Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:27:14 (3064875): wrapper (7.7.26015): starting
09:27:14 (3064875): wrapper: running run_atlas (--nthreads 4)
[2025-11-22 09:27:14] Arguments: --nthreads 4
[2025-11-22 09:27:14] Threads: 4
[2025-11-22 09:27:14] Checking for CVMFS
[2025-11-22 09:27:14] No cvmfs_config command found, will try listing directly
[2025-11-22 09:27:14] CVMFS is ok
[2025-11-22 09:27:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 09:27:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 09:27:14] Further information can be found at the LHC@home message board.
[2025-11-22 09:27:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 09:27:14] Checking for apptainer binary...
[2025-11-22 09:27:14] which: no apptainer in ((null))
[2025-11-22 09:27:14] apptainer is not installed, using version from CVMFS
[2025-11-22 09:27:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 09:27:14] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-11-22 09:27:14] apptainer works
[2025-11-22 09:27:14] Set ATHENA_PROC_NUMBER=4
[2025-11-22 09:27:14] Set ATHENA_CORE_NUMBER=4
[2025-11-22 09:27:14] Starting ATLAS job with PandaID=6893861665
[2025-11-22 09:27:14] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 00:47:06]  *** The last 200 lines of the pilot log: ***
[2025-11-23 00:47:06] 2025-11-22 23:45:19,352 | INFO     | time since job start (55070s) is within the limit (172800.0s)
[2025-11-23 00:47:06] 2025-11-22 23:45:21,219 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 00:47:06] 2025-11-22 23:45:21,242 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2754.1340859374986
[2025-11-23 00:47:06] 2025-11-22 23:45:21,266 | INFO     | using path: /scratch/boinc/var/slot116/slots/0/PanDA_Pilot-6893861665/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 00:47:06] 2025-11-22 23:45:21,267 | INFO     | extracted standard info from prmon json
[2025-11-23 00:47:06] 2025-11-22 23:45:21,267 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 00:47:06] 2025-11-22 23:45:21,267 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 00:47:06] 2025-11-22 23:45:21,282 | INFO     | fitting pss+swap vs Time
[2025-11-23 00:47:06] 2025-11-22 23:45:21,284 | INFO     | sum of square deviations: 228318520892.0
[2025-11-23 00:47:06] 2025-11-22 23:45:21,302 | INFO     | sum of deviations: 643639351702.0001
[2025-11-23 00:47:06] 2025-11-22 23:45:21,302 | INFO     | mean x: 1763827595.0
[2025-11-23 00:47:06] 2025-11-22 23:45:21,302 | INFO     | mean y: 2279637.9534883723
[2025-11-23 00:47:06] 2025-11-22 23:45:21,302 | INFO     | intersect: -4970023289.223001
[2025-11-23 00:47:06] 2025-11-22 23:45:21,303 | INFO     | chi2: 4.094875544414522
[2025-11-23 00:47:06] 2025-11-22 23:45:21,304 | INFO     | sum of square deviations: 224546812964.5
[2025-11-23 00:47:06] 2025-11-22 23:45:21,322 | INFO     | sum of deviations: 836473033693.5
[2025-11-23 00:47:06] 2025-11-22 23:45:21,323 | INFO     | mean x: 1763827442.5
[2025-11-23 00:47:06] 2025-11-22 23:45:21,323 | INFO     | mean y: 2287427.7115812916
[2025-11-23 00:47:06] 2025-11-22 23:45:21,323 | INFO     | intersect: -6568253798.242388
[2025-11-23 00:47:06] 2025-11-22 23:45:21,324 | INFO     | chi2: 1.8727654362260937
[2025-11-23 00:47:06] 2025-11-22 23:45:21,324 | INFO     | current chi2=1.8727654362260937 (change=54.26563235162113 %)
[2025-11-23 00:47:06] 2025-11-22 23:45:21,325 | INFO     | sum of square deviations: 220816873262.0
[2025-11-23 00:47:06] 2025-11-22 23:45:21,342 | INFO     | sum of deviations: 844031704031.9996
[2025-11-23 00:47:06] 2025-11-22 23:45:21,342 | INFO     | mean x: 1763827290.0
