Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<message>
process exited with code 195 (0xc3, -61)</message>
<stderr_txt>
apptainer exec -B /cvmfs,/scratch/boinc/var/slot76/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 21:12:59] Job failed
[2025-11-22 21:12:59] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot76/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-11-22 21:12:59] ++ pwd
[2025-11-22 21:12:59] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot76/slots/1/
[2025-11-22 21:12:59] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot76/slots/1/
[2025-11-22 21:12:59] + mv ATLAS.root_0 EVNT.47493127._000603.pool.root.1
[2025-11-22 21:12:59] mv: 'ATLAS.root_0' and 'EVNT.47493127._000603.pool.root.1' are the same file
[2025-11-22 21:12:59] + tar --strip-components=5 -xvf input.tar.gz
[2025-11-22 21:12:59] + umask 077
[2025-11-22 21:12:59] ++ date +%s
[2025-11-22 21:12:59] + ACCOUNTING_STARTTIME=1763841532
[2025-11-22 21:12:59] + echo 'Detecting resource accounting method available for the job.'
[2025-11-22 21:12:59] Detecting resource accounting method available for the job.
[2025-11-22 21:12:59] + JOB_ACCOUNTING=
[2025-11-22 21:12:59] + command -v arc-job-cgroup
[2025-11-22 21:12:59] + '[' -z '' ']'
[2025-11-22 21:12:59] + GNU_TIME=/usr/bin/time
[2025-11-22 21:12:59] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-11-22 21:12:59] Looking for /usr/bin/time tool for accounting measurements
[2025-11-22 21:12:59] + '[' '!' -z /usr/bin/time ']'
[2025-11-22 21:12:59] + /usr/bin/time --version
[2025-11-22 21:12:59] + echo 'GNU time found and will be used for job accounting.'
[2025-11-22 21:12:59] GNU time found and will be used for job accounting.
[2025-11-22 21:12:59] + JOB_ACCOUNTING=gnutime
[2025-11-22 21:12:59] + '[' -z gnutime ']'
[2025-11-22 21:12:59] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-11-22 21:12:59] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-11-22 21:12:59] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-11-20/BOINC_MCORE/6893864204.out
[2025-11-22 21:12:59] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-11-20/BOINC_MCORE/6893864204.out
[2025-11-22 21:12:59] + export PILOT_NOKILL=YES
[2025-11-22 21:12:59] + PILOT_NOKILL=YES
[2025-11-22 21:12:59] + export GRID_GLOBAL_JOBID=7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn
[2025-11-22 21:12:59] + GRID_GLOBAL_JOBID=7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn
[2025-11-22 21:12:59] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn
[2025-11-22 21:12:59] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn
[2025-11-22 21:12:59] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-11-22 21:12:59] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-11-22 21:12:59] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-11-22 21:12:59] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-11-22 21:12:59] ++ pwd
[2025-11-22 21:12:59] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot76/slots/1
[2025-11-22 21:12:59] + RUNTIME_JOB_STDIN=/dev/null
[2025-11-22 21:12:59] ++ pwd
[2025-11-22 21:12:59] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot76/slots/1/log.47523449._006025.job.log.1
[2025-11-22 21:12:59] ++ pwd
[2025-11-22 21:12:59] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot76/slots/1/log.47523449._006025.job.log.1
[2025-11-22 21:12:59] ++ pwd
[2025-11-22 21:12:59] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot76/slots/1.diag
[2025-11-22 21:12:59] + '[' '!' -z '' ']'
[2025-11-22 21:12:59] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-11-22 21:12:59] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-11-22 21:12:59] + RUNTIME_FRONTEND_SEES_NODE=
[2025-11-22 21:12:59] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-11-22 21:12:59] + '[' '!' -z '' ']'
[2025-11-22 21:12:59] + '[' -z yes ']'
[2025-11-22 21:12:59] ++ pwd
[2025-11-22 21:12:59] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot76/slots/1/7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn.diag
[2025-11-22 21:12:59] + runtimeenvironments=
[2025-11-22 21:12:59] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-11-22 21:12:59] + RTE_function_0 1
[2025-11-22 21:12:59] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-11-22 21:12:59] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-11-22 21:12:59] + export BOINC_APP=ATLAS
[2025-11-22 21:12:59] + BOINC_APP=ATLAS
[2025-11-22 21:12:59] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-11-22 21:12:59] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-11-22 21:12:59] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-11-22 21:12:59] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-11-22 21:12:59] + '[' -z 1 ']'
[2025-11-22 21:12:59] + '[' 1 == 1 ']'
[2025-11-22 21:12:59] + shift
[2025-11-22 21:12:59] + export SITE_NAME=BOINC
[2025-11-22 21:12:59] + SITE_NAME=BOINC
[2025-11-22 21:12:59] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot76/slots/1/
[2025-11-22 21:12:59] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot76/slots/1/
[2025-11-22 21:12:59] + '[' -e /scratch/boinc/var/slot76/slots/1/init_data.xml ']'
[2025-11-22 21:12:59] + grep '<use_http_proxy/>' /scratch/boinc/var/slot76/slots/1/init_data.xml
[2025-11-22 21:12:59] + '[' 0 -ne 0 ']'
[2025-11-22 21:12:59] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-11-22 21:12:59] + '[' -f /etc/os-release ']'
[2025-11-22 21:12:59] +++ cat /etc/os-release
[2025-11-22 21:12:59] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-11-22 21:12:59] +++ NAME='CentOS Linux'
[2025-11-22 21:12:59] +++ VERSION='7 (Core)'
[2025-11-22 21:12:59] +++ ID=centos
[2025-11-22 21:12:59] +++ ID_LIKE='rhel fedora'
[2025-11-22 21:12:59] +++ VERSION_ID=7
[2025-11-22 21:12:59] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-11-22 21:12:59] +++ ANSI_COLOR='0;31'
[2025-11-22 21:12:59] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-11-22 21:12:59] +++ HOME_URL=https://www.centos.org/
[2025-11-22 21:12:59] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-11-22 21:12:59] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-11-22 21:12:59] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-11-22 21:12:59] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-11-22 21:12:59] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-11-22 21:12:59] ++ echo 'CentOS Linux 7 (Core)'
[2025-11-22 21:12:59] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-11-22 21:12:59] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-11-22 21:12:59] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-11-22 21:12:59] + HOME=/scratch/boinc/var/slot76/slots/1
[2025-11-22 21:12:59] + export HOME
[2025-11-22 21:12:59] + cd /scratch/boinc/var/slot76/slots/1
[2025-11-22 21:12:59] + '[' '!' -z '' ']'
[2025-11-22 21:12:59] + '[' -z '' ']'
[2025-11-22 21:12:59] ++ /bin/hostname -f
[2025-11-22 21:12:59] + nodename=skurut10.grid.cesnet.cz
[2025-11-22 21:12:59] + echo nodename=skurut10.grid.cesnet.cz
[2025-11-22 21:12:59] + echo Processors=2
[2025-11-22 21:12:59] + echo Nodecount=1
[2025-11-22 21:12:59] + echo Benchmark=HEPSPEC:1.0
[2025-11-22 21:12:59] + executable=./runpilot2-wrapper.sh
[2025-11-22 21:12:59] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-11-22 21:12:59] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-11-22 21:12:59] ++ head -n 1
[2025-11-22 21:12:59] ++ tr -d '\0'
[2025-11-22 21:12:59] + line1='#!/bin/bash'
[2025-11-22 21:12:59] ++ echo '#!/bin/bash'
[2025-11-22 21:12:59] ++ sed -n 's/^#! *//p'
[2025-11-22 21:12:59] + shebang=/bin/bash
[2025-11-22 21:12:59] ++ echo /bin/bash
[2025-11-22 21:12:59] ++ awk '{print $1}'
