Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:43:46 (898483): wrapper (7.7.26015): starting
10:43:46 (898483): wrapper: running run_atlas (--nthreads 4)
[2025-11-26 10:43:46] Arguments: --nthreads 4
[2025-11-26 10:43:46] Threads: 4
[2025-11-26 10:43:46] Checking for CVMFS
[2025-11-26 10:43:46] No cvmfs_config command found, will try listing directly
[2025-11-26 10:43:46] CVMFS is ok
[2025-11-26 10:43:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 10:43:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 10:43:46] Further information can be found at the LHC@home message board.
[2025-11-26 10:43:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 10:43:46] Checking for apptainer binary...
[2025-11-26 10:43:46] which: no apptainer in ((null))
[2025-11-26 10:43:46] apptainer is not installed, using version from CVMFS
[2025-11-26 10:43:46] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 10:43:46] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot128/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2025-11-26 10:43:46] apptainer works
[2025-11-26 10:43:47] Set ATHENA_PROC_NUMBER=4
[2025-11-26 10:43:47] Set ATHENA_CORE_NUMBER=4
[2025-11-26 10:43:47] Starting ATLAS job with PandaID=6893852161
[2025-11-26 10:43:47] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot128/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 02:03:37]  *** The last 200 lines of the pilot log: ***
[2025-11-27 02:03:37] 2025-11-27 01:02:34,280 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:03:37] 2025-11-27 01:02:36,051 | INFO     | time since job start (55115s) is within the limit (172800.0s)
[2025-11-27 02:03:37] 2025-11-27 01:02:36,218 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 02:03:37] 2025-11-27 01:02:36,240 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2721.8176328125
[2025-11-27 02:03:37] 2025-11-27 01:02:36,265 | INFO     | using path: /scratch/boinc/var/slot128/slots/0/PanDA_Pilot-6893852161/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 02:03:37] 2025-11-27 01:02:36,266 | INFO     | extracted standard info from prmon json
[2025-11-27 02:03:37] 2025-11-27 01:02:36,266 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 02:03:37] 2025-11-27 01:02:36,266 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 02:03:37] 2025-11-27 01:02:36,282 | INFO     | fitting pss+swap vs Time
[2025-11-27 02:03:37] 2025-11-27 01:02:36,284 | INFO     | sum of square deviations: 228318535289.99588
[2025-11-27 02:03:37] 2025-11-27 01:02:36,305 | INFO     | sum of deviations: 642984744985.6176
[2025-11-27 02:03:37] 2025-11-27 01:02:36,306 | INFO     | mean x: 1764177788.002215
[2025-11-27 02:03:37] 2025-11-27 01:02:36,306 | INFO     | mean y: 2270649.6910299
[2025-11-27 02:03:37] 2025-11-27 01:02:36,306 | INFO     | intersect: -4965961139.669078
[2025-11-27 02:03:37] 2025-11-27 01:02:36,307 | INFO     | chi2: 4.454326978385091
[2025-11-27 02:03:37] 2025-11-27 01:02:36,308 | INFO     | sum of square deviations: 224546827972.49548
[2025-11-27 02:03:37] 2025-11-27 01:02:36,328 | INFO     | sum of deviations: 830518463418.0188
[2025-11-27 02:03:37] 2025-11-27 01:02:36,328 | INFO     | mean x: 1764177635.502227
[2025-11-27 02:03:37] 2025-11-27 01:02:36,328 | INFO     | mean y: 2278229.241648107
