Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:14:24 (843243): wrapper (7.7.26015): starting
03:14:24 (843243): wrapper: running run_atlas (--nthreads 4)
[2025-11-23 03:14:24] Arguments: --nthreads 4
[2025-11-23 03:14:24] Threads: 4
[2025-11-23 03:14:24] Checking for CVMFS
[2025-11-23 03:14:24] No cvmfs_config command found, will try listing directly
[2025-11-23 03:14:24] CVMFS is ok
[2025-11-23 03:14:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 03:14:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 03:14:24] Further information can be found at the LHC@home message board.
[2025-11-23 03:14:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 03:14:24] Checking for apptainer binary...
[2025-11-23 03:14:24] which: no apptainer in ((null))
[2025-11-23 03:14:24] apptainer is not installed, using version from CVMFS
[2025-11-23 03:14:24] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 03:14:24] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot104/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2025-11-23 03:14:24] apptainer works
[2025-11-23 03:14:24] Set ATHENA_PROC_NUMBER=4
[2025-11-23 03:14:24] Set ATHENA_CORE_NUMBER=4
[2025-11-23 03:14:24] Starting ATLAS job with PandaID=6893836681
[2025-11-23 03:14:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot104/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 19:57:31]  *** The last 200 lines of the pilot log: ***
[2025-11-23 19:57:31] 2025-11-23 18:56:25,869 | INFO     | monitor loop #3942: job 0:6893836681 is in state 'finished'
[2025-11-23 19:57:31] 2025-11-23 18:56:25,869 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 19:57:31] 2025-11-23 18:56:27,041 | INFO     | time since job start (60108s) is within the limit (172800.0s)
[2025-11-23 19:57:31] 2025-11-23 18:56:27,850 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 19:57:31] 2025-11-23 18:56:27,871 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2714.866960937499
[2025-11-23 19:57:31] 2025-11-23 18:56:27,896 | INFO     | using path: /scratch/boinc/var/slot104/slots/0/PanDA_Pilot-6893836681/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 19:57:31] 2025-11-23 18:56:27,896 | INFO     | extracted standard info from prmon json
[2025-11-23 19:57:31] 2025-11-23 18:56:27,896 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 19:57:31] 2025-11-23 18:56:27,896 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 19:57:31] 2025-11-23 18:56:27,913 | INFO     | fitting pss+swap vs Time
[2025-11-23 19:57:31] 2025-11-23 18:56:27,914 | INFO     | sum of square deviations: 296338865919.83765
[2025-11-23 19:57:31] 2025-11-23 18:56:27,937 | INFO     | sum of deviations: 709989851171.848
[2025-11-23 19:57:31] 2025-11-23 18:56:27,937 | INFO     | mean x: 1763894124.0964468
[2025-11-23 19:57:31] 2025-11-23 18:56:27,937 | INFO     | mean y: 2272690.1279187817
[2025-11-23 19:57:31] 2025-11-23 18:56:27,937 | INFO     | intersect: -4223791018.2649746
[2025-11-23 19:57:31] 2025-11-23 18:56:27,938 | INFO     | chi2: 4.1769300028292875
[2025-11-23 19:57:31] 2025-11-23 18:56:27,939 | INFO     | sum of square deviations: 291849006059.791
[2025-11-23 19:57:31] 2025-11-23 18:56:27,962 | INFO     | sum of deviations: 926753906278.5311
[2025-11-23 19:57:31] 2025-11-23 18:56:27,962 | INFO     | mean x: 1763893971.5969388
[2025-11-23 19:57:31] 2025-11-23 18:56:27,963 | INFO     | mean y: 2280050.5102040814