[2025-11-22 21:12:59] + interpreter=/bin/bash
[2025-11-22 21:12:59] + '[' /bin/bash = /usr/bin/env ']'
[2025-11-22 21:12:59] + '[' x/bin/bash = x ']'
[2025-11-22 21:12:59] + type /bin/bash
[2025-11-22 21:12:59] + '[' xgnutime = xgnutime ']'
[2025-11-22 21:12:59] + /usr/bin/time -o /scratch/boinc/var/slot76/slots/1/7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.11.1.15 -z -t --piloturl local --mute --container
[2025-11-22 21:12:59] + RESULT=2
[2025-11-22 21:12:59] + sed -i -e /nodename=/d /scratch/boinc/var/slot76/slots/1/7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn.diag
[2025-11-22 21:12:59] ++ grep domain_name init_data.xml
[2025-11-22 21:12:59] ++ awk -F '>' '{print $2}'
[2025-11-22 21:12:59] ++ awk -F '<' '{print $1}'
[2025-11-22 21:12:59] ++ sed -e 's# #_#g'
[2025-11-22 21:12:59] + hostname=skurut10.grid.cesnet.cz
[2025-11-22 21:12:59] ++ grep user_name init_data.xml
[2025-11-22 21:12:59] ++ awk -F '>' '{print $2}'
[2025-11-22 21:12:59] ++ awk -F '<' '{print $1}'
[2025-11-22 21:12:59] ++ sed -e 's# #_#g'
[2025-11-22 21:12:59] + username=praguelcg2
[2025-11-22 21:12:59] + nodename=praguelcg2@skurut10.grid.cesnet.cz
[2025-11-22 21:12:59] + echo nodename=praguelcg2@skurut10.grid.cesnet.cz
[2025-11-22 21:12:59] + '[' -n 4 ']'
[2025-11-22 21:12:59] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot76/slots/1/7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn.diag
[2025-11-22 21:12:59] + echo exitcode=2
[2025-11-22 21:12:59] + runtimeenvironments=
[2025-11-22 21:12:59] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-11-22 21:12:59] + RTE_function_0 2
[2025-11-22 21:12:59] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-11-22 21:12:59] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-11-22 21:12:59] + export BOINC_APP=ATLAS
[2025-11-22 21:12:59] + BOINC_APP=ATLAS
[2025-11-22 21:12:59] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-11-22 21:12:59] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-11-22 21:12:59] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-11-22 21:12:59] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-11-22 21:12:59] + '[' -z 2 ']'
[2025-11-22 21:12:59] + '[' 2 == 1 ']'
[2025-11-22 21:12:59] + '[' 0 -ne 0 ']'
[2025-11-22 21:12:59] + echo 'zip all output files'
[2025-11-22 21:12:59] + flist='*.diag '
[2025-11-22 21:12:59] + for f in ./heartbeat.json ./output.list ./log.47523449._006025.job.log.1 ./log.47523449._006025.job.log.1 ./gmlog/
[2025-11-22 21:12:59] + '[' -e ./heartbeat.json ']'
[2025-11-22 21:12:59] + flist='*.diag  ./heartbeat.json'
[2025-11-22 21:12:59] + for f in ./heartbeat.json ./output.list ./log.47523449._006025.job.log.1 ./log.47523449._006025.job.log.1 ./gmlog/
[2025-11-22 21:12:59] + '[' -e ./output.list ']'
[2025-11-22 21:12:59] + for f in ./heartbeat.json ./output.list ./log.47523449._006025.job.log.1 ./log.47523449._006025.job.log.1 ./gmlog/
[2025-11-22 21:12:59] + '[' -e ./log.47523449._006025.job.log.1 ']'
[2025-11-22 21:12:59] + flist='*.diag  ./heartbeat.json ./log.47523449._006025.job.log.1'
[2025-11-22 21:12:59] + for f in ./heartbeat.json ./output.list ./log.47523449._006025.job.log.1 ./log.47523449._006025.job.log.1 ./gmlog/
[2025-11-22 21:12:59] + '[' -e ./log.47523449._006025.job.log.1 ']'
[2025-11-22 21:12:59] + flist='*.diag  ./heartbeat.json ./log.47523449._006025.job.log.1 ./log.47523449._006025.job.log.1'
[2025-11-22 21:12:59] + for f in ./heartbeat.json ./output.list ./log.47523449._006025.job.log.1 ./log.47523449._006025.job.log.1 ./gmlog/
[2025-11-22 21:12:59] + '[' -e ./gmlog/ ']'
[2025-11-22 21:12:59] + '[' -f output.list ']'
[2025-11-22 21:12:59] + tar cvf result.tar.gz 7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn.diag ./heartbeat.json ./log.47523449._006025.job.log.1 ./log.47523449._006025.job.log.1
[2025-11-22 21:12:59] + '[' xgnutime = xcgroup ']'
[2025-11-22 21:12:59] + '[' -n '' ']'
[2025-11-22 21:12:59] + '[' -n '' ']'
[2025-11-22 21:12:59] ++ date +%s
[2025-11-22 21:12:59] + ACCOUNTING_ENDTIME=1763841724
[2025-11-22 21:12:59] ++ date -d '1970-01-01 UTC 1763841532 seconds' +%Y%m%d%H%M%SZ
[2025-11-22 21:12:59] + echo LRMSStartTime=20251122205852Z
[2025-11-22 21:12:59] ++ date -d '1970-01-01 UTC 1763841724 seconds' +%Y%m%d%H%M%SZ
[2025-11-22 21:12:59] + echo LRMSEndTime=20251122210204Z
[2025-11-22 21:12:59] + echo walltime=192
[2025-11-22 21:12:59] + echo exitcode=2
[2025-11-22 21:12:59] + exit 2
[2025-11-22 21:12:59] ./pilotlog.txt
[2025-11-22 21:12:59] ./runtime_log
[2025-11-22 21:12:59] ./log.47523449._006025.job.log.1
[2025-11-22 21:12:59] ./runtime_log.err
[2025-11-22 21:12:59] ./pilot3/pilot/util/realtimelogger.py
[2025-11-22 21:12:59] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-11-22 21:12:59] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-11-22 21:12:59] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-11-22 21:12:59] ./pilot3/pilot/util/loggingsupport.py
[2025-11-22 21:12:59] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-11-22 21:12:59] ./PanDA_Pilot-6893864204/pilotlog.txt
[2025-11-22 21:12:59] ./PanDA_Pilot-6893864204/log.EVNTtoHITS
[2025-11-22 21:12:59] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/worker_3/AthenaMP.log
[2025-11-22 21:12:59] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/worker_3/PoolFileCatalog.xml.BAK
[2025-11-22 21:12:59] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/worker_3/PoolFileCatalog.xml
[2025-11-22 21:12:59] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/evt_counter/AthenaMP.log
[2025-11-22 21:12:59] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/evt_counter/PoolFileCatalog.xml.BAK
[2025-11-22 21:12:59] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/evt_counter/PoolFileCatalog.xml
[2025-11-22 21:12:59] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/worker_2/AthenaMP.log
[2025-11-22 21:12:59] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/worker_2/PoolFileCatalog.xml.BAK
[2025-11-22 21:12:59] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/worker_2/PoolFileCatalog.xml
[2025-11-22 21:12:59] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/worker_1/AthenaMP.log
[2025-11-22 21:12:59] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/worker_1/PoolFileCatalog.xml.BAK
[2025-11-22 21:12:59] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/worker_1/PoolFileCatalog.xml
[2025-11-22 21:12:59] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/worker_0/AthenaMP.log
[2025-11-22 21:12:59] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/worker_0/PoolFileCatalog.xml.BAK
[2025-11-22 21:12:59] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/worker_0/PoolFileCatalog.xml
[2025-11-22 21:12:59] ./PanDA_Pilot-6893864204/PoolFileCatalog.xml.AthenaMP-saved
[2025-11-22 21:12:59] ./PanDA_Pilot-6893864204/PoolFileCatalog.xml.BAK
[2025-11-22 21:12:59] ./PanDA_Pilot-6893864204/PoolFileCatalog.xml
[2025-11-22 21:12:59] ./PanDA_Pilot-6893864204/prmon.log
[2025-11-22 21:12:59] ./log.47523449._006025.job.log.tgz.1
16:04:26 (4028237): wrapper (7.7.26015): starting
16:04:26 (4028237): wrapper: running run_atlas (--nthreads 4)
[2025-11-28 16:04:26] Arguments: --nthreads 4
[2025-11-28 16:04:26] Threads: 4
[2025-11-28 16:04:26] This job has been restarted, cleaning up previous attempt
[2025-11-28 16:04:26] Checking for CVMFS
[2025-11-28 16:04:26] No cvmfs_config command found, will try listing directly
[2025-11-28 16:04:26] CVMFS is ok
[2025-11-28 16:04:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 16:04:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 16:04:26] Further information can be found at the LHC@home message board.