[2025-11-23 00:47:06] 2025-11-22 23:45:21,342 | INFO     | mean y: 2287733.713325868
[2025-11-23 00:47:06] 2025-11-22 23:45:21,342 | INFO     | intersect: -6739616230.439201
[2025-11-23 00:47:06] 2025-11-22 23:45:21,343 | INFO     | chi2: 1.8186305242746588
[2025-11-23 00:47:06] 2025-11-22 23:45:21,343 | INFO     | current chi2=1.8186305242746588 (change=2.8906402747652686 %)
[2025-11-23 00:47:06] 2025-11-22 23:45:21,343 | INFO     | right removable region: 892
[2025-11-23 00:47:06] 2025-11-22 23:45:21,344 | INFO     | sum of square deviations: 224546812964.5
[2025-11-23 00:47:06] 2025-11-22 23:45:21,362 | INFO     | sum of deviations: 500547751849.9999
[2025-11-23 00:47:06] 2025-11-22 23:45:21,362 | INFO     | mean x: 1763827747.5
[2025-11-23 00:47:06] 2025-11-22 23:45:21,362 | INFO     | mean y: 2285408.9576837416
[2025-11-23 00:47:06] 2025-11-22 23:45:21,362 | INFO     | intersect: -3929545116.7392197
[2025-11-23 00:47:06] 2025-11-22 23:45:21,363 | INFO     | chi2: 2.3646905965995364
[2025-11-23 00:47:06] 2025-11-22 23:45:21,363 | INFO     | current chi2=2.3646905965995364 (change=42.25244281660738 %)
[2025-11-23 00:47:06] 2025-11-22 23:45:21,364 | INFO     | time since job start (55072s) is within the limit (172800.0s)
[2025-11-23 00:47:06] 2025-11-22 23:45:21,365 | INFO     | sum of square deviations: 220816873262.0
[2025-11-23 00:47:06] 2025-11-22 23:45:21,382 | INFO     | sum of deviations: 487532605921.99994
[2025-11-23 00:47:06] 2025-11-22 23:45:21,382 | INFO     | mean x: 1763827900.0
[2025-11-23 00:47:06] 2025-11-22 23:45:21,382 | INFO     | mean y: 2285940.7301231804
[2025-11-23 00:47:06] 2025-11-22 23:45:21,382 | INFO     | intersect: -3891998041.2037497
[2025-11-23 00:47:06] 2025-11-22 23:45:21,383 | INFO     | chi2: 2.3636289694759176
[2025-11-23 00:47:06] 2025-11-22 23:45:21,383 | INFO     | current chi2=2.3636289694759176 (change=0.044894969563689574 %)
[2025-11-23 00:47:06] 2025-11-22 23:45:21,383 | INFO     | left removable region: 20
[2025-11-23 00:47:06] 2025-11-22 23:45:21,384 | INFO     | sum of square deviations: 205601987058.0
[2025-11-23 00:47:06] 2025-11-22 23:45:21,400 | INFO     | sum of deviations: 682030818215.5
[2025-11-23 00:47:06] 2025-11-22 23:45:21,400 | INFO     | mean x: 1763827869.5
[2025-11-23 00:47:06] 2025-11-22 23:45:21,401 | INFO     | mean y: 2294197.966743119
[2025-11-23 00:47:06] 2025-11-22 23:45:21,401 | INFO     | intersect: -5848743441.504255
[2025-11-23 00:47:06] 2025-11-22 23:45:21,402 | INFO     | chi2: 0.05879121690996885
[2025-11-23 00:47:06] 2025-11-22 23:45:21,402 | INFO     | current memory leak: 3.32 B/s (using 872 data points, chi2=0.06)
[2025-11-23 00:47:06] 2025-11-22 23:45:21,403 | INFO     | could have reported an average CPU frequency of 2715 MHz (34 samples)
[2025-11-23 00:47:06] 2025-11-22 23:45:21,403 | INFO     | ..............................
[2025-11-23 00:47:06] 2025-11-22 23:45:21,403 | INFO     | . Timing measurements:
[2025-11-23 00:47:06] 2025-11-22 23:45:21,403 | INFO     | . get job = 0 s
[2025-11-23 00:47:06] 2025-11-22 23:45:21,403 | INFO     | . initial setup = 1 s
[2025-11-23 00:47:06] 2025-11-22 23:45:21,403 | INFO     | . payload setup = 9 s
[2025-11-23 00:47:06] 2025-11-22 23:45:21,403 | INFO     | . stage-in = 0 s
[2025-11-23 00:47:06] 2025-11-22 23:45:21,404 | INFO     | . payload execution = 55030 s
[2025-11-23 00:47:06] 2025-11-22 23:45:21,404 | INFO     | . stage-out = 2 s
[2025-11-23 00:47:06] 2025-11-22 23:45:21,404 | INFO     | . log creation = 0 s
[2025-11-23 00:47:06] 2025-11-22 23:45:21,404 | INFO     | ..............................
