Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:12:17 (30934): wrapper (7.7.26015): starting
22:12:17 (30934): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 22:12:17] Arguments: --nthreads 8
[2025-11-20 22:12:17] Threads: 8
[2025-11-20 22:12:17] Checking for CVMFS
[2025-11-20 22:12:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 22:12:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 22:12:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 22:12:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 22:12:17] 2.11.2.0 6491 1191 59364 153105 2 81 10767782 18432000 1080 130560 0 1097874 99.992 38535 3920 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 22:12:17] CVMFS is ok
[2025-11-20 22:12:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 22:12:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 22:12:17] Further information can be found at the LHC@home message board.
[2025-11-20 22:12:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 22:12:17] Checking for apptainer binary...
[2025-11-20 22:12:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 22:12:17] Running /usr/bin/apptainer --version
[2025-11-20 22:12:17] apptainer version 1.3.2-1.el7
[2025-11-20 22:12:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 22:12:18] c-206-29.aglt2.org
[2025-11-20 22:12:18] apptainer works
[2025-11-20 22:12:18] Set ATHENA_PROC_NUMBER=8
[2025-11-20 22:12:18] Set ATHENA_CORE_NUMBER=8
[2025-11-20 22:12:18] Starting ATLAS job with PandaID=6893861622
[2025-11-20 22:12:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 18:10:36]  *** The last 200 lines of the pilot log: ***
[2025-11-21 18:10:36] 2025-11-21 23:09:38,460 | INFO     | monitor loop #5121: job 0:6893861622 is in state 'finished'
[2025-11-21 18:10:36] 2025-11-21 23:09:38,460 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 18:10:36] 2025-11-21 23:09:39,459 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-21 18:10:36] 2025-11-21 23:09:39,464 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2483.4583333333335
[2025-11-21 18:10:36] 2025-11-21 23:09:39,468 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6893861622/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 18:10:36] 2025-11-21 23:09:39,469 | INFO     | extracted standard info from prmon json
[2025-11-21 18:10:36] 2025-11-21 23:09:39,469 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 18:10:36] 2025-11-21 23:09:39,469 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 18:10:36] 2025-11-21 23:09:39,489 | INFO     | fitting pss+swap vs Time
[2025-11-21 18:10:36] 2025-11-21 23:09:39,490 | INFO     | sum of square deviations: 505599428819.9693
[2025-11-21 18:10:36] 2025-11-21 23:09:39,516 | INFO     | sum of deviations: 2518430572964.662
[2025-11-21 18:10:36] 2025-11-21 23:09:39,516 | INFO     | mean x: 1763730645.6312659
[2025-11-21 18:10:36] 2025-11-21 23:09:39,516 | INFO     | mean y: 2885110.079864061
[2025-11-21 18:10:36] 2025-11-21 23:09:39,516 | INFO     | intersect: -8782396136.774754
[2025-11-21 18:10:36] 2025-11-21 23:09:39,517 | INFO     | chi2: 4.736232257983223
[2025-11-21 18:10:36] 2025-11-21 23:09:39,519 | INFO     | sum of square deviations: 499183479317.96844
[2025-11-21 18:10:36] 2025-11-21 23:09:39,544 | INFO     | sum of deviations: 2835822398678.8384
[2025-11-21 18:10:36] 2025-11-21 23:09:39,544 | INFO     | mean x: 1763730493.133959
[2025-11-21 18:10:36] 2025-11-21 23:09:39,544 | INFO     | mean y: 2892648.765358362