[2025-11-27 02:03:37] 2025-11-27 01:02:36,329 | INFO     | intersect: -6522784325.697725
[2025-11-27 02:03:37] 2025-11-27 01:02:36,330 | INFO     | chi2: 2.3501981361974695
[2025-11-27 02:03:37] 2025-11-27 01:02:36,330 | INFO     | current chi2=2.3501981361974695 (change=47.23786224940474 %)
[2025-11-27 02:03:37] 2025-11-27 01:02:36,331 | INFO     | sum of square deviations: 220816888879.99567
[2025-11-27 02:03:37] 2025-11-27 01:02:36,349 | INFO     | sum of deviations: 882523555241.1484
[2025-11-27 02:03:37] 2025-11-27 01:02:36,350 | INFO     | mean x: 1764177483.0022397
[2025-11-27 02:03:37] 2025-11-27 01:02:36,350 | INFO     | mean y: 2280351.926091825
[2025-11-27 02:03:37] 2025-11-27 01:02:36,350 | INFO     | intersect: -7048485521.429002
[2025-11-27 02:03:37] 2025-11-27 01:02:36,351 | INFO     | chi2: 2.089804382247918
[2025-11-27 02:03:37] 2025-11-27 01:02:36,351 | INFO     | current chi2=2.089804382247918 (change=11.079651112772067 %)
[2025-11-27 02:03:37] 2025-11-27 01:02:36,351 | INFO     | right removable region: 892
[2025-11-27 02:03:37] 2025-11-27 01:02:36,352 | INFO     | sum of square deviations: 224546826752.49542
[2025-11-27 02:03:37] 2025-11-27 01:02:36,371 | INFO     | sum of deviations: 469200128294.92706
[2025-11-27 02:03:37] 2025-11-27 01:02:36,371 | INFO     | mean x: 1764177940.502227
[2025-11-27 02:03:37] 2025-11-27 01:02:36,371 | INFO     | mean y: 2277663.7873051227
[2025-11-27 02:03:37] 2025-11-27 01:02:36,372 | INFO     | intersect: -3684047046.252384
[2025-11-27 02:03:37] 2025-11-27 01:02:36,373 | INFO     | chi2: 2.4497317383637465
[2025-11-27 02:03:37] 2025-11-27 01:02:36,373 | INFO     | current chi2=2.4497317383637465 (change=45.00332485129117 %)
[2025-11-27 02:03:37] 2025-11-27 01:02:36,374 | INFO     | sum of square deviations: 220816886439.99567
[2025-11-27 02:03:37] 2025-11-27 01:02:36,393 | INFO     | sum of deviations: 446136443985.7582
[2025-11-27 02:03:37] 2025-11-27 01:02:36,393 | INFO     | mean x: 1764178093.0022397
[2025-11-27 02:03:37] 2025-11-27 01:02:36,393 | INFO     | mean y: 2278606.1209406494
[2025-11-27 02:03:37] 2025-11-27 01:02:36,393 | INFO     | intersect: -3562050887.2372155
[2025-11-27 02:03:37] 2025-11-27 01:02:36,394 | INFO     | chi2: 2.4381682840480305
[2025-11-27 02:03:37] 2025-11-27 01:02:36,394 | INFO     | current chi2=2.4381682840480305 (change=0.47202941181794555 %)
[2025-11-27 02:03:37] 2025-11-27 01:02:36,394 | INFO     | left removable region: 20
[2025-11-27 02:03:37] 2025-11-27 01:02:36,396 | INFO     | sum of square deviations: 205602000357.99585
[2025-11-27 02:03:37] 2025-11-27 01:02:36,413 | INFO     | sum of deviations: 654196061203.1033
[2025-11-27 02:03:37] 2025-11-27 01:02:36,413 | INFO     | mean x: 1764178062.5022936
[2025-11-27 02:03:37] 2025-11-27 01:02:36,414 | INFO     | mean y: 2289631.6983944955
[2025-11-27 02:03:37] 2025-11-27 01:02:36,414 | INFO     | intersect: -5611071803.211589
[2025-11-27 02:03:37] 2025-11-27 01:02:36,415 | INFO     | chi2: 0.06092171413351173
[2025-11-27 02:03:37] 2025-11-27 01:02:36,415 | INFO     | current memory leak: 3.18 B/s (using 872 data points, chi2=0.06)
[2025-11-27 02:03:37] 2025-11-27 01:02:36,417 | INFO     | could have reported an average CPU frequency of 2701 MHz (34 samples)
[2025-11-27 02:03:37] 2025-11-27 01:02:36,417 | INFO     | ..............................
