Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:38:20 (1905): wrapper (7.7.26015): starting
00:38:20 (1905): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 00:38:20] Arguments: --nthreads 8
[2025-11-24 00:38:20] Threads: 8
[2025-11-24 00:38:20] Checking for CVMFS
[2025-11-24 00:38:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:38:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:38:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:38:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:38:23] 2.11.2.0 19767 77115 93628 153226 3 85 15465294 25165825 4632 130560 2 22899668 99.871 13783853 2300 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 00:38:23] CVMFS is ok
[2025-11-24 00:38:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:38:23] Checking for apptainer binary...
[2025-11-24 00:38:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:38:23] Running /usr/bin/apptainer --version
[2025-11-24 00:38:23] apptainer version 1.3.2-1.el7
[2025-11-24 00:38:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:38:30] cg-vwn305.simple-grid.lan
[2025-11-24 00:38:30] apptainer works
[2025-11-24 00:38:30] Set ATHENA_PROC_NUMBER=8
[2025-11-24 00:38:30] Set ATHENA_CORE_NUMBER=8
[2025-11-24 00:38:30] Starting ATLAS job with PandaID=6893852224
[2025-11-24 00:38:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 21:27:53]  *** The last 200 lines of the pilot log: ***
[2025-11-24 21:27:54] 2025-11-24 20:26:35,441 | INFO     | time since job start (74643s) is within the limit (172800.0s)
[2025-11-24 21:27:54] 2025-11-24 20:26:35,636 | INFO     | monitor loop #5011: job 0:6893852224 is in state 'finished'
[2025-11-24 21:27:54] 2025-11-24 20:26:35,637 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 21:27:54] 2025-11-24 20:26:37,452 | INFO     | time since job start (74645s) is within the limit (172800.0s)
[2025-11-24 21:27:54] 2025-11-24 20:26:38,141 | INFO     | monitor loop #5012: job 0:6893852224 is in state 'finished'
[2025-11-24 21:27:54] 2025-11-24 20:26:38,142 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 21:27:54] 2025-11-24 20:26:39,459 | INFO     | time since job start (74647s) is within the limit (172800.0s)
[2025-11-24 21:27:54] 2025-11-24 20:26:40,656 | INFO     | monitor loop #5013: job 0:6893852224 is in state 'finished'
[2025-11-24 21:27:54] 2025-11-24 20:26:40,657 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 21:27:54] 2025-11-24 20:26:41,469 | INFO     | time since job start (74649s) is within the limit (172800.0s)
[2025-11-24 21:27:54] 2025-11-24 20:26:43,159 | INFO     | monitor loop #5014: job 0:6893852224 is in state 'finished'
[2025-11-24 21:27:54] 2025-11-24 20:26:43,160 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 21:27:54] 2025-11-24 20:26:43,475 | INFO     | time since job start (74651s) is within the limit (172800.0s)
[2025-11-24 21:27:54] 2025-11-24 20:26:44,620 | INFO     | PID=5702 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 21:27:54] 2025-11-24 20:26:44,621 | INFO     | .. there are 2 such processes running
[2025-11-24 21:27:54] 2025-11-24 20:26:45,282 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 21:27:54] 2025-11-24 20:26:45,283 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-11-24 21:27:54] 2025-11-24 20:26:45,285 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6893852224/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 21:27:54] 2025-11-24 20:26:45,285 | INFO     | extracted standard info from prmon json