[2025-11-23 19:57:31] 2025-11-23 18:56:27,963 | INFO     | intersect: -5598889028.351472
[2025-11-23 19:57:31] 2025-11-23 18:56:27,964 | INFO     | chi2: 1.8007660402374783
[2025-11-23 19:57:31] 2025-11-23 18:56:27,964 | INFO     | current chi2=1.8007660402374783 (change=56.88780901241556 %)
[2025-11-23 19:57:31] 2025-11-23 18:56:27,965 | INFO     | sum of square deviations: 287404728449.74365
[2025-11-23 19:57:31] 2025-11-23 18:56:27,987 | INFO     | sum of deviations: 929240958744.6199
[2025-11-23 19:57:31] 2025-11-23 18:56:27,987 | INFO     | mean x: 1763893819.097436
[2025-11-23 19:57:31] 2025-11-23 18:56:27,987 | INFO     | mean y: 2280134.688205128
[2025-11-23 19:57:31] 2025-11-23 18:56:27,987 | INFO     | intersect: -5700765853.5354185
[2025-11-23 19:57:31] 2025-11-23 18:56:27,988 | INFO     | chi2: 1.783458330952729
[2025-11-23 19:57:31] 2025-11-23 18:56:27,988 | INFO     | current chi2=1.783458330952729 (change=0.9611303688549604 %)
[2025-11-23 19:57:31] 2025-11-23 18:56:27,988 | INFO     | right removable region: 974
[2025-11-23 19:57:31] 2025-11-23 18:56:27,990 | INFO     | sum of square deviations: 291848948109.79095
[2025-11-23 19:57:31] 2025-11-23 18:56:28,012 | INFO     | sum of deviations: 545976603379.3614
[2025-11-23 19:57:31] 2025-11-23 18:56:28,012 | INFO     | mean x: 1763894276.5969388
[2025-11-23 19:57:31] 2025-11-23 18:56:28,012 | INFO     | mean y: 2278249.8540816326
[2025-11-23 19:57:31] 2025-11-23 18:56:28,012 | INFO     | intersect: -3297528078.3647323
[2025-11-23 19:57:31] 2025-11-23 18:56:28,013 | INFO     | chi2: 2.49270315304139
[2025-11-23 19:57:31] 2025-11-23 18:56:28,014 | INFO     | current chi2=2.49270315304139 (change=40.32212291436698 %)
[2025-11-23 19:57:31] 2025-11-23 18:56:28,015 | INFO     | sum of square deviations: 287404612549.7438
[2025-11-23 19:57:31] 2025-11-23 18:56:28,038 | INFO     | sum of deviations: 516530778262.5734
[2025-11-23 19:57:31] 2025-11-23 18:56:28,038 | INFO     | mean x: 1763894429.097436
[2025-11-23 19:57:31] 2025-11-23 18:56:28,038 | INFO     | mean y: 2279259.90974359
[2025-11-23 19:57:31] 2025-11-23 18:56:28,038 | INFO     | intersect: -3167836049.4853783
[2025-11-23 19:57:31] 2025-11-23 18:56:28,039 | INFO     | chi2: 2.474708971784398
[2025-11-23 19:57:31] 2025-11-23 18:56:28,040 | INFO     | current chi2=2.474708971784398 (change=0.7218742125405874 %)
[2025-11-23 19:57:31] 2025-11-23 18:56:28,040 | INFO     | left removable region: 20
[2025-11-23 19:57:31] 2025-11-23 18:56:28,041 | INFO     | sum of square deviations: 269231040387.04147
[2025-11-23 19:57:31] 2025-11-23 18:56:28,063 | INFO     | sum of deviations: 691808865802.6494
[2025-11-23 19:57:31] 2025-11-23 18:56:28,063 | INFO     | mean x: 1763894398.5995808
[2025-11-23 19:57:31] 2025-11-23 18:56:28,063 | INFO     | mean y: 2288297.1247379454
[2025-11-23 19:57:31] 2025-11-23 18:56:28,063 | INFO     | intersect: -4530167475.941302
[2025-11-23 19:57:31] 2025-11-23 18:56:28,064 | INFO     | chi2: 0.06102906206011874
[2025-11-23 19:57:31] 2025-11-23 18:56:28,064 | INFO     | current memory leak: 2.57 B/s (using 954 data points, chi2=0.06)
[2025-11-23 19:57:31] 2025-11-23 18:56:28,066 | INFO     | could have reported an average CPU frequency of 2696 MHz (37 samples)
[2025-11-23 19:57:31] 2025-11-23 18:56:28,066 | INFO     | ..............................