[2025-11-28 16:04:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 16:04:26] Checking for apptainer binary...
[2025-11-28 16:04:26] which: no apptainer in ((null))
[2025-11-28 16:04:26] apptainer is not installed, using version from CVMFS
[2025-11-28 16:04:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 16:04:27] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot76/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-11-28 16:04:27] apptainer works
[2025-11-28 16:04:27] Set ATHENA_PROC_NUMBER=4
[2025-11-28 16:04:27] Set ATHENA_CORE_NUMBER=4
[2025-11-28 16:04:27] Starting ATLAS job with PandaID=6893864204
[2025-11-28 16:04:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot76/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 16:07:48] Job failed
[2025-11-28 16:07:48] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot76/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-11-28 16:07:48] ++ pwd
[2025-11-28 16:07:48] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot76/slots/1/
[2025-11-28 16:07:48] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot76/slots/1/
[2025-11-28 16:07:48] + mv ATLAS.root_0 EVNT.47493127._000603.pool.root.1
[2025-11-28 16:07:48] mv: 'ATLAS.root_0' and 'EVNT.47493127._000603.pool.root.1' are the same file
[2025-11-28 16:07:48] + tar --strip-components=5 -xvf input.tar.gz
[2025-11-28 16:07:48] + umask 077
[2025-11-28 16:07:48] ++ date +%s
[2025-11-28 16:07:48] + ACCOUNTING_STARTTIME=1764342267
[2025-11-28 16:07:48] + echo 'Detecting resource accounting method available for the job.'
[2025-11-28 16:07:48] Detecting resource accounting method available for the job.
[2025-11-28 16:07:48] + JOB_ACCOUNTING=
[2025-11-28 16:07:48] + command -v arc-job-cgroup
[2025-11-28 16:07:48] + '[' -z '' ']'
[2025-11-28 16:07:48] + GNU_TIME=/usr/bin/time
[2025-11-28 16:07:48] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-11-28 16:07:48] Looking for /usr/bin/time tool for accounting measurements
[2025-11-28 16:07:48] + '[' '!' -z /usr/bin/time ']'
[2025-11-28 16:07:48] + /usr/bin/time --version
[2025-11-28 16:07:48] + echo 'GNU time found and will be used for job accounting.'
[2025-11-28 16:07:48] GNU time found and will be used for job accounting.
[2025-11-28 16:07:48] + JOB_ACCOUNTING=gnutime
[2025-11-28 16:07:48] + '[' -z gnutime ']'
[2025-11-28 16:07:48] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-11-28 16:07:48] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-11-28 16:07:48] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-11-20/BOINC_MCORE/6893864204.out
[2025-11-28 16:07:48] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-11-20/BOINC_MCORE/6893864204.out
[2025-11-28 16:07:48] + export PILOT_NOKILL=YES
[2025-11-28 16:07:48] + PILOT_NOKILL=YES
[2025-11-28 16:07:48] + export GRID_GLOBAL_JOBID=7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn
[2025-11-28 16:07:48] + GRID_GLOBAL_JOBID=7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn
[2025-11-28 16:07:48] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn
[2025-11-28 16:07:48] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn
[2025-11-28 16:07:48] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-11-28 16:07:48] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-11-28 16:07:48] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-11-28 16:07:48] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-11-28 16:07:48] ++ pwd
[2025-11-28 16:07:48] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot76/slots/1
[2025-11-28 16:07:48] + RUNTIME_JOB_STDIN=/dev/null
[2025-11-28 16:07:48] ++ pwd
[2025-11-28 16:07:48] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot76/slots/1/log.47523449._006025.job.log.1
[2025-11-28 16:07:48] ++ pwd
[2025-11-28 16:07:48] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot76/slots/1/log.47523449._006025.job.log.1
[2025-11-28 16:07:48] ++ pwd
[2025-11-28 16:07:48] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot76/slots/1.diag
[2025-11-28 16:07:48] + '[' '!' -z '' ']'
[2025-11-28 16:07:48] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-11-28 16:07:48] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-11-28 16:07:48] + RUNTIME_FRONTEND_SEES_NODE=
[2025-11-28 16:07:48] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-11-28 16:07:48] + '[' '!' -z '' ']'
[2025-11-28 16:07:48] + '[' -z yes ']'
[2025-11-28 16:07:48] ++ pwd
[2025-11-28 16:07:48] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot76/slots/1/7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn.diag
[2025-11-28 16:07:48] + runtimeenvironments=
[2025-11-28 16:07:48] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-11-28 16:07:48] + RTE_function_0 1
[2025-11-28 16:07:48] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-11-28 16:07:48] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-11-28 16:07:48] + export BOINC_APP=ATLAS
[2025-11-28 16:07:48] + BOINC_APP=ATLAS
[2025-11-28 16:07:48] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-11-28 16:07:48] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-11-28 16:07:48] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-11-28 16:07:48] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-11-28 16:07:48] + '[' -z 1 ']'
[2025-11-28 16:07:48] + '[' 1 == 1 ']'
[2025-11-28 16:07:48] + shift
[2025-11-28 16:07:48] + export SITE_NAME=BOINC
[2025-11-28 16:07:48] + SITE_NAME=BOINC
[2025-11-28 16:07:48] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot76/slots/1/
[2025-11-28 16:07:48] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot76/slots/1/
[2025-11-28 16:07:48] + '[' -e /scratch/boinc/var/slot76/slots/1/init_data.xml ']'
[2025-11-28 16:07:48] + grep '<use_http_proxy/>' /scratch/boinc/var/slot76/slots/1/init_data.xml
[2025-11-28 16:07:48] + '[' 0 -ne 0 ']'
[2025-11-28 16:07:48] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-11-28 16:07:48] + '[' -f /etc/os-release ']'
[2025-11-28 16:07:48] +++ cat /etc/os-release
[2025-11-28 16:07:48] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-11-28 16:07:48] +++ NAME='CentOS Linux'
[2025-11-28 16:07:48] +++ VERSION='7 (Core)'
[2025-11-28 16:07:48] +++ ID=centos
[2025-11-28 16:07:48] +++ ID_LIKE='rhel fedora'
[2025-11-28 16:07:48] +++ VERSION_ID=7
[2025-11-28 16:07:48] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-11-28 16:07:48] +++ ANSI_COLOR='0;31'
[2025-11-28 16:07:48] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-11-28 16:07:48] +++ HOME_URL=https://www.centos.org/
[2025-11-28 16:07:48] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-11-28 16:07:48] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-11-28 16:07:48] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-11-28 16:07:48] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-11-28 16:07:48] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-11-28 16:07:48] ++ echo 'CentOS Linux 7 (Core)'
[2025-11-28 16:07:48] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-11-28 16:07:48] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-11-28 16:07:48] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-11-28 16:07:48] + HOME=/scratch/boinc/var/slot76/slots/1