[2025-11-24 21:27:54] 2025-11-24 20:26:45,286 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 21:27:54] 2025-11-24 20:26:45,286 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 21:27:54] 2025-11-24 20:26:45,342 | INFO     | fitting pss+swap vs Time
[2025-11-24 21:27:54] 2025-11-24 20:26:45,345 | INFO     | sum of square deviations: 554795515313.4398
[2025-11-24 21:27:54] 2025-11-24 20:26:45,399 | INFO     | sum of deviations: 2304002862769.542
[2025-11-24 21:27:54] 2025-11-24 20:26:45,399 | INFO     | mean x: 1763978877.541186
[2025-11-24 21:27:54] 2025-11-24 20:26:45,400 | INFO     | mean y: 2811752.439044481
[2025-11-24 21:27:54] 2025-11-24 20:26:45,400 | INFO     | intersect: -7322792495.504019
[2025-11-24 21:27:54] 2025-11-24 20:26:45,402 | INFO     | chi2: 27.984139389375102
[2025-11-24 21:27:54] 2025-11-24 20:26:45,404 | INFO     | sum of square deviations: 547969103060.4973
[2025-11-24 21:27:54] 2025-11-24 20:26:45,458 | INFO     | sum of deviations: 2693493758447.3228
[2025-11-24 21:27:54] 2025-11-24 20:26:45,459 | INFO     | mean x: 1763978725.0454922
[2025-11-24 21:27:54] 2025-11-24 20:26:45,459 | INFO     | mean y: 2820451.794044665
[2025-11-24 21:27:54] 2025-11-24 20:26:45,459 | INFO     | intersect: -8667861269.871101
[2025-11-24 21:27:54] 2025-11-24 20:26:45,461 | INFO     | chi2: 24.766296405914666
[2025-11-24 21:27:54] 2025-11-24 20:26:45,461 | INFO     | current chi2=24.766296405914666 (change=11.498809874718436 %)
[2025-11-24 21:27:54] 2025-11-24 20:26:45,461 | INFO     | right removable region: 1208
[2025-11-24 21:27:54] 2025-11-24 20:26:45,463 | INFO     | sum of square deviations: 547968332020.4974
[2025-11-24 21:27:54] 2025-11-24 20:26:45,523 | INFO     | sum of deviations: 1805035526595.3938
[2025-11-24 21:27:54] 2025-11-24 20:26:45,524 | INFO     | mean x: 1763979030.0454922
[2025-11-24 21:27:54] 2025-11-24 20:26:45,524 | INFO     | mean y: 2822897.283705542
[2025-11-24 21:27:54] 2025-11-24 20:26:45,524 | INFO     | intersect: -5807813651.111383
[2025-11-24 21:27:54] 2025-11-24 20:26:45,526 | INFO     | chi2: 23.397836349501713
[2025-11-24 21:27:54] 2025-11-24 20:26:45,526 | INFO     | current chi2=23.397836349501713 (change=16.388937233548432 %)
[2025-11-24 21:27:54] 2025-11-24 20:26:45,526 | INFO     | left removable region: 10
[2025-11-24 21:27:54] 2025-11-24 20:26:45,528 | INFO     | sum of square deviations: 533147068891.866
[2025-11-24 21:27:54] 2025-11-24 20:26:45,606 | INFO     | sum of deviations: 1852757383837.3337
[2025-11-24 21:27:54] 2025-11-24 20:26:45,606 | INFO     | mean x: 1763978999.5550919
[2025-11-24 21:27:54] 2025-11-24 20:26:45,606 | INFO     | mean y: 2843456.79048414
[2025-11-24 21:27:54] 2025-11-24 20:26:45,606 | INFO     | intersect: -6127219535.3077755
[2025-11-24 21:27:54] 2025-11-24 20:26:45,608 | INFO     | chi2: 16.040926423211026
[2025-11-24 21:27:54] 2025-11-24 20:26:45,608 | INFO     | current memory leak: 3.48 B/s (using 1198 data points, chi2=16.04)
[2025-11-24 21:27:54] 2025-11-24 20:26:45,610 | INFO     | could have reported an average CPU frequency of 1999 MHz (41 samples)
[2025-11-24 21:27:54] 2025-11-24 20:26:45,610 | INFO     | ..............................