[2025-11-23 19:57:31] 2025-11-23 18:56:28,066 | INFO     | . Timing measurements:
[2025-11-23 19:57:31] 2025-11-23 18:56:28,066 | INFO     | . get job = 0 s
[2025-11-23 19:57:31] 2025-11-23 18:56:28,066 | INFO     | . initial setup = 1 s
[2025-11-23 19:57:31] 2025-11-23 18:56:28,066 | INFO     | . payload setup = 8 s
[2025-11-23 19:57:31] 2025-11-23 18:56:28,066 | INFO     | . stage-in = 0 s
[2025-11-23 19:57:31] 2025-11-23 18:56:28,066 | INFO     | . payload execution = 60068 s
[2025-11-23 19:57:31] 2025-11-23 18:56:28,066 | INFO     | . stage-out = 2 s
[2025-11-23 19:57:31] 2025-11-23 18:56:28,066 | INFO     | . log creation = 0 s
[2025-11-23 19:57:31] 2025-11-23 18:56:28,067 | INFO     | ..............................
[2025-11-23 19:57:31] 2025-11-23 18:56:28,372 | INFO     | 
[2025-11-23 19:57:31] 2025-11-23 18:56:28,373 | INFO     | job summary report
[2025-11-23 19:57:31] 2025-11-23 18:56:28,373 | INFO     | --------------------------------------------------
[2025-11-23 19:57:31] 2025-11-23 18:56:28,373 | INFO     | PanDA job id: 6893836681
[2025-11-23 19:57:31] 2025-11-23 18:56:28,373 | INFO     | task id: 47523449
[2025-11-23 19:57:31] 2025-11-23 18:56:28,373 | INFO     | errors: (none)
[2025-11-23 19:57:31] 2025-11-23 18:56:28,373 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 19:57:31] 2025-11-23 18:56:28,373 | INFO     | pilot state: finished 
[2025-11-23 19:57:31] 2025-11-23 18:56:28,373 | INFO     | transexitcode: 0
[2025-11-23 19:57:31] 2025-11-23 18:56:28,373 | INFO     | exeerrorcode: 0
[2025-11-23 19:57:31] 2025-11-23 18:56:28,373 | INFO     | exeerrordiag: 
[2025-11-23 19:57:31] 2025-11-23 18:56:28,373 | INFO     | exitcode: 0
[2025-11-23 19:57:31] 2025-11-23 18:56:28,374 | INFO     | exitmsg: OK
[2025-11-23 19:57:31] 2025-11-23 18:56:28,374 | INFO     | cpuconsumptiontime: 231899 s
[2025-11-23 19:57:31] 2025-11-23 18:56:28,374 | INFO     | nevents: 1000
[2025-11-23 19:57:31] 2025-11-23 18:56:28,374 | INFO     | neventsw: 0
[2025-11-23 19:57:31] 2025-11-23 18:56:28,374 | INFO     | pid: 855149
[2025-11-23 19:57:31] 2025-11-23 18:56:28,374 | INFO     | pgrp: 855149
[2025-11-23 19:57:31] 2025-11-23 18:56:28,374 | INFO     | corecount: 4
[2025-11-23 19:57:31] 2025-11-23 18:56:28,374 | INFO     | event service: False
[2025-11-23 19:57:31] 2025-11-23 18:56:28,374 | INFO     | sizes: {0: 2297979, 1: 2298847, 7: 2299109, 12: 2299137, 60080: 2353976, 60084: 2362994, 60085: 2363178, 60091: 2363424}
[2025-11-23 19:57:31] 2025-11-23 18:56:28,374 | INFO     | --------------------------------------------------
[2025-11-23 19:57:31] 2025-11-23 18:56:28,374 | INFO     | 
[2025-11-23 19:57:31] 2025-11-23 18:56:28,374 | INFO     | executing command: ls -lF /scratch/boinc/var/slot104/slots/0
[2025-11-23 19:57:31] 2025-11-23 18:56:28,404 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 19:57:31] 2025-11-23 18:56:28,405 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 19:57:31] 2025-11-23 18:56:28,405 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 19:57:31] 2025-11-23 18:56:28,405 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 19:57:31] 2025-11-23 18:56:28,405 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 19:57:31] 2025-11-23 18:56:28,405 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 