[2025-11-28 16:07:48] + export HOME
[2025-11-28 16:07:48] + cd /scratch/boinc/var/slot76/slots/1
[2025-11-28 16:07:48] + '[' '!' -z '' ']'
[2025-11-28 16:07:48] + '[' -z '' ']'
[2025-11-28 16:07:48] ++ /bin/hostname -f
[2025-11-28 16:07:48] + nodename=skurut10.grid.cesnet.cz
[2025-11-28 16:07:48] + echo nodename=skurut10.grid.cesnet.cz
[2025-11-28 16:07:48] + echo Processors=2
[2025-11-28 16:07:48] + echo Nodecount=1
[2025-11-28 16:07:48] + echo Benchmark=HEPSPEC:1.0
[2025-11-28 16:07:48] + executable=./runpilot2-wrapper.sh
[2025-11-28 16:07:48] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-11-28 16:07:48] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-11-28 16:07:48] ++ head -n 1
[2025-11-28 16:07:48] ++ tr -d '\0'
[2025-11-28 16:07:48] + line1='#!/bin/bash'
[2025-11-28 16:07:48] ++ echo '#!/bin/bash'
[2025-11-28 16:07:48] ++ sed -n 's/^#! *//p'
[2025-11-28 16:07:48] + shebang=/bin/bash
[2025-11-28 16:07:48] ++ echo /bin/bash
[2025-11-28 16:07:48] ++ awk '{print $1}'
[2025-11-28 16:07:48] + interpreter=/bin/bash
[2025-11-28 16:07:48] + '[' /bin/bash = /usr/bin/env ']'
[2025-11-28 16:07:48] + '[' x/bin/bash = x ']'
[2025-11-28 16:07:48] + type /bin/bash
[2025-11-28 16:07:48] + '[' xgnutime = xgnutime ']'
[2025-11-28 16:07:48] + /usr/bin/time -o /scratch/boinc/var/slot76/slots/1/7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.11.1.15 -z -t --piloturl local --mute --container
[2025-11-28 16:07:48] + RESULT=2
[2025-11-28 16:07:48] + sed -i -e /nodename=/d /scratch/boinc/var/slot76/slots/1/7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn.diag
[2025-11-28 16:07:48] ++ grep domain_name init_data.xml
[2025-11-28 16:07:48] ++ awk -F '>' '{print $2}'
[2025-11-28 16:07:48] ++ awk -F '<' '{print $1}'
[2025-11-28 16:07:48] ++ sed -e 's# #_#g'
[2025-11-28 16:07:48] + hostname=skurut10.grid.cesnet.cz
[2025-11-28 16:07:48] ++ grep user_name init_data.xml
[2025-11-28 16:07:48] ++ awk -F '>' '{print $2}'
[2025-11-28 16:07:48] ++ awk -F '<' '{print $1}'
[2025-11-28 16:07:48] ++ sed -e 's# #_#g'
[2025-11-28 16:07:48] + username=praguelcg2
[2025-11-28 16:07:48] + nodename=praguelcg2@skurut10.grid.cesnet.cz
[2025-11-28 16:07:48] + echo nodename=praguelcg2@skurut10.grid.cesnet.cz
[2025-11-28 16:07:48] + '[' -n 4 ']'
[2025-11-28 16:07:48] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot76/slots/1/7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn.diag
[2025-11-28 16:07:48] + echo exitcode=2
[2025-11-28 16:07:48] + runtimeenvironments=
[2025-11-28 16:07:48] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-11-28 16:07:48] + RTE_function_0 2
[2025-11-28 16:07:48] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-11-28 16:07:48] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-11-28 16:07:48] + export BOINC_APP=ATLAS
[2025-11-28 16:07:48] + BOINC_APP=ATLAS
[2025-11-28 16:07:48] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-11-28 16:07:48] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-11-28 16:07:48] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-11-28 16:07:48] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-11-28 16:07:48] + '[' -z 2 ']'
[2025-11-28 16:07:48] + '[' 2 == 1 ']'
[2025-11-28 16:07:48] + '[' 0 -ne 0 ']'
[2025-11-28 16:07:48] + echo 'zip all output files'
[2025-11-28 16:07:48] + flist='*.diag '
[2025-11-28 16:07:48] + for f in ./heartbeat.json ./output.list ./log.47523449._006025.job.log.1 ./log.47523449._006025.job.log.1 ./gmlog/
[2025-11-28 16:07:48] + '[' -e ./heartbeat.json ']'
[2025-11-28 16:07:48] + flist='*.diag  ./heartbeat.json'
[2025-11-28 16:07:48] + for f in ./heartbeat.json ./output.list ./log.47523449._006025.job.log.1 ./log.47523449._006025.job.log.1 ./gmlog/
[2025-11-28 16:07:48] + '[' -e ./output.list ']'
[2025-11-28 16:07:48] + for f in ./heartbeat.json ./output.list ./log.47523449._006025.job.log.1 ./log.47523449._006025.job.log.1 ./gmlog/
[2025-11-28 16:07:48] + '[' -e ./log.47523449._006025.job.log.1 ']'
[2025-11-28 16:07:48] + flist='*.diag  ./heartbeat.json ./log.47523449._006025.job.log.1'
[2025-11-28 16:07:48] + for f in ./heartbeat.json ./output.list ./log.47523449._006025.job.log.1 ./log.47523449._006025.job.log.1 ./gmlog/
[2025-11-28 16:07:48] + '[' -e ./log.47523449._006025.job.log.1 ']'
[2025-11-28 16:07:48] + flist='*.diag  ./heartbeat.json ./log.47523449._006025.job.log.1 ./log.47523449._006025.job.log.1'
[2025-11-28 16:07:48] + for f in ./heartbeat.json ./output.list ./log.47523449._006025.job.log.1 ./log.47523449._006025.job.log.1 ./gmlog/
[2025-11-28 16:07:48] + '[' -e ./gmlog/ ']'
[2025-11-28 16:07:48] + '[' -f output.list ']'
[2025-11-28 16:07:48] + tar cvf result.tar.gz 7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn.diag ./heartbeat.json ./log.47523449._006025.job.log.1 ./log.47523449._006025.job.log.1
[2025-11-28 16:07:48] + '[' xgnutime = xcgroup ']'
[2025-11-28 16:07:48] + '[' -n '' ']'
[2025-11-28 16:07:48] + '[' -n '' ']'
[2025-11-28 16:07:48] ++ date +%s
[2025-11-28 16:07:48] + ACCOUNTING_ENDTIME=1764342462
[2025-11-28 16:07:48] ++ date -d '1970-01-01 UTC 1764342267 seconds' +%Y%m%d%H%M%SZ
[2025-11-28 16:07:48] + echo LRMSStartTime=20251128160427Z
[2025-11-28 16:07:48] ++ date -d '1970-01-01 UTC 1764342462 seconds' +%Y%m%d%H%M%SZ
[2025-11-28 16:07:48] + echo LRMSEndTime=20251128160742Z
[2025-11-28 16:07:48] + echo walltime=195
[2025-11-28 16:07:48] + echo exitcode=2
[2025-11-28 16:07:48] + exit 2
[2025-11-28 16:07:48] ./pilotlog.txt
[2025-11-28 16:07:48] ./runtime_log
[2025-11-28 16:07:48] ./log.47523449._006025.job.log.1
[2025-11-28 16:07:48] ./runtime_log.err
[2025-11-28 16:07:48] ./pilot3/pilot/util/realtimelogger.py
[2025-11-28 16:07:48] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-11-28 16:07:48] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-11-28 16:07:48] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-11-28 16:07:48] ./pilot3/pilot/util/loggingsupport.py
[2025-11-28 16:07:48] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-11-28 16:07:48] ./PanDA_Pilot-6893864204/pilotlog.txt
[2025-11-28 16:07:48] ./PanDA_Pilot-6893864204/log.EVNTtoHITS
[2025-11-28 16:07:48] ./PanDA_Pilot-6893864204/PoolFileCatalog.xml.AthenaMP-saved
[2025-11-28 16:07:48] ./PanDA_Pilot-6893864204/PoolFileCatalog.xml.BAK
[2025-11-28 16:07:48] ./PanDA_Pilot-6893864204/PoolFileCatalog.xml
[2025-11-28 16:07:48] ./PanDA_Pilot-6893864204/prmon.log
[2025-11-28 16:07:48] ./log.47523449._006025.job.log.tgz.1
18:08:35 (677527): wrapper (7.7.26015): starting
18:08:35 (677527): wrapper: running run_atlas (--nthreads 4)
[2025-12-02 18:08:35] Arguments: --nthreads 4
[2025-12-02 18:08:35] Threads: 4
[2025-12-02 18:08:35] This job has been restarted, cleaning up previous attempt
[2025-12-02 18:08:35] Checking for CVMFS
[2025-12-02 18:08:35] No cvmfs_config command found, will try listing directly
[2025-12-02 18:08:35] CVMFS is ok
[2025-12-02 18:08:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 18:08:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 18:08:35] Further information can be found at the LHC@home message board.