[2025-11-24 21:27:54] 2025-11-24 20:26:45,610 | INFO     | . Timing measurements:
[2025-11-24 21:27:54] 2025-11-24 20:26:45,610 | INFO     | . get job = 0 s
[2025-11-24 21:27:54] 2025-11-24 20:26:45,610 | INFO     | . initial setup = 9 s
[2025-11-24 21:27:54] 2025-11-24 20:26:45,611 | INFO     | . payload setup = 163 s
[2025-11-24 21:27:54] 2025-11-24 20:26:45,611 | INFO     | . stage-in = 0 s
[2025-11-24 21:27:54] 2025-11-24 20:26:45,611 | INFO     | . payload execution = 74164 s
[2025-11-24 21:27:54] 2025-11-24 20:26:45,611 | INFO     | . stage-out = 5 s
[2025-11-24 21:27:54] 2025-11-24 20:26:45,611 | INFO     | . log creation = 2 s
[2025-11-24 21:27:54] 2025-11-24 20:26:45,611 | INFO     | ..............................
[2025-11-24 21:27:54] 2025-11-24 20:26:45,623 | INFO     | time since job start (74653s) is within the limit (172800.0s)
[2025-11-24 21:27:54] 2025-11-24 20:26:45,752 | INFO     | 
[2025-11-24 21:27:54] 2025-11-24 20:26:45,752 | INFO     | job summary report
[2025-11-24 21:27:54] 2025-11-24 20:26:45,752 | INFO     | --------------------------------------------------
[2025-11-24 21:27:54] 2025-11-24 20:26:45,752 | INFO     | PanDA job id: 6893852224
[2025-11-24 21:27:54] 2025-11-24 20:26:45,752 | INFO     | task id: 47523449
[2025-11-24 21:27:54] 2025-11-24 20:26:45,752 | INFO     | errors: (none)
[2025-11-24 21:27:54] 2025-11-24 20:26:45,752 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 21:27:54] 2025-11-24 20:26:45,753 | INFO     | pilot state: finished 
[2025-11-24 21:27:54] 2025-11-24 20:26:45,753 | INFO     | transexitcode: 0
[2025-11-24 21:27:54] 2025-11-24 20:26:45,753 | INFO     | exeerrorcode: 0
[2025-11-24 21:27:54] 2025-11-24 20:26:45,753 | INFO     | exeerrordiag: 
[2025-11-24 21:27:54] 2025-11-24 20:26:45,753 | INFO     | exitcode: 0
[2025-11-24 21:27:54] 2025-11-24 20:26:45,753 | INFO     | exitmsg: OK
[2025-11-24 21:27:54] 2025-11-24 20:26:45,753 | INFO     | cpuconsumptiontime: 336746 s
[2025-11-24 21:27:54] 2025-11-24 20:26:45,753 | INFO     | nevents: 1000
[2025-11-24 21:27:54] 2025-11-24 20:26:45,753 | INFO     | neventsw: 0
[2025-11-24 21:27:54] 2025-11-24 20:26:45,753 | INFO     | pid: 12610
[2025-11-24 21:27:54] 2025-11-24 20:26:45,754 | INFO     | pgrp: 12610
[2025-11-24 21:27:54] 2025-11-24 20:26:45,754 | INFO     | corecount: 8
[2025-11-24 21:27:54] 2025-11-24 20:26:45,754 | INFO     | event service: False
[2025-11-24 21:27:54] 2025-11-24 20:26:45,754 | INFO     | sizes: {0: 2297979, 1: 2298664, 2: 2298863, 3: 2298863, 14: 2298891, 24: 2298919, 35: 2299075, 46: 2299103, 57: 2299131, 67: 2299159, 78: 2299187, 89: 2299523, 100
[2025-11-24 21:27:54] 2025-11-24 20:26:45,754 | INFO     | --------------------------------------------------
[2025-11-24 21:27:54] 2025-11-24 20:26:45,754 | INFO     | 
[2025-11-24 21:27:54] 2025-11-24 20:26:45,754 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-24 21:27:54] 2025-11-24 20:26:46,384 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 21:27:54] 2025-11-24 20:26:46,385 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 21:27:54] 2025-11-24 20:26:46,385 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 21:27:54] 2025-11-24 20:26:46,385 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 21:27:54] 2025-11-24 20:26:46,385 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 