[2025-11-21 18:10:36] 2025-11-21 23:09:39,544 | INFO     | intersect: -10016722672.831118
[2025-11-21 18:10:36] 2025-11-21 23:09:39,545 | INFO     | chi2: 2.4241933074456132
[2025-11-21 18:10:36] 2025-11-21 23:09:39,545 | INFO     | current chi2=2.4241933074456132 (change=48.81599601963185 %)
[2025-11-21 18:10:36] 2025-11-21 23:09:39,546 | INFO     | sum of square deviations: 492822042465.95044
[2025-11-21 18:10:36] 2025-11-21 23:09:39,571 | INFO     | sum of deviations: 2876899596888.648
[2025-11-21 18:10:36] 2025-11-21 23:09:39,572 | INFO     | mean x: 1763730340.6366751
[2025-11-21 18:10:36] 2025-11-21 23:09:39,572 | INFO     | mean y: 2893630.2279348755
[2025-11-21 18:10:36] 2025-11-21 23:09:39,572 | INFO     | intersect: -10293064481.971361
[2025-11-21 18:10:36] 2025-11-21 23:09:39,573 | INFO     | chi2: 2.269589877320129
[2025-11-21 18:10:36] 2025-11-21 23:09:39,573 | INFO     | current chi2=2.269589877320129 (change=6.377520705574051 %)
[2025-11-21 18:10:36] 2025-11-21 23:09:39,573 | INFO     | right removable region: 1166
[2025-11-21 18:10:36] 2025-11-21 23:09:39,574 | INFO     | sum of square deviations: 499183026087.9685
[2025-11-21 18:10:36] 2025-11-21 23:09:39,601 | INFO     | sum of deviations: 2230526208949.1416
[2025-11-21 18:10:36] 2025-11-21 23:09:39,601 | INFO     | mean x: 1763730798.133959
[2025-11-21 18:10:36] 2025-11-21 23:09:39,601 | INFO     | mean y: 2891944.0819112626
[2025-11-21 18:10:36] 2025-11-21 23:09:39,601 | INFO     | intersect: -7878080695.551285
[2025-11-21 18:10:36] 2025-11-21 23:09:39,603 | INFO     | chi2: 2.8248067838876114
[2025-11-21 18:10:36] 2025-11-21 23:09:39,603 | INFO     | current chi2=2.8248067838876114 (change=40.35751141371458 %)
[2025-11-21 18:10:36] 2025-11-21 23:09:39,605 | INFO     | sum of square deviations: 492821350726.76227
[2025-11-21 18:10:36] 2025-11-21 23:09:39,640 | INFO     | sum of deviations: 2135939557026.4675
[2025-11-21 18:10:36] 2025-11-21 23:09:39,640 | INFO     | mean x: 1763730950.6341045
[2025-11-21 18:10:36] 2025-11-21 23:09:39,641 | INFO     | mean y: 2894211.1088260496
[2025-11-21 18:10:36] 2025-11-21 23:09:39,641 | INFO     | intersect: -7641301195.311303
[2025-11-21 18:10:36] 2025-11-21 23:09:39,642 | INFO     | chi2: 2.737265158511641
[2025-11-21 18:10:36] 2025-11-21 23:09:39,642 | INFO     | current chi2=2.737265158511641 (change=3.0990305558347666 %)
[2025-11-21 18:10:36] 2025-11-21 23:09:39,642 | INFO     | left removable region: 20
[2025-11-21 18:10:36] 2025-11-21 23:09:39,643 | INFO     | sum of square deviations: 466692862070.38074
[2025-11-21 18:10:36] 2025-11-21 23:09:39,648 | INFO     | time since job start (71829s) is within the limit (172800.0s)
[2025-11-21 18:10:36] 2025-11-21 23:09:39,685 | INFO     | sum of deviations: 2352000127928.99
[2025-11-21 18:10:36] 2025-11-21 23:09:39,685 | INFO     | mean x: 1763730920.1404886
[2025-11-21 18:10:36] 2025-11-21 23:09:39,685 | INFO     | mean y: 2906187.9441535776
[2025-11-21 18:10:36] 2025-11-21 23:09:39,686 | INFO     | intersect: -8885799183.292383
[2025-11-21 18:10:36] 2025-11-21 23:09:39,687 | INFO     | chi2: 0.20149197842407665
[2025-11-21 18:10:36] 2025-11-21 23:09:39,688 | INFO     | current memory leak: 5.04 B/s (using 1146 data points, chi2=0.20)
[2025-11-21 18:10:36] 2025-11-21 23:09:39,689 | INFO     | could have reported an average CPU frequency of 2599 MHz (43 samples)
[2025-11-21 18:10:36] 2025-11-21 23:09:39,689 | INFO     | ..............................