[2025-11-23 00:47:06] 2025-11-22 23:45:21,499 | INFO     | 
[2025-11-23 00:47:06] 2025-11-22 23:45:21,499 | INFO     | job summary report
[2025-11-23 00:47:06] 2025-11-22 23:45:21,499 | INFO     | --------------------------------------------------
[2025-11-23 00:47:06] 2025-11-22 23:45:21,499 | INFO     | PanDA job id: 6893861665
[2025-11-23 00:47:06] 2025-11-22 23:45:21,500 | INFO     | task id: 47523449
[2025-11-23 00:47:06] 2025-11-22 23:45:21,500 | INFO     | errors: (none)
[2025-11-23 00:47:06] 2025-11-22 23:45:21,500 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 00:47:06] 2025-11-22 23:45:21,500 | INFO     | pilot state: finished 
[2025-11-23 00:47:06] 2025-11-22 23:45:21,500 | INFO     | transexitcode: 0
[2025-11-23 00:47:06] 2025-11-22 23:45:21,500 | INFO     | exeerrorcode: 0
[2025-11-23 00:47:06] 2025-11-22 23:45:21,500 | INFO     | exeerrordiag: 
[2025-11-23 00:47:06] 2025-11-22 23:45:21,500 | INFO     | exitcode: 0
[2025-11-23 00:47:06] 2025-11-22 23:45:21,500 | INFO     | exitmsg: OK
[2025-11-23 00:47:06] 2025-11-22 23:45:21,500 | INFO     | cpuconsumptiontime: 217850 s
[2025-11-23 00:47:06] 2025-11-22 23:45:21,500 | INFO     | nevents: 1000
[2025-11-23 00:47:06] 2025-11-22 23:45:21,500 | INFO     | neventsw: 0
[2025-11-23 00:47:06] 2025-11-22 23:45:21,500 | INFO     | pid: 3079775
[2025-11-23 00:47:06] 2025-11-22 23:45:21,501 | INFO     | pgrp: 3079775
[2025-11-23 00:47:06] 2025-11-22 23:45:21,501 | INFO     | corecount: 4
[2025-11-23 00:47:06] 2025-11-22 23:45:21,501 | INFO     | event service: False
[2025-11-23 00:47:06] 2025-11-22 23:45:21,501 | INFO     | sizes: {0: 2298591, 1: 2298846, 8: 2299108, 12: 2299136, 55043: 2351844, 55046: 2360862, 55047: 2361046, 55054: 2361292}
[2025-11-23 00:47:06] 2025-11-22 23:45:21,501 | INFO     | --------------------------------------------------
[2025-11-23 00:47:06] 2025-11-22 23:45:21,501 | INFO     | 
[2025-11-23 00:47:06] 2025-11-22 23:45:21,501 | INFO     | executing command: ls -lF /scratch/boinc/var/slot116/slots/0
[2025-11-23 00:47:06] 2025-11-22 23:45:21,531 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 00:47:06] 2025-11-22 23:45:21,531 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 00:47:06] 2025-11-22 23:45:21,531 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 00:47:06] 2025-11-22 23:45:21,531 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 00:47:06] 2025-11-22 23:45:21,532 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 00:47:06] 2025-11-22 23:45:21,532 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 00:47:06] 2025-11-22 23:45:21,532 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 00:47:06] 2025-11-22 23:45:21,532 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 00:47:06] 2025-11-22 23:45:21,532 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 00:47:06] 2025-11-22 23:45:21,532 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 00:47:06] 2025-11-22 23:45:21,532 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 00:47:06] 2025-11-22 23:45:21,532 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 00:47:06] 2025-11-22 23:45:21,532 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 00:47:06] 2025-11-22 23:45:21,532 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 00:47:06] 2025-11-22 23:45:21,532 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 00:47:06] 2025-11-22 23:45:21,533 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 00:47:06] 2025-11-22 23:45:21,533 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 00:47:06] 2025-11-22 23:45:21,533 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 00:47:06] 2025-11-22 23:45:21,533 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 00:47:06] 2025-11-22 23:45:21,533 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 00:47:06] 2025-11-22 23:45:21,533 | INFO     | job 6893861665 has completed (purged errors)
[2025-11-23 00:47:06] 2025-11-22 23:45:21,533 | INFO     | overall cleanup function is called
[2025-11-23 00:47:06] 2025-11-22 23:45:22,549 | INFO     | --- collectZombieJob: --- 10, [3079775]
[2025-11-23 00:47:06] 2025-11-22 23:45:22,550 | INFO     | zombie collector waiting for pid 3079775