[2025-12-02 18:08:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 18:08:35] Checking for apptainer binary...
[2025-12-02 18:08:35] which: no apptainer in ((null))
[2025-12-02 18:08:35] apptainer is not installed, using version from CVMFS
[2025-12-02 18:08:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 18:08:36] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot76/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-12-02 18:08:36] apptainer works
[2025-12-02 18:08:36] Set ATHENA_PROC_NUMBER=4
[2025-12-02 18:08:36] Set ATHENA_CORE_NUMBER=4
[2025-12-02 18:08:36] Starting ATLAS job with PandaID=6893864204
[2025-12-02 18:08:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot76/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 18:11:57] Job failed
[2025-12-02 18:11:57] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot76/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-12-02 18:11:57] ++ pwd
[2025-12-02 18:11:57] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot76/slots/1/
[2025-12-02 18:11:57] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot76/slots/1/
[2025-12-02 18:11:57] + mv ATLAS.root_0 EVNT.47493127._000603.pool.root.1
[2025-12-02 18:11:57] mv: 'ATLAS.root_0' and 'EVNT.47493127._000603.pool.root.1' are the same file
[2025-12-02 18:11:57] + tar --strip-components=5 -xvf input.tar.gz
[2025-12-02 18:11:57] + umask 077
[2025-12-02 18:11:57] ++ date +%s
[2025-12-02 18:11:57] + ACCOUNTING_STARTTIME=1764695316
[2025-12-02 18:11:57] + echo 'Detecting resource accounting method available for the job.'
[2025-12-02 18:11:57] Detecting resource accounting method available for the job.
[2025-12-02 18:11:57] + JOB_ACCOUNTING=
[2025-12-02 18:11:57] + command -v arc-job-cgroup
[2025-12-02 18:11:57] + '[' -z '' ']'
[2025-12-02 18:11:57] + GNU_TIME=/usr/bin/time
[2025-12-02 18:11:57] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-12-02 18:11:57] Looking for /usr/bin/time tool for accounting measurements
[2025-12-02 18:11:57] + '[' '!' -z /usr/bin/time ']'
[2025-12-02 18:11:57] + /usr/bin/time --version
[2025-12-02 18:11:57] + echo 'GNU time found and will be used for job accounting.'
[2025-12-02 18:11:57] GNU time found and will be used for job accounting.
[2025-12-02 18:11:57] + JOB_ACCOUNTING=gnutime
[2025-12-02 18:11:57] + '[' -z gnutime ']'
[2025-12-02 18:11:57] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-12-02 18:11:57] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-12-02 18:11:57] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-11-20/BOINC_MCORE/6893864204.out
[2025-12-02 18:11:57] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-11-20/BOINC_MCORE/6893864204.out
[2025-12-02 18:11:57] + export PILOT_NOKILL=YES
[2025-12-02 18:11:57] + PILOT_NOKILL=YES
[2025-12-02 18:11:57] + export GRID_GLOBAL_JOBID=7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn
[2025-12-02 18:11:57] + GRID_GLOBAL_JOBID=7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn
[2025-12-02 18:11:57] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn
[2025-12-02 18:11:57] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn
[2025-12-02 18:11:57] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-12-02 18:11:57] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-12-02 18:11:57] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-12-02 18:11:57] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-12-02 18:11:57] ++ pwd
[2025-12-02 18:11:57] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot76/slots/1
[2025-12-02 18:11:57] + RUNTIME_JOB_STDIN=/dev/null
[2025-12-02 18:11:57] ++ pwd
[2025-12-02 18:11:57] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot76/slots/1/log.47523449._006025.job.log.1
[2025-12-02 18:11:57] ++ pwd
[2025-12-02 18:11:57] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot76/slots/1/log.47523449._006025.job.log.1
[2025-12-02 18:11:57] ++ pwd
[2025-12-02 18:11:57] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot76/slots/1.diag
[2025-12-02 18:11:57] + '[' '!' -z '' ']'
[2025-12-02 18:11:57] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-12-02 18:11:57] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-12-02 18:11:57] + RUNTIME_FRONTEND_SEES_NODE=
[2025-12-02 18:11:57] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-12-02 18:11:57] + '[' '!' -z '' ']'
[2025-12-02 18:11:57] + '[' -z yes ']'
[2025-12-02 18:11:57] ++ pwd
[2025-12-02 18:11:57] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot76/slots/1/7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn.diag
[2025-12-02 18:11:57] + runtimeenvironments=
[2025-12-02 18:11:57] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-12-02 18:11:57] + RTE_function_0 1
[2025-12-02 18:11:57] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-12-02 18:11:57] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-12-02 18:11:57] + export BOINC_APP=ATLAS
[2025-12-02 18:11:57] + BOINC_APP=ATLAS
[2025-12-02 18:11:57] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-12-02 18:11:57] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-12-02 18:11:57] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-12-02 18:11:57] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-12-02 18:11:57] + '[' -z 1 ']'
[2025-12-02 18:11:57] + '[' 1 == 1 ']'
[2025-12-02 18:11:57] + shift
[2025-12-02 18:11:57] + export SITE_NAME=BOINC
[2025-12-02 18:11:57] + SITE_NAME=BOINC
[2025-12-02 18:11:57] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot76/slots/1/
[2025-12-02 18:11:57] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot76/slots/1/
[2025-12-02 18:11:57] + '[' -e /scratch/boinc/var/slot76/slots/1/init_data.xml ']'
[2025-12-02 18:11:57] + grep '<use_http_proxy/>' /scratch/boinc/var/slot76/slots/1/init_data.xml
[2025-12-02 18:11:57] + '[' 0 -ne 0 ']'
[2025-12-02 18:11:57] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-12-02 18:11:57] + '[' -f /etc/os-release ']'
[2025-12-02 18:11:57] +++ cat /etc/os-release
[2025-12-02 18:11:57] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-12-02 18:11:57] +++ NAME='CentOS Linux'
[2025-12-02 18:11:57] +++ VERSION='7 (Core)'
[2025-12-02 18:11:57] +++ ID=centos
[2025-12-02 18:11:57] +++ ID_LIKE='rhel fedora'
[2025-12-02 18:11:57] +++ VERSION_ID=7
[2025-12-02 18:11:57] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-12-02 18:11:57] +++ ANSI_COLOR='0;31'
[2025-12-02 18:11:57] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-12-02 18:11:57] +++ HOME_URL=https://www.centos.org/
[2025-12-02 18:11:57] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-12-02 18:11:57] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-12-02 18:11:57] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-12-02 18:11:57] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-12-02 18:11:57] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-12-02 18:11:57] ++ echo 'CentOS Linux 7 (Core)'
[2025-12-02 18:11:57] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-12-02 18:11:57] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-12-02 18:11:57] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-12-02 18:11:57] + HOME=/scratch/boinc/var/slot76/slots/1