21:27:54] 2025-11-24 20:26:46,385 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 21:27:54] 2025-11-24 20:26:46,385 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 21:27:54] 2025-11-24 20:26:46,386 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 21:27:54] 2025-11-24 20:26:46,386 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 21:27:54] 2025-11-24 20:26:46,386 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 21:27:54] 2025-11-24 20:26:46,386 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 21:27:54] 2025-11-24 20:26:46,386 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 21:27:54] 2025-11-24 20:26:46,386 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 21:27:54] 2025-11-24 20:26:46,386 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 21:27:54] 2025-11-24 20:26:46,386 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 21:27:54] 2025-11-24 20:26:46,387 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 21:27:54] 2025-11-24 20:26:46,387 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 21:27:54] 2025-11-24 20:26:46,387 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 21:27:54] 2025-11-24 20:26:46,387 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 21:27:54] 2025-11-24 20:26:46,387 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 21:27:54] 2025-11-24 20:26:46,387 | INFO     | job 6893852224 has completed (purged errors)
[2025-11-24 21:27:54] 2025-11-24 20:26:46,387 | INFO     | overall cleanup function is called
[2025-11-24 21:27:54] 2025-11-24 20:26:47,407 | INFO     | --- collectZombieJob: --- 10, [12610]
[2025-11-24 21:27:54] 2025-11-24 20:26:47,408 | INFO     | zombie collector waiting for pid 12610
[2025-11-24 21:27:54] 2025-11-24 20:26:47,408 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 21:27:54] 2025-11-24 20:26:47,408 | INFO     | collected zombie processes
[2025-11-24 21:27:54] 2025-11-24 20:26:47,408 | INFO     | will attempt to kill all subprocesses of pid=12610
[2025-11-24 21:27:54] 2025-11-24 20:26:47,496 | INFO     | process IDs to be killed: [12610] (in reverse order)
[2025-11-24 21:27:54] 2025-11-24 20:26:48,480 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 21:27:54] 2025-11-24 20:26:48,481 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 21:27:54] 2025-11-24 20:26:48,483 | INFO     | did not find any defunct processes belonging to 12610
[2025-11-24 21:27:54] 2025-11-24 20:26:48,490 | INFO     | did not find any defunct processes belonging to 12610
[2025-11-24 21:27:54] 2025-11-24 20:26:48,532 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 21:27:54] 2025-11-24 20:26:48,532 | INFO     | ready for new job
[2025-11-24 21:27:54] 2025-11-24 20:26:48,532 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 21:27:54] 2025-11-24 20:26:48,538 | INFO     | ***************************************
[2025-11-24 21:27:54] 2025-11-24 20:26:48,538 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 21:27:54] 2025-11-24 20:26:48,538 | INFO     | ***************************************
[2025-11-24 21:27:54] 2025-11-24 20:26:48,538 | INFO     | 
[2025-11-24 21:27:54] 2025-11-24 20:26:48,539 | INFO     | pilot is running in a VM
[2025-11-24 21:27:54] 2025-11-24 20:26:48,539 | INFO     | architecture information:
[2025-11-24 21:27:54] 2025-11-24 20:26:48,549 | INFO     | executing command: cat /etc/os-release