[2025-11-23 00:47:06] 2025-11-22 23:45:22,550 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 00:47:06] 2025-11-22 23:45:22,550 | INFO     | collected zombie processes
[2025-11-23 00:47:06] 2025-11-22 23:45:22,550 | INFO     | will attempt to kill all subprocesses of pid=3079775
[2025-11-23 00:47:06] 2025-11-22 23:45:24,664 | INFO     | PID=3068882 has CPU usage=26.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-23 00:47:06] 2025-11-22 23:45:24,665 | INFO     | .. there are 7 such processes running
[2025-11-23 00:47:06] 2025-11-22 23:45:24,692 | INFO     | process IDs to be killed: [3079775] (in reverse order)
[2025-11-23 00:47:06] 2025-11-22 23:45:24,926 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 00:47:06] 2025-11-22 23:45:24,926 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 00:47:06] 2025-11-22 23:45:24,960 | INFO     | did not find any defunct processes belonging to 3079775
[2025-11-23 00:47:06] 2025-11-22 23:45:24,994 | INFO     | did not find any defunct processes belonging to 3079775
[2025-11-23 00:47:06] 2025-11-22 23:45:24,995 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 00:47:06] 2025-11-22 23:45:24,996 | INFO     | ready for new job
[2025-11-23 00:47:06] 2025-11-22 23:45:24,996 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 00:47:06] 2025-11-22 23:45:25,002 | INFO     | ***************************************
[2025-11-23 00:47:06] 2025-11-22 23:45:25,002 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 00:47:06] 2025-11-22 23:45:25,002 | INFO     | ***************************************
[2025-11-23 00:47:06] 2025-11-22 23:45:25,002 | INFO     | 
[2025-11-23 00:47:06] 2025-11-22 23:45:25,011 | INFO     | architecture information:
[2025-11-23 00:47:06] 2025-11-22 23:45:25,012 | INFO     | executing command: cat /etc/os-release
[2025-11-23 00:47:06] 2025-11-22 23:45:25,037 | INFO     | cat /etc/os-release:
[2025-11-23 00:47:06] NAME="CentOS Linux"
[2025-11-23 00:47:06] VERSION="7 (Core)"
[2025-11-23 00:47:06] ID="centos"
[2025-11-23 00:47:06] ID_LIKE="rhel fedora"
[2025-11-23 00:47:06] VERSION_ID="7"
[2025-11-23 00:47:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 00:47:06] ANSI_COLOR="0;31"
[2025-11-23 00:47:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 00:47:06] HOME_URL="https://www.centos.org/"
[2025-11-23 00:47:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 00:47:06] 
[2025-11-23 00:47:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 00:47:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 00:47:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 00:47:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 00:47:06] 
[2025-11-23 00:47:06] 2025-11-22 23:45:25,037 | INFO     | ***************************************
[2025-11-23 00:47:06] 2025-11-22 23:45:25,539 | INFO     | executing command: df -mP /scratch/boinc/var/slot116/slots/0
[2025-11-23 00:47:06] 2025-11-22 23:45:25,564 | INFO     | sufficient remaining disk space (3319975116800 B)
[2025-11-23 00:47:06] 2025-11-22 23:45:25,564 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 00:47:06] 2025-11-22 23:45:25,564 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 00:47:06] 2025-11-22 23:45:25,564 | INFO     | update_server=False
[2025-11-23 00:47:06] 2025-11-22 23:45:25,564 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 00:47:06] 2025-11-22 23:45:25,565 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 00:47:06] 2025-11-22 23:45:25,565 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-23 00:47:06] 2025-11-22 23:45:25,566 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 00:47:06] 2025-11-22 23:45:25,566 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 00:47:06] 2025-11-22 23:45:25,567 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 00:47:06] 2025-11-22 23:45:25,568 | INFO     | aborting loop
[2025-11-23 00:47:06] 2025-11-22 23:45:25,568 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 00:47:06] 2025-11-22 23:45:25,569 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 00:47:06] 2025-11-22 23:45:26,092 | INFO     | all data control threads have been joined
[2025-11-23 00:47:06] 2025-11-22 23:45:26,387 | INFO     | all payload control threads have been joined