[2025-12-02 18:11:57] + export HOME
[2025-12-02 18:11:57] + cd /scratch/boinc/var/slot76/slots/1
[2025-12-02 18:11:57] + '[' '!' -z '' ']'
[2025-12-02 18:11:57] + '[' -z '' ']'
[2025-12-02 18:11:57] ++ /bin/hostname -f
[2025-12-02 18:11:57] + nodename=skurut10.grid.cesnet.cz
[2025-12-02 18:11:57] + echo nodename=skurut10.grid.cesnet.cz
[2025-12-02 18:11:57] + echo Processors=2
[2025-12-02 18:11:57] + echo Nodecount=1
[2025-12-02 18:11:57] + echo Benchmark=HEPSPEC:1.0
[2025-12-02 18:11:57] + executable=./runpilot2-wrapper.sh
[2025-12-02 18:11:57] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-12-02 18:11:57] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-12-02 18:11:57] ++ head -n 1
[2025-12-02 18:11:57] ++ tr -d '\0'
[2025-12-02 18:11:57] + line1='#!/bin/bash'
[2025-12-02 18:11:57] ++ echo '#!/bin/bash'
[2025-12-02 18:11:57] ++ sed -n 's/^#! *//p'
[2025-12-02 18:11:57] + shebang=/bin/bash
[2025-12-02 18:11:57] ++ echo /bin/bash
[2025-12-02 18:11:57] ++ awk '{print $1}'
[2025-12-02 18:11:57] + interpreter=/bin/bash
[2025-12-02 18:11:57] + '[' /bin/bash = /usr/bin/env ']'
[2025-12-02 18:11:57] + '[' x/bin/bash = x ']'
[2025-12-02 18:11:57] + type /bin/bash
[2025-12-02 18:11:57] + '[' xgnutime = xgnutime ']'
[2025-12-02 18:11:57] + /usr/bin/time -o /scratch/boinc/var/slot76/slots/1/7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.11.1.15 -z -t --piloturl local --mute --container
[2025-12-02 18:11:57] + RESULT=2
[2025-12-02 18:11:57] + sed -i -e /nodename=/d /scratch/boinc/var/slot76/slots/1/7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn.diag
[2025-12-02 18:11:57] ++ grep domain_name init_data.xml
[2025-12-02 18:11:57] ++ awk -F '>' '{print $2}'
[2025-12-02 18:11:57] ++ awk -F '<' '{print $1}'
[2025-12-02 18:11:57] ++ sed -e 's# #_#g'
[2025-12-02 18:11:57] + hostname=skurut10.grid.cesnet.cz
[2025-12-02 18:11:57] ++ grep user_name init_data.xml
[2025-12-02 18:11:57] ++ awk -F '>' '{print $2}'
[2025-12-02 18:11:57] ++ awk -F '<' '{print $1}'
[2025-12-02 18:11:57] ++ sed -e 's# #_#g'
[2025-12-02 18:11:57] + username=praguelcg2
[2025-12-02 18:11:57] + nodename=praguelcg2@skurut10.grid.cesnet.cz
[2025-12-02 18:11:57] + echo nodename=praguelcg2@skurut10.grid.cesnet.cz
[2025-12-02 18:11:57] + '[' -n 4 ']'
[2025-12-02 18:11:57] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot76/slots/1/7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn.diag
[2025-12-02 18:11:57] + echo exitcode=2
[2025-12-02 18:11:57] + runtimeenvironments=
[2025-12-02 18:11:57] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-12-02 18:11:57] + RTE_function_0 2
[2025-12-02 18:11:57] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-12-02 18:11:57] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-12-02 18:11:57] + export BOINC_APP=ATLAS
[2025-12-02 18:11:57] + BOINC_APP=ATLAS
[2025-12-02 18:11:57] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-12-02 18:11:57] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-12-02 18:11:57] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-12-02 18:11:57] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-12-02 18:11:57] + '[' -z 2 ']'
[2025-12-02 18:11:57] + '[' 2 == 1 ']'
[2025-12-02 18:11:57] + '[' 0 -ne 0 ']'
[2025-12-02 18:11:57] + echo 'zip all output files'
[2025-12-02 18:11:57] + flist='*.diag '
[2025-12-02 18:11:57] + for f in ./heartbeat.json ./output.list ./log.47523449._006025.job.log.1 ./log.47523449._006025.job.log.1 ./gmlog/
[2025-12-02 18:11:57] + '[' -e ./heartbeat.json ']'
[2025-12-02 18:11:57] + flist='*.diag  ./heartbeat.json'
[2025-12-02 18:11:57] + for f in ./heartbeat.json ./output.list ./log.47523449._006025.job.log.1 ./log.47523449._006025.job.log.1 ./gmlog/
[2025-12-02 18:11:57] + '[' -e ./output.list ']'
[2025-12-02 18:11:57] + for f in ./heartbeat.json ./output.list ./log.47523449._006025.job.log.1 ./log.47523449._006025.job.log.1 ./gmlog/
[2025-12-02 18:11:57] + '[' -e ./log.47523449._006025.job.log.1 ']'
[2025-12-02 18:11:57] + flist='*.diag  ./heartbeat.json ./log.47523449._006025.job.log.1'
[2025-12-02 18:11:57] + for f in ./heartbeat.json ./output.list ./log.47523449._006025.job.log.1 ./log.47523449._006025.job.log.1 ./gmlog/
[2025-12-02 18:11:57] + '[' -e ./log.47523449._006025.job.log.1 ']'
[2025-12-02 18:11:57] + flist='*.diag  ./heartbeat.json ./log.47523449._006025.job.log.1 ./log.47523449._006025.job.log.1'
[2025-12-02 18:11:57] + for f in ./heartbeat.json ./output.list ./log.47523449._006025.job.log.1 ./log.47523449._006025.job.log.1 ./gmlog/
[2025-12-02 18:11:57] + '[' -e ./gmlog/ ']'
[2025-12-02 18:11:57] + '[' -f output.list ']'
[2025-12-02 18:11:57] + tar cvf result.tar.gz 7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn.diag ./heartbeat.json ./log.47523449._006025.job.log.1 ./log.47523449._006025.job.log.1
[2025-12-02 18:11:57] + '[' xgnutime = xcgroup ']'
[2025-12-02 18:11:57] + '[' -n '' ']'
[2025-12-02 18:11:57] + '[' -n '' ']'
[2025-12-02 18:11:57] ++ date +%s
[2025-12-02 18:11:57] + ACCOUNTING_ENDTIME=1764695517
[2025-12-02 18:11:57] ++ date -d '1970-01-01 UTC 1764695316 seconds' +%Y%m%d%H%M%SZ
[2025-12-02 18:11:57] + echo LRMSStartTime=20251202180836Z
[2025-12-02 18:11:57] ++ date -d '1970-01-01 UTC 1764695517 seconds' +%Y%m%d%H%M%SZ
[2025-12-02 18:11:57] + echo LRMSEndTime=20251202181157Z
[2025-12-02 18:11:57] + echo walltime=201
[2025-12-02 18:11:57] + echo exitcode=2
[2025-12-02 18:11:57] + exit 2
[2025-12-02 18:11:57] ./pilotlog.txt
[2025-12-02 18:11:57] ./runtime_log
[2025-12-02 18:11:57] ./log.47523449._006025.job.log.1
[2025-12-02 18:11:57] ./runtime_log.err
[2025-12-02 18:11:57] ./pilot3/pilot/util/realtimelogger.py
[2025-12-02 18:11:57] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-12-02 18:11:57] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-12-02 18:11:57] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-12-02 18:11:57] ./pilot3/pilot/util/loggingsupport.py
[2025-12-02 18:11:57] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-12-02 18:11:57] ./PanDA_Pilot-6893864204/pilotlog.txt
[2025-12-02 18:11:57] ./PanDA_Pilot-6893864204/log.EVNTtoHITS
[2025-12-02 18:11:57] ./PanDA_Pilot-6893864204/PoolFileCatalog.xml.AthenaMP-saved
[2025-12-02 18:11:57] ./PanDA_Pilot-6893864204/PoolFileCatalog.xml.BAK
[2025-12-02 18:11:57] ./PanDA_Pilot-6893864204/PoolFileCatalog.xml
[2025-12-02 18:11:57] ./PanDA_Pilot-6893864204/prmon.log
[2025-12-02 18:11:57] ./log.47523449._006025.job.log.tgz.1
04:15:02 (1604970): wrapper (7.7.26015): starting
04:15:02 (1604970): wrapper: running run_atlas (--nthreads 4)
[2025-12-03 04:15:02] Arguments: --nthreads 4
[2025-12-03 04:15:02] Threads: 4
[2025-12-03 04:15:02] This job has been restarted, cleaning up previous attempt
[2025-12-03 04:15:02] Checking for CVMFS
[2025-12-03 04:15:02] No cvmfs_config command found, will try listing directly
[2025-12-03 04:15:02] CVMFS is ok
[2025-12-03 04:15:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 04:15:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 04:15:02] Further information can be found at the LHC@home message board.
[2025-12-03 04:15:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 04:15:02] Checking for apptainer binary...