[2025-11-24 21:27:54] 2025-11-24 20:26:48,810 | INFO     | cat /etc/os-release:
[2025-11-24 21:27:54] NAME="CentOS Linux"
[2025-11-24 21:27:54] VERSION="7 (Core)"
[2025-11-24 21:27:54] ID="centos"
[2025-11-24 21:27:54] ID_LIKE="rhel fedora"
[2025-11-24 21:27:54] VERSION_ID="7"
[2025-11-24 21:27:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 21:27:54] ANSI_COLOR="0;31"
[2025-11-24 21:27:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 21:27:54] HOME_URL="https://www.centos.org/"
[2025-11-24 21:27:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 21:27:54] 
[2025-11-24 21:27:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 21:27:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 21:27:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 21:27:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 21:27:54] 
[2025-11-24 21:27:54] 2025-11-24 20:26:48,810 | INFO     | ***************************************
[2025-11-24 21:27:54] 2025-11-24 20:26:49,314 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-24 21:27:54] 2025-11-24 20:26:49,497 | INFO     | sufficient remaining disk space (494028193792 B)
[2025-11-24 21:27:54] 2025-11-24 20:26:49,498 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 21:27:54] 2025-11-24 20:26:49,498 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 21:27:54] 2025-11-24 20:26:49,498 | INFO     | update_server=False
[2025-11-24 21:27:54] 2025-11-24 20:26:49,498 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 21:27:54] 2025-11-24 20:26:49,500 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 21:27:54] 2025-11-24 20:26:49,500 | INFO     | aborting loop
[2025-11-24 21:27:54] 2025-11-24 20:26:49,696 | INFO     | all job control threads have been joined
[2025-11-24 21:27:54] 2025-11-24 20:26:49,993 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 21:27:54] 2025-11-24 20:26:50,179 | INFO     | all data control threads have been joined
[2025-11-24 21:27:54] 2025-11-24 20:26:50,504 | INFO     | [job] retrieve thread has finished
[2025-11-24 21:27:54] 2025-11-24 20:26:50,506 | INFO     | [job] job monitor thread has finished
[2025-11-24 21:27:54] 2025-11-24 20:26:50,515 | INFO     | [data] copytool_in thread has finished
[2025-11-24 21:27:54] 2025-11-24 20:26:50,568 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 21:27:54] 2025-11-24 20:26:50,592 | INFO     | [job] validate thread has finished
[2025-11-24 21:27:54] 2025-11-24 20:26:50,703 | INFO     | [job] control thread has finished
[2025-11-24 21:27:54] 2025-11-24 20:26:50,743 | INFO     | all payload control threads have been joined
[2025-11-24 21:27:54] 2025-11-24 20:26:50,766 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 21:27:54] 2025-11-24 20:26:50,855 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 21:27:54] 2025-11-24 20:26:50,877 | INFO     | [payload] failed_post thread has finished
[2025-11-24 21:27:54] 2025-11-24 20:26:51,146 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 21:27:54] 2025-11-24 20:26:51,186 | INFO     | [data] control thread has finished
[2025-11-24 21:27:54] 2025-11-24 20:26:51,538 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 21:27:54] 2025-11-24 20:26:51,545 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 21:27:54] 2025-11-24 20:26:51,750 | INFO     | [payload] control thread has finished