[2025-11-21 18:10:36] 2025-11-21 23:09:39,689 | INFO     | . Timing measurements:
[2025-11-21 18:10:36] 2025-11-21 23:09:39,689 | INFO     | . get job = 0 s
[2025-11-21 18:10:36] 2025-11-21 23:09:39,690 | INFO     | . initial setup = 2 s
[2025-11-21 18:10:36] 2025-11-21 23:09:39,690 | INFO     | . payload setup = 6 s
[2025-11-21 18:10:36] 2025-11-21 23:09:39,690 | INFO     | . stage-in = 0 s
[2025-11-21 18:10:36] 2025-11-21 23:09:39,690 | INFO     | . payload execution = 71792 s
[2025-11-21 18:10:36] 2025-11-21 23:09:39,690 | INFO     | . stage-out = 4 s
[2025-11-21 18:10:36] 2025-11-21 23:09:39,690 | INFO     | . log creation = 0 s
[2025-11-21 18:10:36] 2025-11-21 23:09:39,691 | INFO     | ..............................
[2025-11-21 18:10:36] 2025-11-21 23:09:39,855 | INFO     | 
[2025-11-21 18:10:36] 2025-11-21 23:09:39,856 | INFO     | job summary report
[2025-11-21 18:10:36] 2025-11-21 23:09:39,856 | INFO     | --------------------------------------------------
[2025-11-21 18:10:36] 2025-11-21 23:09:39,856 | INFO     | PanDA job id: 6893861622
[2025-11-21 18:10:36] 2025-11-21 23:09:39,856 | INFO     | task id: 47523449
[2025-11-21 18:10:36] 2025-11-21 23:09:39,856 | INFO     | errors: (none)
[2025-11-21 18:10:36] 2025-11-21 23:09:39,856 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 18:10:36] 2025-11-21 23:09:39,857 | INFO     | pilot state: finished 
[2025-11-21 18:10:36] 2025-11-21 23:09:39,857 | INFO     | transexitcode: 0
[2025-11-21 18:10:36] 2025-11-21 23:09:39,857 | INFO     | exeerrorcode: 0
[2025-11-21 18:10:36] 2025-11-21 23:09:39,857 | INFO     | exeerrordiag: 
[2025-11-21 18:10:36] 2025-11-21 23:09:39,857 | INFO     | exitcode: 0
[2025-11-21 18:10:36] 2025-11-21 23:09:39,857 | INFO     | exitmsg: OK
[2025-11-21 18:10:36] 2025-11-21 23:09:39,858 | INFO     | cpuconsumptiontime: 553045 s
[2025-11-21 18:10:36] 2025-11-21 23:09:39,858 | INFO     | nevents: 1000
[2025-11-21 18:10:36] 2025-11-21 23:09:39,858 | INFO     | neventsw: 0
[2025-11-21 18:10:36] 2025-11-21 23:09:39,858 | INFO     | pid: 11664
[2025-11-21 18:10:36] 2025-11-21 23:09:39,858 | INFO     | pgrp: 11664
[2025-11-21 18:10:36] 2025-11-21 23:09:39,858 | INFO     | corecount: 8
[2025-11-21 18:10:36] 2025-11-21 23:09:39,859 | INFO     | event service: False
[2025-11-21 18:10:36] 2025-11-21 23:09:39,859 | INFO     | sizes: {0: 2298807, 1: 2298807, 4: 2299097, 11: 2299125, 71803: 2356199, 71808: 2365193, 71809: 2365377, 71814: 2365623}
[2025-11-21 18:10:36] 2025-11-21 23:09:39,859 | INFO     | --------------------------------------------------
[2025-11-21 18:10:36] 2025-11-21 23:09:39,859 | INFO     | 
[2025-11-21 18:10:36] 2025-11-21 23:09:39,859 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-21 18:10:36] 2025-11-21 23:09:39,884 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 18:10:36] 2025-11-21 23:09:39,885 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 18:10:36] 2025-11-21 23:09:39,885 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 18:10:36] 2025-11-21 23:09:39,885 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 18:10:36] 2025-11-21 23:09:39,885 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 18:10:36] 2025-11-21 23:09:39,886 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 18:10:36] 2025-11-21 23:09:39,886 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 