[2025-12-03 04:15:03] which: no apptainer in ((null))
[2025-12-03 04:15:03] apptainer is not installed, using version from CVMFS
[2025-12-03 04:15:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 04:15:03] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot76/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-12-03 04:15:03] apptainer works
[2025-12-03 04:15:03] Set ATHENA_PROC_NUMBER=4
[2025-12-03 04:15:03] Set ATHENA_CORE_NUMBER=4
[2025-12-03 04:15:03] Starting ATLAS job with PandaID=6893864204
[2025-12-03 04:15:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot76/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 04:20:36] Job failed
[2025-12-03 04:20:36] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot76/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-12-03 04:20:36] ++ pwd
[2025-12-03 04:20:36] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot76/slots/1/
[2025-12-03 04:20:36] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot76/slots/1/
[2025-12-03 04:20:36] + mv ATLAS.root_0 EVNT.47493127._000603.pool.root.1
[2025-12-03 04:20:36] mv: 'ATLAS.root_0' and 'EVNT.47493127._000603.pool.root.1' are the same file
[2025-12-03 04:20:36] + tar --strip-components=5 -xvf input.tar.gz
[2025-12-03 04:20:36] + umask 077
[2025-12-03 04:20:36] ++ date +%s
[2025-12-03 04:20:36] + ACCOUNTING_STARTTIME=1764731703
[2025-12-03 04:20:36] + echo 'Detecting resource accounting method available for the job.'
[2025-12-03 04:20:36] Detecting resource accounting method available for the job.
[2025-12-03 04:20:36] + JOB_ACCOUNTING=
[2025-12-03 04:20:36] + command -v arc-job-cgroup
[2025-12-03 04:20:36] + '[' -z '' ']'
[2025-12-03 04:20:36] + GNU_TIME=/usr/bin/time
[2025-12-03 04:20:36] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-12-03 04:20:36] Looking for /usr/bin/time tool for accounting measurements
[2025-12-03 04:20:36] + '[' '!' -z /usr/bin/time ']'
[2025-12-03 04:20:36] + /usr/bin/time --version
[2025-12-03 04:20:36] + echo 'GNU time found and will be used for job accounting.'
[2025-12-03 04:20:36] GNU time found and will be used for job accounting.
[2025-12-03 04:20:36] + JOB_ACCOUNTING=gnutime
[2025-12-03 04:20:36] + '[' -z gnutime ']'
[2025-12-03 04:20:36] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-12-03 04:20:36] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-12-03 04:20:36] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-11-20/BOINC_MCORE/6893864204.out
[2025-12-03 04:20:36] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-11-20/BOINC_MCORE/6893864204.out
[2025-12-03 04:20:36] + export PILOT_NOKILL=YES
[2025-12-03 04:20:36] + PILOT_NOKILL=YES
[2025-12-03 04:20:36] + export GRID_GLOBAL_JOBID=7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn
[2025-12-03 04:20:36] + GRID_GLOBAL_JOBID=7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn
[2025-12-03 04:20:36] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn
[2025-12-03 04:20:36] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn
[2025-12-03 04:20:36] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-12-03 04:20:36] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-12-03 04:20:36] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-12-03 04:20:36] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-12-03 04:20:36] ++ pwd
[2025-12-03 04:20:36] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot76/slots/1
[2025-12-03 04:20:36] + RUNTIME_JOB_STDIN=/dev/null
[2025-12-03 04:20:36] ++ pwd
[2025-12-03 04:20:36] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot76/slots/1/log.47523449._006025.job.log.1
[2025-12-03 04:20:36] ++ pwd
[2025-12-03 04:20:36] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot76/slots/1/log.47523449._006025.job.log.1
[2025-12-03 04:20:36] ++ pwd
[2025-12-03 04:20:36] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot76/slots/1.diag
[2025-12-03 04:20:36] + '[' '!' -z '' ']'
[2025-12-03 04:20:36] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-12-03 04:20:36] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-12-03 04:20:36] + RUNTIME_FRONTEND_SEES_NODE=
[2025-12-03 04:20:36] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-12-03 04:20:36] + '[' '!' -z '' ']'
[2025-12-03 04:20:36] + '[' -z yes ']'
[2025-12-03 04:20:36] ++ pwd
[2025-12-03 04:20:36] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot76/slots/1/7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn.diag
[2025-12-03 04:20:36] + runtimeenvironments=
[2025-12-03 04:20:36] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-12-03 04:20:36] + RTE_function_0 1
[2025-12-03 04:20:36] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-12-03 04:20:36] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-12-03 04:20:36] + export BOINC_APP=ATLAS
[2025-12-03 04:20:36] + BOINC_APP=ATLAS
[2025-12-03 04:20:36] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-12-03 04:20:36] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-12-03 04:20:36] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-12-03 04:20:36] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-12-03 04:20:36] + '[' -z 1 ']'
[2025-12-03 04:20:36] + '[' 1 == 1 ']'
[2025-12-03 04:20:36] + shift
[2025-12-03 04:20:36] + export SITE_NAME=BOINC
[2025-12-03 04:20:36] + SITE_NAME=BOINC
[2025-12-03 04:20:36] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot76/slots/1/
[2025-12-03 04:20:36] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot76/slots/1/
[2025-12-03 04:20:36] + '[' -e /scratch/boinc/var/slot76/slots/1/init_data.xml ']'
[2025-12-03 04:20:36] + grep '<use_http_proxy/>' /scratch/boinc/var/slot76/slots/1/init_data.xml
[2025-12-03 04:20:36] + '[' 0 -ne 0 ']'
[2025-12-03 04:20:36] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-12-03 04:20:36] + '[' -f /etc/os-release ']'
[2025-12-03 04:20:36] +++ cat /etc/os-release
[2025-12-03 04:20:36] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-12-03 04:20:36] +++ NAME='CentOS Linux'
[2025-12-03 04:20:36] +++ VERSION='7 (Core)'
[2025-12-03 04:20:36] +++ ID=centos
[2025-12-03 04:20:36] +++ ID_LIKE='rhel fedora'
[2025-12-03 04:20:36] +++ VERSION_ID=7
[2025-12-03 04:20:36] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-12-03 04:20:36] +++ ANSI_COLOR='0;31'
[2025-12-03 04:20:36] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-12-03 04:20:36] +++ HOME_URL=https://www.centos.org/
[2025-12-03 04:20:36] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-12-03 04:20:36] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-12-03 04:20:36] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-12-03 04:20:36] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-12-03 04:20:36] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-12-03 04:20:36] ++ echo 'CentOS Linux 7 (Core)'
[2025-12-03 04:20:36] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-12-03 04:20:36] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-12-03 04:20:36] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-12-03 04:20:36] + HOME=/scratch/boinc/var/slot76/slots/1
[2025-12-03 04:20:36] + export HOME
[2025-12-03 04:20:36] + cd /scratch/boinc/var/slot76/slots/1
[2025-12-03 04:20:36] + '[' '!' -z '' ']'
[2025-12-03 04:20:36] + '[' -z '' ']'
[2025-12-03 04:20:36] ++ /bin/hostname -f
[2025-12-03 04:20:36] + nodename=skurut10.grid.cesnet.cz
[2025-12-03 04:20:36] + echo nodename=skurut10.grid.cesnet.cz
[2025-12-03 04:20:36] + echo Processors=2
[2025-12-03 04:20:36] + echo Nodecount=1
[2025-12-03 04:20:36] + echo Benchmark=HEPSPEC:1.0