[2025-11-24 21:27:54] 2025-11-24 20:26:51,773 | INFO     | [job] queue monitor thread has finished
[2025-11-24 21:27:54] 2025-11-24 20:26:51,949 | INFO     | [payload] validate_post thread has finished
[2025-11-24 21:27:54] 2025-11-24 20:26:52,576 | INFO     | [data] copytool_out thread has finished
[2025-11-24 21:27:54] 2025-11-24 20:26:54,003 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 21:27:54] 2025-11-24 20:27:18,760 | INFO     | PID=5702 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 21:27:54] 2025-11-24 20:27:18,761 | INFO     | .. there are 2 such processes running
[2025-11-24 21:27:54] 2025-11-24 20:27:18,761 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 21:27:54] 2025-11-24 20:27:18,761 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 21:27:54] 2025-11-24 20:27:18,761 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 21:27:54] 2025-11-24 20:27:40,883 | INFO     | [monitor] cgroup control has ended
[2025-11-24 21:27:54] 2025-11-24 20:27:42,938 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140676248835904)>', '<ExcThread(monitor, started 140675664303872)>']
[2025-11-24 21:27:54] 2025-11-24 20:27:43,907 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 21:27:54] 2025-11-24 20:27:43,908 | INFO     | [monitor] control thread has ended
[2025-11-24 21:27:54] 2025-11-24 20:27:47,963 | INFO     | all workflow threads have been joined
[2025-11-24 21:27:54] 2025-11-24 20:27:47,964 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 21:27:54] 2025-11-24 20:27:47,964 | INFO     | traces error code: 0
[2025-11-24 21:27:54] 2025-11-24 20:27:47,964 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 21:27:54] 2025-11-24 20:27:48,320 [wrapper] ==== pilot stdout END ====
[2025-11-24 21:27:54] 2025-11-24 20:27:48,412 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 21:27:54] 2025-11-24 20:27:48,519 [wrapper] pilotpid: 5702
[2025-11-24 21:27:54] 2025-11-24 20:27:48,626 [wrapper] Pilot exit status: 0
[2025-11-24 21:27:54] 2025-11-24 20:27:48,990 [wrapper] pandaids: 6893852224
[2025-11-24 21:27:54] 2025-11-24 20:27:50,150 [wrapper] cleanup supervisor_pilot 22732 5703
[2025-11-24 21:27:54] 2025-11-24 20:27:50,238 [wrapper] Test setup, not cleaning
[2025-11-24 21:27:54] 2025-11-24 20:27:50,320 [wrapper] apfmon messages muted
[2025-11-24 21:27:54] 2025-11-24 20:27:50,399 [wrapper] ==== wrapper stdout END ====
[2025-11-24 21:27:54] 2025-11-24 20:27:50,478 [wrapper] ==== wrapper stderr END ====
[2025-11-24 21:27:54]  *** Error codes and diagnostics ***
[2025-11-24 21:27:54]     "exeErrorCode": 0,
[2025-11-24 21:27:54]     "exeErrorDiag": "",
[2025-11-24 21:27:54]     "pilotErrorCode": 0,
[2025-11-24 21:27:54]     "pilotErrorDiag": "",
[2025-11-24 21:27:54]  *** Listing of results directory ***
[2025-11-24 21:27:54] total 1320472
[2025-11-24 21:27:54] -rw-r--r--. 1 boinc boinc    576529 Nov 20 12:09 pilot3.tar.gz
[2025-11-24 21:27:54] -rw-r--r--. 1 boinc boinc      5112 Nov 20 12:49 queuedata.json
[2025-11-24 21:27:54] -rwx------. 1 boinc boinc     36292 Nov 20 12:50 runpilot2-wrapper.sh
[2025-11-24 21:27:54] -rw-r--r--. 1 boinc boinc       100 Nov 24 00:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 21:27:54] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 00:38 run_atlas