18:10:36] 2025-11-21 23:09:39,886 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 18:10:36] 2025-11-21 23:09:39,886 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 18:10:36] 2025-11-21 23:09:39,886 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 18:10:36] 2025-11-21 23:09:39,887 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 18:10:36] 2025-11-21 23:09:39,887 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 18:10:36] 2025-11-21 23:09:39,887 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 18:10:36] 2025-11-21 23:09:39,887 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 18:10:36] 2025-11-21 23:09:39,887 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 18:10:36] 2025-11-21 23:09:39,887 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 18:10:36] 2025-11-21 23:09:39,888 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 18:10:36] 2025-11-21 23:09:39,888 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 18:10:36] 2025-11-21 23:09:39,888 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 18:10:36] 2025-11-21 23:09:39,888 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 18:10:36] 2025-11-21 23:09:39,888 | INFO     | job 6893861622 has completed (purged errors)
[2025-11-21 18:10:36] 2025-11-21 23:09:39,889 | INFO     | overall cleanup function is called
[2025-11-21 18:10:36] 2025-11-21 23:09:40,904 | INFO     | --- collectZombieJob: --- 10, [11664]
[2025-11-21 18:10:36] 2025-11-21 23:09:40,905 | INFO     | zombie collector waiting for pid 11664
[2025-11-21 18:10:36] 2025-11-21 23:09:40,905 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 18:10:36] 2025-11-21 23:09:40,905 | INFO     | collected zombie processes
[2025-11-21 18:10:36] 2025-11-21 23:09:40,905 | INFO     | will attempt to kill all subprocesses of pid=11664
[2025-11-21 18:10:36] 2025-11-21 23:09:41,044 | INFO     | process IDs to be killed: [11664] (in reverse order)
[2025-11-21 18:10:36] 2025-11-21 23:09:41,111 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 18:10:36] 2025-11-21 23:09:41,111 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 18:10:36] 2025-11-21 23:09:41,117 | INFO     | did not find any defunct processes belonging to 11664
[2025-11-21 18:10:36] 2025-11-21 23:09:41,122 | INFO     | did not find any defunct processes belonging to 11664
[2025-11-21 18:10:36] 2025-11-21 23:09:41,124 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 18:10:36] 2025-11-21 23:09:41,124 | INFO     | ready for new job
[2025-11-21 18:10:36] 2025-11-21 23:09:41,124 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 18:10:36] 2025-11-21 23:09:41,129 | INFO     | ***************************************
[2025-11-21 18:10:36] 2025-11-21 23:09:41,130 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 18:10:36] 2025-11-21 23:09:41,130 | INFO     | ***************************************
[2025-11-21 18:10:36] 2025-11-21 23:09:41,130 | INFO     | 
[2025-11-21 18:10:36] 2025-11-21 23:09:41,131 | INFO     | architecture information:
[2025-11-21 18:10:36] 2025-11-21 23:09:41,132 | INFO     | executing command: cat /etc/os-release
[2025-11-21 18:10:36] 2025-11-21 23:09:41,147 | INFO     | cat /etc/os-release:
[2025-11-21 18:10:36] NAME="CentOS Linux"
[2025-11-21 18:10:36] VERSION="7 (Core)"
[2025-11-21 18:10:36] ID="centos"