[2025-11-27 02:03:37] 2025-11-27 01:02:36,417 | INFO     | . Timing measurements:
[2025-11-27 02:03:37] 2025-11-27 01:02:36,417 | INFO     | . get job = 0 s
[2025-11-27 02:03:37] 2025-11-27 01:02:36,417 | INFO     | . initial setup = 1 s
[2025-11-27 02:03:37] 2025-11-27 01:02:36,417 | INFO     | . payload setup = 9 s
[2025-11-27 02:03:37] 2025-11-27 01:02:36,417 | INFO     | . stage-in = 0 s
[2025-11-27 02:03:37] 2025-11-27 01:02:36,417 | INFO     | . payload execution = 55070 s
[2025-11-27 02:03:37] 2025-11-27 01:02:36,417 | INFO     | . stage-out = 2 s
[2025-11-27 02:03:37] 2025-11-27 01:02:36,417 | INFO     | . log creation = 0 s
[2025-11-27 02:03:37] 2025-11-27 01:02:36,418 | INFO     | ..............................
[2025-11-27 02:03:37] 2025-11-27 01:02:36,518 | INFO     | 
[2025-11-27 02:03:37] 2025-11-27 01:02:36,519 | INFO     | job summary report
[2025-11-27 02:03:37] 2025-11-27 01:02:36,519 | INFO     | --------------------------------------------------
[2025-11-27 02:03:37] 2025-11-27 01:02:36,519 | INFO     | PanDA job id: 6893852161
[2025-11-27 02:03:37] 2025-11-27 01:02:36,519 | INFO     | task id: 47523449
[2025-11-27 02:03:37] 2025-11-27 01:02:36,519 | INFO     | errors: (none)
[2025-11-27 02:03:37] 2025-11-27 01:02:36,519 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 02:03:37] 2025-11-27 01:02:36,519 | INFO     | pilot state: finished 
[2025-11-27 02:03:37] 2025-11-27 01:02:36,519 | INFO     | transexitcode: 0
[2025-11-27 02:03:37] 2025-11-27 01:02:36,519 | INFO     | exeerrorcode: 0
[2025-11-27 02:03:37] 2025-11-27 01:02:36,519 | INFO     | exeerrordiag: 
[2025-11-27 02:03:37] 2025-11-27 01:02:36,519 | INFO     | exitcode: 0
[2025-11-27 02:03:37] 2025-11-27 01:02:36,520 | INFO     | exitmsg: OK
[2025-11-27 02:03:37] 2025-11-27 01:02:36,520 | INFO     | cpuconsumptiontime: 220922 s
[2025-11-27 02:03:37] 2025-11-27 01:02:36,520 | INFO     | nevents: 1000
[2025-11-27 02:03:37] 2025-11-27 01:02:36,520 | INFO     | neventsw: 0
[2025-11-27 02:03:37] 2025-11-27 01:02:36,520 | INFO     | pid: 909857
[2025-11-27 02:03:37] 2025-11-27 01:02:36,520 | INFO     | pgrp: 909857
[2025-11-27 02:03:37] 2025-11-27 01:02:36,520 | INFO     | corecount: 4
[2025-11-27 02:03:37] 2025-11-27 01:02:36,520 | INFO     | event service: False
[2025-11-27 02:03:37] 2025-11-27 01:02:36,520 | INFO     | sizes: {0: 2284327, 7: 2284589, 11: 2284617, 55083: 2335925, 55084: 2335924, 55086: 2344998, 55087: 2345182, 55097: 2345428}
[2025-11-27 02:03:37] 2025-11-27 01:02:36,520 | INFO     | --------------------------------------------------
[2025-11-27 02:03:37] 2025-11-27 01:02:36,520 | INFO     | 
[2025-11-27 02:03:37] 2025-11-27 01:02:36,521 | INFO     | executing command: ls -lF /scratch/boinc/var/slot128/slots/0
[2025-11-27 02:03:37] 2025-11-27 01:02:36,552 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 02:03:37] 2025-11-27 01:02:36,552 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 02:03:37] 2025-11-27 01:02:36,552 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 02:03:37] 2025-11-27 01:02:36,553 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 02:03:37] 2025-11-27 01:02:36,553 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 02:03:37] 2025-11-27 01:02:36,553 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 02:03:37] 