[2025-11-24 21:27:54] -rw-r--r--. 1 boinc boinc       105 Nov 24 00:38 job.xml
[2025-11-24 21:27:54] -rw-r--r--. 2 boinc boinc 409606263 Nov 24 00:38 EVNT.47493127._000371.pool.root.1
[2025-11-24 21:27:54] -rw-r--r--. 1 boinc boinc      6392 Nov 24 00:38 init_data.xml
[2025-11-24 21:27:54] -rw-r--r--. 2 boinc boinc     15847 Nov 24 00:38 start_atlas.sh
[2025-11-24 21:27:54] drwxrwx--x. 2 boinc boinc        68 Nov 24 00:38 shared
[2025-11-24 21:27:54] -rw-r--r--. 2 boinc boinc    590102 Nov 24 00:38 input.tar.gz
[2025-11-24 21:27:54] -rw-r--r--. 1 boinc boinc         0 Nov 24 00:38 boinc_lockfile
[2025-11-24 21:27:54] -rw-r--r--. 1 boinc boinc      2786 Nov 24 00:38 pandaJob.out
[2025-11-24 21:27:54] -rw-------. 1 boinc boinc    989786 Nov 24 00:42 agis_schedconf.cvmfs.json
[2025-11-24 21:27:54] drwx------. 5 boinc boinc      4096 Nov 24 00:42 pilot3
[2025-11-24 21:27:54] -rw-r--r--. 1 boinc boinc       533 Nov 24 20:55 boinc_task_state.xml
[2025-11-24 21:27:54] -rw-------. 1 boinc boinc 914092384 Nov 24 21:23 HITS.47523449._003709.pool.root.1
[2025-11-24 21:27:54] -rw-------. 1 boinc boinc      1032 Nov 24 21:24 memory_monitor_summary.json
[2025-11-24 21:27:54] -rw-------. 1 boinc boinc   1516227 Nov 24 21:24 agis_ddmendpoints.agis.ALL.json
[2025-11-24 21:27:54] -rw-------. 1 boinc boinc   2351139 Nov 24 21:24 log.47523449._003709.job.log.tgz.1
[2025-11-24 21:27:54] -rw-------. 1 boinc boinc        95 Nov 24 21:26 pilot_heartbeat.json
[2025-11-24 21:27:54] -rw-------. 1 boinc boinc      7949 Nov 24 21:26 heartbeat.json
[2025-11-24 21:27:54] -rw-------. 1 boinc boinc      4883 Nov 24 21:27 pilotlog.txt
[2025-11-24 21:27:54] -rw-------. 1 boinc boinc   9931191 Nov 24 21:27 log.47523449._003709.job.log.1
[2025-11-24 21:27:54] -rw-------. 1 boinc boinc       353 Nov 24 21:27 output.list
[2025-11-24 21:27:54] -rw-r--r--. 1 boinc boinc       620 Nov 24 21:27 runtime_log
[2025-11-24 21:27:54] -rw-------. 1 boinc boinc  12298240 Nov 24 21:27 result.tar.gz
[2025-11-24 21:27:54] -rw-r--r--. 1 boinc boinc      8192 Nov 24 21:27 boinc_mmap_file
[2025-11-24 21:27:54] -rw-------. 1 boinc boinc       661 Nov 24 21:27 ybNKDmQMIg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7fHKDmhcUiJm.diag
[2025-11-24 21:27:54] -rw-r--r--. 1 boinc boinc      8817 Nov 24 21:27 runtime_log.err
[2025-11-24 21:27:54] -rw-r--r--. 1 boinc boinc        29 Nov 24 21:27 wrapper_checkpoint.txt
[2025-11-24 21:27:54] -rw-r--r--. 1 boinc boinc     21507 Nov 24 21:27 stderr.txt
[2025-11-24 21:27:54] HITS file was successfully produced:
[2025-11-24 21:27:54] -rw-------. 1 boinc boinc 914092384 Nov 24 21:23 shared/HITS.pool.root.1
[2025-11-24 21:27:54]  *** Contents of shared directory: ***
[2025-11-24 21:27:54] total 1305288
[2025-11-24 21:27:54] -rw-r--r--. 2 boinc boinc 409606263 Nov 24 00:38 ATLAS.root_0
[2025-11-24 21:27:54] -rw-r--r--. 2 boinc boinc     15847 Nov 24 00:38 start_atlas.sh
[2025-11-24 21:27:54] -rw-r--r--. 2 boinc boinc    590102 Nov 24 00:38 input.tar.gz
[2025-11-24 21:27:54] -rw-------. 1 boinc boinc 914092384 Nov 24 21:23 HITS.pool.root.1
[2025-11-24 21:27:54] -rw-------. 1 boinc boinc  12298240 Nov 24 21:27 result.tar.gz
21:27:55 (1905): run_atlas exited; CPU time 336997.583395
21:27:55 (1905): called boinc_finish(0)

</stderr_txt>
]]>

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