[2025-11-21 18:10:36] ID_LIKE="rhel fedora"
[2025-11-21 18:10:36] VERSION_ID="7"
[2025-11-21 18:10:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 18:10:36] ANSI_COLOR="0;31"
[2025-11-21 18:10:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 18:10:36] HOME_URL="https://www.centos.org/"
[2025-11-21 18:10:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 18:10:36] 
[2025-11-21 18:10:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 18:10:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 18:10:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 18:10:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 18:10:36] 
[2025-11-21 18:10:36] 2025-11-21 23:09:41,148 | INFO     | ***************************************
[2025-11-21 18:10:36] 2025-11-21 23:09:41,651 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-21 18:10:36] 2025-11-21 23:09:41,669 | INFO     | sufficient remaining disk space (25945964544 B)
[2025-11-21 18:10:36] 2025-11-21 23:09:41,669 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 18:10:36] 2025-11-21 23:09:41,670 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 18:10:36] 2025-11-21 23:09:41,670 | INFO     | update_server=False
[2025-11-21 18:10:36] 2025-11-21 23:09:41,670 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 18:10:36] 2025-11-21 23:09:41,670 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 18:10:36] 2025-11-21 23:09:41,972 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 18:10:36] 2025-11-21 23:09:41,973 | INFO     | aborting loop
[2025-11-21 18:10:36] 2025-11-21 23:09:42,011 | INFO     | all data control threads have been joined
[2025-11-21 18:10:36] 2025-11-21 23:09:42,311 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 18:10:36] 2025-11-21 23:09:42,567 | INFO     | all job control threads have been joined
[2025-11-21 18:10:36] 2025-11-21 23:09:42,645 | INFO     | all payload control threads have been joined
[2025-11-21 18:10:36] 2025-11-21 23:09:42,676 | INFO     | [job] retrieve thread has finished
[2025-11-21 18:10:36] 2025-11-21 23:09:42,676 | INFO     | [job] queue monitor thread has finished
[2025-11-21 18:10:36] 2025-11-21 23:09:42,761 | INFO     | [job] validate thread has finished
[2025-11-21 18:10:36] 2025-11-21 23:09:42,838 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 18:10:36] 2025-11-21 23:09:42,978 | INFO     | [job] job monitor thread has finished
[2025-11-21 18:10:36] 2025-11-21 23:09:43,017 | INFO     | [data] control thread has finished
[2025-11-21 18:10:36] 2025-11-21 23:09:43,211 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 18:10:36] 2025-11-21 23:09:43,421 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 18:10:36] 2025-11-21 23:09:43,568 | INFO     | [payload] failed_post thread has finished
[2025-11-21 18:10:36] 2025-11-21 23:09:43,573 | INFO     | [job] control thread has finished
[2025-11-21 18:10:36] 2025-11-21 23:09:43,651 | INFO     | [payload] control thread has finished
[2025-11-21 18:10:36] 2025-11-21 23:09:43,968 | INFO     | [data] copytool_in thread has finished
[2025-11-21 18:10:36] 2025-11-21 23:09:43,968 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 18:10:36] 2025-11-21 23:09:44,275 | INFO     | [payload] validate_post thread has finished
[2025-11-21 18:10:36] 2025-11-21 23:09:44,316 | INFO     | [data] copytool_out thread has finished