19:57:31] 2025-11-23 18:56:28,405 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 19:57:31] 2025-11-23 18:56:28,405 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 19:57:31] 2025-11-23 18:56:28,405 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 19:57:31] 2025-11-23 18:56:28,405 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 19:57:31] 2025-11-23 18:56:28,406 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 19:57:31] 2025-11-23 18:56:28,406 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 19:57:31] 2025-11-23 18:56:28,406 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 19:57:31] 2025-11-23 18:56:28,406 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 19:57:31] 2025-11-23 18:56:28,406 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 19:57:31] 2025-11-23 18:56:28,406 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 19:57:31] 2025-11-23 18:56:28,406 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 19:57:31] 2025-11-23 18:56:28,406 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 19:57:31] 2025-11-23 18:56:28,406 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 19:57:31] 2025-11-23 18:56:28,406 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 19:57:31] 2025-11-23 18:56:28,407 | INFO     | job 6893836681 has completed (purged errors)
[2025-11-23 19:57:31] 2025-11-23 18:56:28,407 | INFO     | overall cleanup function is called
[2025-11-23 19:57:31] 2025-11-23 18:56:29,421 | INFO     | --- collectZombieJob: --- 10, [855149]
[2025-11-23 19:57:31] 2025-11-23 18:56:29,421 | INFO     | zombie collector waiting for pid 855149
[2025-11-23 19:57:31] 2025-11-23 18:56:29,421 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 19:57:31] 2025-11-23 18:56:29,422 | INFO     | collected zombie processes
[2025-11-23 19:57:31] 2025-11-23 18:56:29,422 | INFO     | will attempt to kill all subprocesses of pid=855149
[2025-11-23 19:57:31] 2025-11-23 18:56:30,233 | INFO     | process IDs to be killed: [855149] (in reverse order)
[2025-11-23 19:57:31] 2025-11-23 18:56:30,501 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 19:57:31] 2025-11-23 18:56:30,501 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 19:57:31] 2025-11-23 18:56:30,538 | INFO     | did not find any defunct processes belonging to 855149
[2025-11-23 19:57:31] 2025-11-23 18:56:30,577 | INFO     | did not find any defunct processes belonging to 855149
[2025-11-23 19:57:31] 2025-11-23 18:56:30,579 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 19:57:31] 2025-11-23 18:56:30,580 | INFO     | ready for new job
[2025-11-23 19:57:31] 2025-11-23 18:56:30,580 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 19:57:31] 2025-11-23 18:56:30,586 | INFO     | ***************************************
[2025-11-23 19:57:31] 2025-11-23 18:56:30,586 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 19:57:31] 2025-11-23 18:56:30,586 | INFO     | ***************************************
[2025-11-23 19:57:31] 2025-11-23 18:56:30,587 | INFO     | 
[2025-11-23 19:57:31] 2025-11-23 18:56:30,595 | INFO     | architecture information:
[2025-11-23 19:57:31] 2025-11-23 18:56:30,596 | INFO     | executing command: cat /etc/os-release
[2025-11-23 19:57:31] 2025-11-23 18:56:30,620 | INFO     | cat /etc/os-release:
[2025-11-23 19:57:31] NAME="CentOS Linux"
[2025-11-23 19:57:31] VERSION="7 (Core)"
[2025-11-23 19:57:31] ID="centos"
[2025-11-23 19:57:31] ID_LIKE="rhel fedora"
[2025-11-23 19:57:31] VERSION_ID="7"
[2025-11-23 19:57:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 19:57:31] ANSI_COLOR="0;31"
[2025-11-23 19:57:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 19:57:31] HOME_URL="https://www.centos.org/"
[2025-11-23 19:57:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 19:57:31] 
[2025-11-23 19:57:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 19:57:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 19:57:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 19:57:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 19:57:31] 
[2025-11-23 19:57:31] 2025-11-23 18:56:30,620 | INFO     | ***************************************
[2025-11-23 19:57:31] 2025-11-23 18:56:31,123 | INFO     | executing command: df -mP /scratch/boinc/var/slot104/slots/0
[2025-11-23 19:57:31] 2025-11-23 18:56:31,148 | INFO     | sufficient remaining disk space (3292908224512 B)
[2025-11-23 19:57:31] 2025-11-23 18:56:31,148 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 19:57:31] 2025-11-23 18:56:31,148 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 19:57:31] 2025-11-23 18:56:31,149 | INFO     | update_server=False
[2025-11-23 19:57:31] 2025-11-23 18:56:31,149 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 19:57:31] 2025-11-23 18:56:31,149 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 19:57:31] 2025-11-23 18:56:31,246 | INFO     | all job control threads have been joined
[2025-11-23 19:57:31] 2025-11-23 18:56:31,411 | INFO     | all data control threads have been joined
[2025-11-23 19:57:31] 2025-11-23 18:56:31,803 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 19:57:31] 2025-11-23 18:56:31,890 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 19:57:31] 2025-11-23 18:56:31,891 | INFO     | aborting loop
[2025-11-23 19:57:31] 2025-11-23 18:56:32,149 | INFO     | [job] retrieve thread has finished
[2025-11-23 19:57:31] 2025-11-23 18:56:32,221 | INFO     | [job] validate thread has finished
[2025-11-23 19:57:31] 2025-11-23 18:56:32,252 | INFO     | [job] control thread has finished
[2025-11-23 19:57:31] 2025-11-23 18:56:32,417 | INFO     | [data] control thread has finished
[2025-11-23 19:57:31] 2025-11-23 18:56:32,585 | INFO     | all payload control threads have been joined
[2025-11-23 19:57:31] 2025-11-23 18:56:32,594 | INFO     | [payload] validate_post thread has finished
[2025-11-23 19:57:31] 2025-11-23 18:56:32,639 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 19:57:31] 2025-11-23 18:56:32,896 | INFO     | [job] job monitor thread has finished
[2025-11-23 19:57:31] 2025-11-23 18:56:33,155 | INFO     | [data] copytool_out thread has finished
[2025-11-23 19:57:31] 2025-11-23 18:56:33,174 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 19:57:31] 2025-11-23 18:56:33,212 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 19:57:31] 2025-11-23 18:56:33,233 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 19:57:31] 2025-11-23 18:56:33,284 | INFO     | [data] copytool_in thread has finished
[2025-11-23 19:57:31] 2025-11-23 18:56:33,477 | INFO     | [payload] failed_post thread has finished
