51:48] -rw------- 1 boinc boinc      4945 Nov 25 18:46 pilotlog.txt
[2025-11-25 18:51:48] -rw------- 1 boinc boinc  11262031 Nov 25 18:46 log.47523449._005939.job.log.1
[2025-11-25 18:51:48] -rw------- 1 boinc boinc       353 Nov 25 18:46 output.list
[2025-11-25 18:51:48] -rw-r--r-- 1 boinc boinc       620 Nov 25 18:46 runtime_log
[2025-11-25 18:51:48] -rw------- 1 boinc boinc  13250560 Nov 25 18:46 result.tar.gz
[2025-11-25 18:51:48] -rw-r--r-- 1 boinc boinc      9206 Nov 25 18:46 runtime_log.err
[2025-11-25 18:51:48] -rw------- 1 boinc boinc       671 Nov 25 18:46 D9VNDmZcKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmR3HKDmaxpPKn.diag
[2025-11-25 18:51:48] -rw-r--r-- 1 boinc boinc        28 Nov 25 18:51 wrapper_checkpoint.txt
[2025-11-25 18:51:48] -rw-r--r-- 1 boinc boinc      8192 Nov 25 18:51 boinc_mmap_file
[2025-11-25 18:51:48] -rw-r--r-- 1 boinc boinc     21130 Nov 25 18:51 stderr.txt
[2025-11-25 18:51:48] HITS file was successfully produced:
[2025-11-25 18:51:48] -rw------- 1 boinc boinc 918896869 Nov 25 18:45 shared/HITS.pool.root.1
[2025-11-25 18:51:48]  *** Contents of shared directory: ***
[2025-11-25 18:51:48] total 1311060
[2025-11-25 18:51:48] -rw-r--r-- 2 boinc boinc 409755142 Nov 24 20:28 ATLAS.root_0
[2025-11-25 18:51:48] -rw-r--r-- 2 boinc boinc     15847 Nov 24 20:28 start_atlas.sh
[2025-11-25 18:51:48] -rw-r--r-- 2 boinc boinc    590094 Nov 24 20:28 input.tar.gz
[2025-11-25 18:51:48] -rw------- 1 boinc boinc 918896869 Nov 25 18:45 HITS.pool.root.1
[2025-11-25 18:51:48] -rw------- 1 boinc boinc  13250560 Nov 25 18:46 result.tar.gz
18:51:50 (1113592): run_atlas exited; CPU time 320504.759761
18:51:50 (1113592): called boinc_finish(0)

</stderr_txt>
]]>

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