2025-11-27 01:02:36,553 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 02:03:37] 2025-11-27 01:02:36,553 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 02:03:37] 2025-11-27 01:02:36,553 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 02:03:37] 2025-11-27 01:02:36,553 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 02:03:37] 2025-11-27 01:02:36,553 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 02:03:37] 2025-11-27 01:02:36,553 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 02:03:37] 2025-11-27 01:02:36,554 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 02:03:37] 2025-11-27 01:02:36,554 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 02:03:37] 2025-11-27 01:02:36,554 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 02:03:37] 2025-11-27 01:02:36,554 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 02:03:37] 2025-11-27 01:02:36,554 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 02:03:37] 2025-11-27 01:02:36,554 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 02:03:37] 2025-11-27 01:02:36,554 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 02:03:37] 2025-11-27 01:02:36,554 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 02:03:37] 2025-11-27 01:02:36,554 | INFO     | job 6893852161 has completed (purged errors)
[2025-11-27 02:03:37] 2025-11-27 01:02:36,555 | INFO     | overall cleanup function is called
[2025-11-27 02:03:37] 2025-11-27 01:02:37,573 | INFO     | --- collectZombieJob: --- 10, [909857]
[2025-11-27 02:03:37] 2025-11-27 01:02:37,573 | INFO     | zombie collector waiting for pid 909857
[2025-11-27 02:03:37] 2025-11-27 01:02:37,573 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 02:03:37] 2025-11-27 01:02:37,573 | INFO     | collected zombie processes
[2025-11-27 02:03:37] 2025-11-27 01:02:37,573 | INFO     | will attempt to kill all subprocesses of pid=909857
[2025-11-27 02:03:37] 2025-11-27 01:02:38,401 | INFO     | process IDs to be killed: [909857] (in reverse order)
[2025-11-27 02:03:37] 2025-11-27 01:02:38,671 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 02:03:37] 2025-11-27 01:02:38,671 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 02:03:37] 2025-11-27 01:02:38,705 | INFO     | did not find any defunct processes belonging to 909857
[2025-11-27 02:03:37] 2025-11-27 01:02:38,736 | INFO     | did not find any defunct processes belonging to 909857
[2025-11-27 02:03:37] 2025-11-27 01:02:38,738 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 02:03:37] 2025-11-27 01:02:38,738 | INFO     | ready for new job
[2025-11-27 02:03:37] 2025-11-27 01:02:38,738 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 02:03:37] 2025-11-27 01:02:38,745 | INFO     | ***************************************
[2025-11-27 02:03:37] 2025-11-27 01:02:38,746 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 02:03:37] 2025-11-27 01:02:38,746 | INFO     | ***************************************
[2025-11-27 02:03:37] 2025-11-27 01:02:38,746 | INFO     | 
[2025-11-27 02:03:37] 2025-11-27 01:02:38,755 | INFO     | architecture information:
[2025-11-27 02:03:37] 2025-11-27 01:02:38,756 | INFO     | executing command: cat /etc/os-release
[2025-11-27 02:03:37] 2025-11-27 01:02:38,781 | INFO     | cat /etc/os-release:
[2025-11-27 02:03:37] NAME="CentOS Linux"