[2025-11-21 18:10:36] 2025-11-21 23:09:44,941 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 18:10:36] 2025-11-21 23:09:48,944 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 18:10:36] 2025-11-21 23:10:12,909 | INFO     | PID=4056 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-21 18:10:36] 2025-11-21 23:10:12,909 | INFO     | .. there are 3 such processes running
[2025-11-21 18:10:36] 2025-11-21 23:10:12,909 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 18:10:36] 2025-11-21 23:10:12,909 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 18:10:36] 2025-11-21 23:10:12,910 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 18:10:36] 2025-11-21 23:10:29,364 | INFO     | [monitor] cgroup control has ended
[2025-11-21 18:10:36] 2025-11-21 23:10:31,315 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139740320945984)>', '<ExcThread(monitor, started 139739428542208)>']
[2025-11-21 18:10:36] 2025-11-21 23:10:32,002 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 18:10:36] 2025-11-21 23:10:32,003 | INFO     | [monitor] control thread has ended
[2025-11-21 18:10:36] 2025-11-21 23:10:36,341 | INFO     | all workflow threads have been joined
[2025-11-21 18:10:36] 2025-11-21 23:10:36,342 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 18:10:36] 2025-11-21 23:10:36,342 | INFO     | traces error code: 0
[2025-11-21 18:10:36] 2025-11-21 23:10:36,342 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 18:10:36] 2025-11-21 23:10:36,459 [wrapper] ==== pilot stdout END ====
[2025-11-21 18:10:36] 2025-11-21 23:10:36,461 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 18:10:36] 2025-11-21 23:10:36,463 [wrapper] pilotpid: 4056
[2025-11-21 18:10:36] 2025-11-21 23:10:36,466 [wrapper] Pilot exit status: 0
[2025-11-21 18:10:36] 2025-11-21 23:10:36,474 [wrapper] pandaids: 6893861622
[2025-11-21 18:10:36] 2025-11-21 23:10:36,509 [wrapper] cleanup supervisor_pilot 13405 4057
[2025-11-21 18:10:36] 2025-11-21 23:10:36,511 [wrapper] Test setup, not cleaning
[2025-11-21 18:10:36] 2025-11-21 23:10:36,513 [wrapper] apfmon messages muted
[2025-11-21 18:10:36] 2025-11-21 23:10:36,515 [wrapper] ==== wrapper stdout END ====
[2025-11-21 18:10:36] 2025-11-21 23:10:36,517 [wrapper] ==== wrapper stderr END ====
[2025-11-21 18:10:36]  *** Error codes and diagnostics ***
[2025-11-21 18:10:36]     "exeErrorCode": 0,
[2025-11-21 18:10:36]     "exeErrorDiag": "",
[2025-11-21 18:10:36]     "pilotErrorCode": 0,
[2025-11-21 18:10:36]     "pilotErrorDiag": "",
[2025-11-21 18:10:36]  *** Listing of results directory ***
[2025-11-21 18:10:36] total 1315184
[2025-11-21 18:10:36] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 09:04 queuedata.json
[2025-11-21 18:10:36] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 09:04 pilot3.tar.gz
[2025-11-21 18:10:36] -rwx------ 1 boincer umatlas     36292 Nov 20 09:04 runpilot2-wrapper.sh
[2025-11-21 18:10:36] -rw-r--r-- 1 boincer umatlas       100 Nov 20 22:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 18:10:36] -rwxr-xr-x 1 boincer umatlas      7986 Nov 20 22:12 run_atlas
[2025-11-21 18:10:36] -rw-r--r-- 1 boincer umatlas       105 Nov 20 22:12 job.xml
[2025-11-21 18:10:36] -rw-r--r-- 2 boincer umatlas 407536704 Nov 20 22:12 EVNT.47493127._000579.pool.root.1