[2025-11-23 19:57:31] 2025-11-23 18:56:33,591 | INFO     | [payload] control thread has finished
[2025-11-23 19:57:31] 2025-11-23 18:56:33,607 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 19:57:31] 2025-11-23 18:56:34,180 | INFO     | [job] queue monitor thread has finished
[2025-11-23 19:57:31] 2025-11-23 18:56:35,809 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 19:57:31] 2025-11-23 18:57:01,055 | INFO     | PID=847244 has CPU usage=10.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 19:57:31] 2025-11-23 18:57:01,055 | INFO     | .. there are 8 such processes running
[2025-11-23 19:57:31] 2025-11-23 18:57:01,056 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 19:57:31] 2025-11-23 18:57:01,056 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 19:57:31] 2025-11-23 18:57:01,056 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 19:57:31] 2025-11-23 18:57:19,425 | INFO     | [monitor] cgroup control has ended
[2025-11-23 19:57:31] 2025-11-23 18:57:21,073 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23197350209344)>', '<ExcThread(monitor, started 23197040748288)>']
[2025-11-23 19:57:31] 2025-11-23 18:57:21,148 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 19:57:31] 2025-11-23 18:57:21,149 | INFO     | [monitor] control thread has ended
[2025-11-23 19:57:31] 2025-11-23 18:57:26,098 | INFO     | all workflow threads have been joined
[2025-11-23 19:57:31] 2025-11-23 18:57:26,099 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 19:57:31] 2025-11-23 18:57:26,099 | INFO     | traces error code: 0
[2025-11-23 19:57:31] 2025-11-23 18:57:26,099 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 19:57:31] 2025-11-23 18:57:26,325 [wrapper] ==== pilot stdout END ====
[2025-11-23 19:57:31] 2025-11-23 18:57:26,329 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 19:57:31] 2025-11-23 18:57:26,332 [wrapper] pilotpid: 847244
[2025-11-23 19:57:31] 2025-11-23 18:57:26,336 [wrapper] Pilot exit status: 0
[2025-11-23 19:57:31] 2025-11-23 18:57:26,350 [wrapper] pandaids: 6893836681
[2025-11-23 19:57:31] 2025-11-23 18:57:26,525 [wrapper] cleanup supervisor_pilot 2699884 847245
[2025-11-23 19:57:31] 2025-11-23 18:57:26,529 [wrapper] Test setup, not cleaning
[2025-11-23 19:57:31] 2025-11-23 18:57:26,534 [wrapper] apfmon messages muted
[2025-11-23 19:57:31] 2025-11-23 18:57:26,538 [wrapper] ==== wrapper stdout END ====
[2025-11-23 19:57:31] 2025-11-23 18:57:26,542 [wrapper] ==== wrapper stderr END ====
[2025-11-23 19:57:31]  *** Error codes and diagnostics ***
[2025-11-23 19:57:31]     "exeErrorCode": 0,
[2025-11-23 19:57:31]     "exeErrorDiag": "",
[2025-11-23 19:57:31]     "pilotErrorCode": 0,
[2025-11-23 19:57:31]     "pilotErrorDiag": "",
[2025-11-23 19:57:31]  *** Listing of results directory ***
[2025-11-23 19:57:31] total 1330212
[2025-11-23 19:57:31] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-23 19:57:31] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:17 queuedata.json
[2025-11-23 19:57:31] -rwx------ 1 boinc boinc     36292 Nov 20 11:18 runpilot2-wrapper.sh
[2025-11-23 19:57:31] -rw-r--r-- 1 boinc boinc       100 Nov 23 03:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 19:57:31] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 03:14 run_atlas