[2025-11-27 02:03:37] VERSION="7 (Core)"
[2025-11-27 02:03:37] ID="centos"
[2025-11-27 02:03:37] ID_LIKE="rhel fedora"
[2025-11-27 02:03:37] VERSION_ID="7"
[2025-11-27 02:03:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 02:03:37] ANSI_COLOR="0;31"
[2025-11-27 02:03:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 02:03:37] HOME_URL="https://www.centos.org/"
[2025-11-27 02:03:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 02:03:37] 
[2025-11-27 02:03:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 02:03:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 02:03:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 02:03:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 02:03:37] 
[2025-11-27 02:03:37] 2025-11-27 01:02:38,781 | INFO     | ***************************************
[2025-11-27 02:03:37] 2025-11-27 01:02:39,284 | INFO     | executing command: df -mP /scratch/boinc/var/slot128/slots/0
[2025-11-27 02:03:37] 2025-11-27 01:02:39,310 | INFO     | sufficient remaining disk space (3291658321920 B)
[2025-11-27 02:03:37] 2025-11-27 01:02:39,310 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 02:03:37] 2025-11-27 01:02:39,311 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 02:03:37] 2025-11-27 01:02:39,311 | INFO     | update_server=False
[2025-11-27 02:03:37] 2025-11-27 01:02:39,311 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 02:03:37] 2025-11-27 01:02:39,311 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 02:03:37] 2025-11-27 01:02:39,952 | INFO     | all payload control threads have been joined
[2025-11-27 02:03:37] 2025-11-27 01:02:40,307 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:03:37] 2025-11-27 01:02:40,307 | INFO     | aborting loop
[2025-11-27 02:03:37] 2025-11-27 01:02:40,316 | INFO     | [job] retrieve thread has finished
[2025-11-27 02:03:37] 2025-11-27 01:02:40,335 | INFO     | all data control threads have been joined
[2025-11-27 02:03:37] 2025-11-27 01:02:40,368 | INFO     | [data] copytool_in thread has finished
[2025-11-27 02:03:37] 2025-11-27 01:02:40,537 | INFO     | [payload] failed_post thread has finished
[2025-11-27 02:03:37] 2025-11-27 01:02:40,560 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 02:03:37] 2025-11-27 01:02:40,737 | INFO     | all job control threads have been joined
[2025-11-27 02:03:37] 2025-11-27 01:02:40,750 | INFO     | [payload] validate_post thread has finished
[2025-11-27 02:03:37] 2025-11-27 01:02:40,957 | INFO     | [payload] control thread has finished
[2025-11-27 02:03:37] 2025-11-27 01:02:41,303 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 02:03:37] 2025-11-27 01:02:41,312 | INFO     | [job] job monitor thread has finished
[2025-11-27 02:03:37] 2025-11-27 01:02:41,317 | INFO     | [data] copytool_out thread has finished
[2025-11-27 02:03:37] 2025-11-27 01:02:41,340 | INFO     | [data] control thread has finished
[2025-11-27 02:03:37] 2025-11-27 01:02:41,349 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 02:03:37] 2025-11-27 01:02:41,528 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:03:37] 2025-11-27 01:02:41,742 | INFO     | [job] control thread has finished
[2025-11-27 02:03:37] 2025-11-27 01:02:41,812 | INFO     | [job] validate thread has finished