[2025-11-21 18:10:36] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 22:12 start_atlas.sh
[2025-11-21 18:10:36] drwxrwx--x 2 boincer umatlas      4096 Nov 20 22:12 shared
[2025-11-21 18:10:36] -rw-r--r-- 2 boincer umatlas    590097 Nov 20 22:12 input.tar.gz
[2025-11-21 18:10:36] -rw-r--r-- 1 boincer umatlas         0 Nov 20 22:12 boinc_lockfile
[2025-11-21 18:10:36] -rw-r--r-- 1 boincer umatlas      2786 Nov 20 22:12 pandaJob.out
[2025-11-21 18:10:36] -rw------- 1 boincer umatlas        57 Nov 20 22:12 setup.sh.local
[2025-11-21 18:10:36] -rw------- 1 boincer umatlas    989817 Nov 20 22:12 agis_schedconf.cvmfs.json
[2025-11-21 18:10:36] drwx------ 5 boincer umatlas      4096 Nov 20 22:12 pilot3
[2025-11-21 18:10:36] -rw-r--r-- 1 boincer umatlas       533 Nov 21 18:00 boinc_task_state.xml
[2025-11-21 18:10:36] -rw-r--r-- 1 boincer umatlas      5954 Nov 21 18:04 init_data.xml
[2025-11-21 18:10:36] -rw------- 1 boincer umatlas 910725868 Nov 21 18:08 HITS.47523449._005785.pool.root.1
[2025-11-21 18:10:36] -rw------- 1 boincer umatlas        95 Nov 21 18:09 pilot_heartbeat.json
[2025-11-21 18:10:36] -rw------- 1 boincer umatlas      1069 Nov 21 18:09 memory_monitor_summary.json
[2025-11-21 18:10:36] -rw------- 1 boincer umatlas   1526164 Nov 21 18:09 agis_ddmendpoints.agis.ALL.json
[2025-11-21 18:10:36] -rw------- 1 boincer umatlas   2332861 Nov 21 18:09 log.47523449._005785.job.log.tgz.1
[2025-11-21 18:10:36] -rw------- 1 boincer umatlas      8649 Nov 21 18:09 heartbeat.json
[2025-11-21 18:10:36] -rw-r--r-- 1 boincer umatlas        29 Nov 21 18:10 wrapper_checkpoint.txt
[2025-11-21 18:10:36] -rw-r--r-- 1 boincer umatlas      8192 Nov 21 18:10 boinc_mmap_file
[2025-11-21 18:10:36] -rw------- 1 boincer umatlas      4820 Nov 21 18:10 pilotlog.txt
[2025-11-21 18:10:36] -rw------- 1 boincer umatlas   9946071 Nov 21 18:10 log.47523449._005785.job.log.1
[2025-11-21 18:10:36] -rw------- 1 boincer umatlas       353 Nov 21 18:10 output.list
[2025-11-21 18:10:36] -rw-r--r-- 1 boincer umatlas       620 Nov 21 18:10 runtime_log
[2025-11-21 18:10:36] -rw------- 1 boincer umatlas  12298240 Nov 21 18:10 result.tar.gz
[2025-11-21 18:10:36] -rw-r--r-- 1 boincer umatlas      9343 Nov 21 18:10 runtime_log.err
[2025-11-21 18:10:36] -rw------- 1 boincer umatlas       668 Nov 21 18:10 2J5KDmXSKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmi1HKDmJ3ScBn.diag
[2025-11-21 18:10:36] -rw-r--r-- 1 boincer umatlas     21302 Nov 21 18:10 stderr.txt
[2025-11-21 18:10:36] HITS file was successfully produced:
[2025-11-21 18:10:36] -rw------- 1 boincer umatlas 910725868 Nov 21 18:08 shared/HITS.pool.root.1
[2025-11-21 18:10:36]  *** Contents of shared directory: ***
[2025-11-21 18:10:36] total 1299984
[2025-11-21 18:10:36] -rw-r--r-- 2 boincer umatlas 407536704 Nov 20 22:12 ATLAS.root_0
[2025-11-21 18:10:36] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 22:12 start_atlas.sh
[2025-11-21 18:10:36] -rw-r--r-- 2 boincer umatlas    590097 Nov 20 22:12 input.tar.gz
[2025-11-21 18:10:36] -rw------- 1 boincer umatlas 910725868 Nov 21 18:08 HITS.pool.root.1
[2025-11-21 18:10:36] -rw------- 1 boincer umatlas  12298240 Nov 21 18:10 result.tar.gz
18:10:38 (30934): run_atlas exited; CPU time 551599.044555
18:10:38 (30934): called boinc_finish(0)

</stderr_txt>
]]>

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