[2025-11-23 19:57:31] -rw-r--r-- 1 boinc boinc       105 Nov 23 03:14 job.xml
[2025-11-23 19:57:31] -rw-r--r-- 1 boinc boinc      6688 Nov 23 03:14 init_data.xml
[2025-11-23 19:57:31] -rw-r--r-- 2 boinc boinc 409165704 Nov 23 03:14 EVNT.47493127._000113.pool.root.1
[2025-11-23 19:57:31] -rw-r--r-- 2 boinc boinc     15847 Nov 23 03:14 start_atlas.sh
[2025-11-23 19:57:31] drwxrwx--x 2 boinc boinc      4096 Nov 23 03:14 shared
[2025-11-23 19:57:31] -rw-r--r-- 2 boinc boinc    590100 Nov 23 03:14 input.tar.gz
[2025-11-23 19:57:31] -rw-r--r-- 1 boinc boinc         0 Nov 23 03:14 boinc_lockfile
[2025-11-23 19:57:31] -rw-r--r-- 1 boinc boinc      2786 Nov 23 03:14 pandaJob.out
[2025-11-23 19:57:31] -rw------- 1 boinc boinc    989784 Nov 23 03:14 agis_schedconf.cvmfs.json
[2025-11-23 19:57:31] drwx------ 5 boinc boinc      4096 Nov 23 03:14 pilot3
[2025-11-23 19:57:31] -rw-r--r-- 1 boinc boinc       532 Nov 23 19:49 boinc_task_state.xml
[2025-11-23 19:57:31] -rw------- 1 boinc boinc 929346004 Nov 23 19:55 HITS.47523449._001127.pool.root.1
[2025-11-23 19:57:31] -rw------- 1 boinc boinc      1038 Nov 23 19:56 memory_monitor_summary.json
[2025-11-23 19:57:31] -rw------- 1 boinc boinc   1526164 Nov 23 19:56 agis_ddmendpoints.agis.ALL.json
[2025-11-23 19:57:31] -rw------- 1 boinc boinc   1702812 Nov 23 19:56 log.47523449._001127.job.log.tgz.1
[2025-11-23 19:57:31] -rw------- 1 boinc boinc      8593 Nov 23 19:56 heartbeat.json
[2025-11-23 19:57:31] -rw------- 1 boinc boinc        95 Nov 23 19:57 pilot_heartbeat.json
[2025-11-23 19:57:31] -rw------- 1 boinc boinc      4835 Nov 23 19:57 pilotlog.txt
[2025-11-23 19:57:31] -rw------- 1 boinc boinc   8150904 Nov 23 19:57 log.47523449._001127.job.log.1
[2025-11-23 19:57:31] -rw------- 1 boinc boinc       353 Nov 23 19:57 output.list
[2025-11-23 19:57:31] -rw-r--r-- 1 boinc boinc       620 Nov 23 19:57 runtime_log
[2025-11-23 19:57:31] -rw------- 1 boinc boinc   9871360 Nov 23 19:57 result.tar.gz
[2025-11-23 19:57:31] -rw-r--r-- 1 boinc boinc      9223 Nov 23 19:57 runtime_log.err
[2025-11-23 19:57:31] -rw------- 1 boinc boinc       671 Nov 23 19:57 lrGKDm3uGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxIHKDmpin3hm.diag
[2025-11-23 19:57:31] -rw-r--r-- 1 boinc boinc        28 Nov 23 19:57 wrapper_checkpoint.txt
[2025-11-23 19:57:31] -rw-r--r-- 1 boinc boinc      8192 Nov 23 19:57 boinc_mmap_file
[2025-11-23 19:57:31] -rw-r--r-- 1 boinc boinc     21112 Nov 23 19:57 stderr.txt
[2025-11-23 19:57:31] HITS file was successfully produced:
[2025-11-23 19:57:31] -rw------- 1 boinc boinc 929346004 Nov 23 19:55 shared/HITS.pool.root.1
[2025-11-23 19:57:31]  *** Contents of shared directory: ***
[2025-11-23 19:57:31] total 1317388
[2025-11-23 19:57:31] -rw-r--r-- 2 boinc boinc 409165704 Nov 23 03:14 ATLAS.root_0
[2025-11-23 19:57:31] -rw-r--r-- 2 boinc boinc     15847 Nov 23 03:14 start_atlas.sh
[2025-11-23 19:57:31] -rw-r--r-- 2 boinc boinc    590100 Nov 23 03:14 input.tar.gz
[2025-11-23 19:57:31] -rw------- 1 boinc boinc 929346004 Nov 23 19:55 HITS.pool.root.1
[2025-11-23 19:57:31] -rw------- 1 boinc boinc   9871360 Nov 23 19:57 result.tar.gz
19:57:32 (843243): run_atlas exited; CPU time 234666.556462
19:57:32 (843243): called boinc_finish(0)

</stderr_txt>
]]>

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