[2025-11-27 02:03:37] 2025-11-27 01:02:42,149 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 02:03:37] 2025-11-27 01:02:42,534 | INFO     | [job] queue monitor thread has finished
[2025-11-27 02:03:37] 2025-11-27 01:02:46,156 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 02:03:37] 2025-11-27 01:02:49,826 | INFO     | job.realtimelogging is not enabled
[2025-11-27 02:03:37] 2025-11-27 01:02:50,831 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 02:03:37] 2025-11-27 01:03:10,141 | INFO     | PID=902474 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 02:03:37] 2025-11-27 01:03:10,141 | INFO     | .. there are 7 such processes running
[2025-11-27 02:03:37] 2025-11-27 01:03:10,142 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 02:03:37] 2025-11-27 01:03:10,142 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 02:03:37] 2025-11-27 01:03:10,142 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 02:03:37] 2025-11-27 01:03:30,088 | INFO     | [monitor] cgroup control has ended
[2025-11-27 02:03:37] 2025-11-27 01:03:30,544 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23167391205184)>', '<ExcThread(monitor, started 23167152125696)>']
[2025-11-27 02:03:37] 2025-11-27 01:03:31,245 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 02:03:37] 2025-11-27 01:03:31,245 | INFO     | [monitor] control thread has ended
[2025-11-27 02:03:37] 2025-11-27 01:03:35,569 | INFO     | all workflow threads have been joined
[2025-11-27 02:03:37] 2025-11-27 01:03:35,569 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 02:03:37] 2025-11-27 01:03:35,569 | INFO     | traces error code: 0
[2025-11-27 02:03:37] 2025-11-27 01:03:35,570 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 02:03:37] 2025-11-27 01:03:35,734 [wrapper] ==== pilot stdout END ====
[2025-11-27 02:03:37] 2025-11-27 01:03:35,738 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 02:03:37] 2025-11-27 01:03:35,742 [wrapper] pilotpid: 902474
[2025-11-27 02:03:37] 2025-11-27 01:03:35,748 [wrapper] Pilot exit status: 0
[2025-11-27 02:03:37] 2025-11-27 01:03:35,763 [wrapper] pandaids: 6893852161
[2025-11-27 02:03:37] 2025-11-27 01:03:35,941 [wrapper] cleanup supervisor_pilot 2140782 902475
[2025-11-27 02:03:37] 2025-11-27 01:03:35,945 [wrapper] Test setup, not cleaning
[2025-11-27 02:03:37] 2025-11-27 01:03:35,949 [wrapper] apfmon messages muted
[2025-11-27 02:03:37] 2025-11-27 01:03:35,953 [wrapper] ==== wrapper stdout END ====
[2025-11-27 02:03:37] 2025-11-27 01:03:35,957 [wrapper] ==== wrapper stderr END ====
[2025-11-27 02:03:37]  *** Error codes and diagnostics ***
[2025-11-27 02:03:37]     "exeErrorCode": 0,
[2025-11-27 02:03:37]     "exeErrorDiag": "",
[2025-11-27 02:03:37]     "pilotErrorCode": 0,
[2025-11-27 02:03:37]     "pilotErrorDiag": "",
[2025-11-27 02:03:37]  *** Listing of results directory ***
[2025-11-27 02:03:37] total 1324180
[2025-11-27 02:03:37] -rw-r--r-- 1 boinc boinc    576529 Nov 20 12:09 pilot3.tar.gz
[2025-11-27 02:03:37] -rw-r--r-- 1 boinc boinc      5112 Nov 20 12:48 queuedata.json
[2025-11-27 02:03:37] -rwx------ 1 boinc boinc     36292 Nov 20 12:48 runpilot2-wrapper.sh
[2025-11-27 02:03:37] -rw-r--r-- 1 boinc boinc       100 Nov 26 10:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 02:03:37] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 10:43 run_atlas