[2025-12-03 04:20:36] + executable=./runpilot2-wrapper.sh
[2025-12-03 04:20:36] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-12-03 04:20:36] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-12-03 04:20:36] ++ head -n 1
[2025-12-03 04:20:36] ++ tr -d '\0'
[2025-12-03 04:20:36] + line1='#!/bin/bash'
[2025-12-03 04:20:36] ++ echo '#!/bin/bash'
[2025-12-03 04:20:36] ++ sed -n 's/^#! *//p'
[2025-12-03 04:20:36] + shebang=/bin/bash
[2025-12-03 04:20:36] ++ echo /bin/bash
[2025-12-03 04:20:36] ++ awk '{print $1}'
[2025-12-03 04:20:36] + interpreter=/bin/bash
[2025-12-03 04:20:36] + '[' /bin/bash = /usr/bin/env ']'
[2025-12-03 04:20:36] + '[' x/bin/bash = x ']'
[2025-12-03 04:20:36] + type /bin/bash
[2025-12-03 04:20:36] + '[' xgnutime = xgnutime ']'
[2025-12-03 04:20:36] + /usr/bin/time -o /scratch/boinc/var/slot76/slots/1/7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.11.1.15 -z -t --piloturl local --mute --container
[2025-12-03 04:20:36] + RESULT=2
[2025-12-03 04:20:36] + sed -i -e /nodename=/d /scratch/boinc/var/slot76/slots/1/7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn.diag
[2025-12-03 04:20:36] ++ grep domain_name init_data.xml
[2025-12-03 04:20:36] ++ awk -F '>' '{print $2}'
[2025-12-03 04:20:36] ++ awk -F '<' '{print $1}'
[2025-12-03 04:20:36] ++ sed -e 's# #_#g'
[2025-12-03 04:20:36] + hostname=skurut10.grid.cesnet.cz
[2025-12-03 04:20:36] ++ grep user_name init_data.xml
[2025-12-03 04:20:36] ++ awk -F '>' '{print $2}'
[2025-12-03 04:20:36] ++ awk -F '<' '{print $1}'
[2025-12-03 04:20:36] ++ sed -e 's# #_#g'
[2025-12-03 04:20:36] + username=praguelcg2
[2025-12-03 04:20:36] + nodename=praguelcg2@skurut10.grid.cesnet.cz
[2025-12-03 04:20:36] + echo nodename=praguelcg2@skurut10.grid.cesnet.cz
[2025-12-03 04:20:36] + '[' -n 4 ']'
[2025-12-03 04:20:36] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot76/slots/1/7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn.diag
[2025-12-03 04:20:36] + echo exitcode=2
[2025-12-03 04:20:36] + runtimeenvironments=
[2025-12-03 04:20:36] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-12-03 04:20:36] + RTE_function_0 2
[2025-12-03 04:20:36] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-12-03 04:20:36] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-12-03 04:20:36] + export BOINC_APP=ATLAS
[2025-12-03 04:20:36] + BOINC_APP=ATLAS
[2025-12-03 04:20:36] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-12-03 04:20:36] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-12-03 04:20:36] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-12-03 04:20:36] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-12-03 04:20:36] + '[' -z 2 ']'
[2025-12-03 04:20:36] + '[' 2 == 1 ']'
[2025-12-03 04:20:36] + '[' 0 -ne 0 ']'
[2025-12-03 04:20:36] + echo 'zip all output files'
[2025-12-03 04:20:36] + flist='*.diag '
[2025-12-03 04:20:36] + for f in ./heartbeat.json ./output.list ./log.47523449._006025.job.log.1 ./log.47523449._006025.job.log.1 ./gmlog/
[2025-12-03 04:20:36] + '[' -e ./heartbeat.json ']'
[2025-12-03 04:20:36] + flist='*.diag  ./heartbeat.json'
[2025-12-03 04:20:36] + for f in ./heartbeat.json ./output.list ./log.47523449._006025.job.log.1 ./log.47523449._006025.job.log.1 ./gmlog/
[2025-12-03 04:20:36] + '[' -e ./output.list ']'
[2025-12-03 04:20:36] + for f in ./heartbeat.json ./output.list ./log.47523449._006025.job.log.1 ./log.47523449._006025.job.log.1 ./gmlog/
[2025-12-03 04:20:36] + '[' -e ./log.47523449._006025.job.log.1 ']'
[2025-12-03 04:20:36] + flist='*.diag  ./heartbeat.json ./log.47523449._006025.job.log.1'
[2025-12-03 04:20:36] + for f in ./heartbeat.json ./output.list ./log.47523449._006025.job.log.1 ./log.47523449._006025.job.log.1 ./gmlog/
[2025-12-03 04:20:36] + '[' -e ./log.47523449._006025.job.log.1 ']'
[2025-12-03 04:20:36] + flist='*.diag  ./heartbeat.json ./log.47523449._006025.job.log.1 ./log.47523449._006025.job.log.1'
[2025-12-03 04:20:36] + for f in ./heartbeat.json ./output.list ./log.47523449._006025.job.log.1 ./log.47523449._006025.job.log.1 ./gmlog/
[2025-12-03 04:20:36] + '[' -e ./gmlog/ ']'
[2025-12-03 04:20:36] + '[' -f output.list ']'
[2025-12-03 04:20:36] + tar cvf result.tar.gz 7MNKDmOgKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw3HKDmQpagWn.diag ./heartbeat.json ./log.47523449._006025.job.log.1 ./log.47523449._006025.job.log.1
[2025-12-03 04:20:36] + '[' xgnutime = xcgroup ']'
[2025-12-03 04:20:36] + '[' -n '' ']'
[2025-12-03 04:20:36] + '[' -n '' ']'
[2025-12-03 04:20:36] ++ date +%s
[2025-12-03 04:20:36] + ACCOUNTING_ENDTIME=1764731897
[2025-12-03 04:20:36] ++ date -d '1970-01-01 UTC 1764731703 seconds' +%Y%m%d%H%M%SZ
[2025-12-03 04:20:36] + echo LRMSStartTime=20251203041503Z
[2025-12-03 04:20:36] ++ date -d '1970-01-01 UTC 1764731897 seconds' +%Y%m%d%H%M%SZ
[2025-12-03 04:20:36] + echo LRMSEndTime=20251203041817Z
[2025-12-03 04:20:36] + echo walltime=194
[2025-12-03 04:20:36] + echo exitcode=2
[2025-12-03 04:20:36] + exit 2
[2025-12-03 04:20:36] ./pilotlog.txt
[2025-12-03 04:20:36] ./runtime_log
[2025-12-03 04:20:36] ./log.47523449._006025.job.log.1
[2025-12-03 04:20:36] ./runtime_log.err
[2025-12-03 04:20:36] ./pilot3/pilot/util/realtimelogger.py
[2025-12-03 04:20:36] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-12-03 04:20:36] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-12-03 04:20:36] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-12-03 04:20:36] ./pilot3/pilot/util/loggingsupport.py
[2025-12-03 04:20:36] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-12-03 04:20:36] ./PanDA_Pilot-6893864204/pilotlog.txt
[2025-12-03 04:20:36] ./PanDA_Pilot-6893864204/log.EVNTtoHITS
[2025-12-03 04:20:36] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/worker_3/AthenaMP.log
[2025-12-03 04:20:36] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/worker_3/PoolFileCatalog.xml.BAK
[2025-12-03 04:20:36] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/worker_3/PoolFileCatalog.xml
[2025-12-03 04:20:36] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/evt_counter/AthenaMP.log
[2025-12-03 04:20:36] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/evt_counter/PoolFileCatalog.xml.BAK
[2025-12-03 04:20:36] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/evt_counter/PoolFileCatalog.xml
[2025-12-03 04:20:36] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/worker_2/AthenaMP.log
[2025-12-03 04:20:36] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/worker_2/PoolFileCatalog.xml.BAK
[2025-12-03 04:20:36] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/worker_2/PoolFileCatalog.xml
[2025-12-03 04:20:36] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/worker_1/AthenaMP.log
[2025-12-03 04:20:36] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/worker_1/PoolFileCatalog.xml.BAK
[2025-12-03 04:20:36] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/worker_1/PoolFileCatalog.xml
[2025-12-03 04:20:36] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/worker_0/AthenaMP.log
[2025-12-03 04:20:36] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/worker_0/PoolFileCatalog.xml.BAK
[2025-12-03 04:20:36] ./PanDA_Pilot-6893864204/athenaMP-workers-EVNTtoHITS-sim/worker_0/PoolFileCatalog.xml
[2025-12-03 04:20:36] ./PanDA_Pilot-6893864204/PoolFileCatalog.xml.AthenaMP-saved
[2025-12-03 04:20:36] ./PanDA_Pilot-6893864204/PoolFileCatalog.xml.BAK
[2025-12-03 04:20:36] ./PanDA_Pilot-6893864204/PoolFileCa

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