[2025-11-27 02:03:37] -rw-r--r-- 1 boinc boinc       105 Nov 26 10:43 job.xml
[2025-11-27 02:03:37] -rw-r--r-- 1 boinc boinc      6687 Nov 26 10:43 init_data.xml
[2025-11-27 02:03:37] -rw-r--r-- 2 boinc boinc 410138097 Nov 26 10:43 EVNT.47493127._000367.pool.root.1
[2025-11-27 02:03:37] -rw-r--r-- 2 boinc boinc     15847 Nov 26 10:43 start_atlas.sh
[2025-11-27 02:03:37] drwxrwx--x 2 boinc boinc      4096 Nov 26 10:43 shared
[2025-11-27 02:03:37] -rw-r--r-- 2 boinc boinc    590101 Nov 26 10:43 input.tar.gz
[2025-11-27 02:03:37] -rw-r--r-- 1 boinc boinc         0 Nov 26 10:43 boinc_lockfile
[2025-11-27 02:03:37] -rw-r--r-- 1 boinc boinc      2786 Nov 26 10:43 pandaJob.out
[2025-11-27 02:03:37] -rw------- 1 boinc boinc    991827 Nov 26 10:44 agis_schedconf.cvmfs.json
[2025-11-27 02:03:37] drwx------ 5 boinc boinc      4096 Nov 26 10:44 pilot3
[2025-11-27 02:03:37] -rw-r--r-- 1 boinc boinc       531 Nov 27 01:53 boinc_task_state.xml
[2025-11-27 02:03:37] -rw------- 1 boinc boinc 923409571 Nov 27 02:01 HITS.47523449._003668.pool.root.1
[2025-11-27 02:03:37] -rw------- 1 boinc boinc      1042 Nov 27 02:02 memory_monitor_summary.json
[2025-11-27 02:03:37] -rw------- 1 boinc boinc   1516240 Nov 27 02:02 agis_ddmendpoints.agis.ALL.json
[2025-11-27 02:03:37] -rw------- 1 boinc boinc   1663925 Nov 27 02:02 log.47523449._003668.job.log.tgz.1
[2025-11-27 02:03:37] -rw------- 1 boinc boinc      7924 Nov 27 02:02 heartbeat.json
[2025-11-27 02:03:37] -rw------- 1 boinc boinc        95 Nov 27 02:03 pilot_heartbeat.json
[2025-11-27 02:03:37] -rw------- 1 boinc boinc      4906 Nov 27 02:03 pilotlog.txt
[2025-11-27 02:03:37] -rw------- 1 boinc boinc   7582150 Nov 27 02:03 log.47523449._003668.job.log.1
[2025-11-27 02:03:37] -rw------- 1 boinc boinc       353 Nov 27 02:03 output.list
[2025-11-27 02:03:37] -rw-r--r-- 1 boinc boinc       620 Nov 27 02:03 runtime_log
[2025-11-27 02:03:37] -rw------- 1 boinc boinc   9267200 Nov 27 02:03 result.tar.gz
[2025-11-27 02:03:37] -rw------- 1 boinc boinc       670 Nov 27 02:03 s9YMDmpKIg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwfHKDmx7f6jn.diag
[2025-11-27 02:03:37] -rw-r--r-- 1 boinc boinc      9223 Nov 27 02:03 runtime_log.err
[2025-11-27 02:03:37] -rw-r--r-- 1 boinc boinc        28 Nov 27 02:03 wrapper_checkpoint.txt
[2025-11-27 02:03:37] -rw-r--r-- 1 boinc boinc      8192 Nov 27 02:03 boinc_mmap_file
[2025-11-27 02:03:37] -rw-r--r-- 1 boinc boinc     21094 Nov 27 02:03 stderr.txt
[2025-11-27 02:03:37] HITS file was successfully produced:
[2025-11-27 02:03:37] -rw------- 1 boinc boinc 923409571 Nov 27 02:01 shared/HITS.pool.root.1
[2025-11-27 02:03:37]  *** Contents of shared directory: ***
[2025-11-27 02:03:37] total 1311952
[2025-11-27 02:03:37] -rw-r--r-- 2 boinc boinc 410138097 Nov 26 10:43 ATLAS.root_0
[2025-11-27 02:03:37] -rw-r--r-- 2 boinc boinc     15847 Nov 26 10:43 start_atlas.sh
[2025-11-27 02:03:37] -rw-r--r-- 2 boinc boinc    590101 Nov 26 10:43 input.tar.gz
[2025-11-27 02:03:37] -rw------- 1 boinc boinc 923409571 Nov 27 02:01 HITS.pool.root.1
[2025-11-27 02:03:37] -rw------- 1 boinc boinc   9267200 Nov 27 02:03 result.tar.gz
02:03:38 (898483): run_atlas exited; CPU time 223909.317246
02:03:38 (898483): called boinc_finish(0)

</stderr_txt>
]]>

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