[2025-11-23 00:47:06] 2025-11-22 23:45:26,507 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 00:47:06] 2025-11-22 23:45:26,567 | INFO     | [job] retrieve thread has finished
[2025-11-23 00:47:06] 2025-11-22 23:45:26,573 | INFO     | [job] job monitor thread has finished
[2025-11-23 00:47:06] 2025-11-22 23:45:26,609 | INFO     | all job control threads have been joined
[2025-11-23 00:47:06] 2025-11-22 23:45:27,097 | INFO     | [data] control thread has finished
[2025-11-23 00:47:06] 2025-11-22 23:45:27,112 | INFO     | [data] copytool_in thread has finished
[2025-11-23 00:47:06] 2025-11-22 23:45:27,393 | INFO     | [payload] control thread has finished
[2025-11-23 00:47:06] 2025-11-22 23:45:27,443 | INFO     | [job] validate thread has finished
[2025-11-23 00:47:06] 2025-11-22 23:45:27,461 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 00:47:06] 2025-11-22 23:45:27,512 | INFO     | [job] queue monitor thread has finished
[2025-11-23 00:47:06] 2025-11-22 23:45:27,568 | INFO     | [payload] validate_post thread has finished
[2025-11-23 00:47:06] 2025-11-22 23:45:27,572 | INFO     | [data] copytool_out thread has finished
[2025-11-23 00:47:06] 2025-11-22 23:45:27,615 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 00:47:06] 2025-11-22 23:45:27,615 | INFO     | [job] control thread has finished
[2025-11-23 00:47:06] 2025-11-22 23:45:27,744 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 00:47:06] 2025-11-22 23:45:27,869 | INFO     | [payload] failed_post thread has finished
[2025-11-23 00:47:06] 2025-11-22 23:45:27,978 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 00:47:06] 2025-11-22 23:45:29,574 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 00:47:06] 2025-11-22 23:45:56,150 | INFO     | [monitor] cgroup control has ended
[2025-11-23 00:47:06] 2025-11-22 23:45:57,240 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22917078538048)>', '<ExcThread(monitor, started 22916840257280)>']
[2025-11-23 00:47:06] 2025-11-22 23:45:57,724 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 00:47:06] 2025-11-22 23:45:57,724 | INFO     | [monitor] control thread has ended
[2025-11-23 00:47:06] 2025-11-22 23:46:02,265 | INFO     | all workflow threads have been joined
[2025-11-23 00:47:06] 2025-11-22 23:46:02,265 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 00:47:06] 2025-11-22 23:46:02,265 | INFO     | traces error code: 0
[2025-11-23 00:47:06] 2025-11-22 23:46:02,265 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 00:47:06] 2025-11-22 23:46:02,458 [wrapper] ==== pilot stdout END ====
[2025-11-23 00:47:06] 2025-11-22 23:46:02,461 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 00:47:06] 2025-11-22 23:46:02,464 [wrapper] pilotpid: 3068882
[2025-11-23 00:47:06] 2025-11-22 23:46:02,466 [wrapper] Pilot exit status: 0
[2025-11-23 00:47:06] 2025-11-22 23:46:02,482 [wrapper] pandaids: 6893861665
[2025-11-23 00:47:06] 2025-11-22 23:46:02,650 [wrapper] cleanup supervisor_pilot  307647 3068883
[2025-11-23 00:47:06] 2025-11-22 23:46:02,654 [wrapper] Test setup, not cleaning
[2025-11-23 00:47:06] 2025-11-22 23:46:02,658 [wrapper] apfmon messages muted
[2025-11-23 00:47:06] 2025-11-22 23:46:02,662 [wrapper] ==== wrapper stdout END ====
[2025-11-23 00:47:06] 2025-11-22 23:46:02,665 [wrapper] ==== wrapper stderr END ====
[2025-11-23 00:47:06]  *** Error codes and diagnostics ***
[2025-11-23 00:47:06]     "exeErrorCode": 0,
[2025-11-23 00:47:06]     "exeErrorDiag": "",
[2025-11-23 00:47:06]     "pilotErrorCode": 0,
[2025-11-23 00:47:06]     "pilotErrorDiag": "",
[2025-11-23 00:47:06]  *** Listing of results directory ***
[2025-11-23 00:47:06] total 1316172
[2025-11-23 00:47:06] -rw-r--r-- 1 boinc boinc    576529 Nov 20 14:50 pilot3.tar.gz
[2025-11-23 00:47:06] -rwx------ 1 boinc boinc     36292 Nov 20 15:04 runpilot2-wrapper.sh
[2025-11-23 00:47:06] -rw-r--r-- 1 boinc boinc      5112 Nov 20 15:04 queuedata.json
[2025-11-23 00:47:06] -rw-r--r-- 1 boinc boinc       100 Nov 22 09:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 00:47:06] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 09:27 run_atlas
[2025-11-23 00:47:06] -rw-r--r-- 1 boinc boinc       105 Nov 22 09:27 job.xml
[2025-11-23 00:47:06] -rw-r--r-- 2 boinc boinc 408984079 Nov 22 09:27 EVNT.47493127._000583.pool.root.1
[2025-11-23 00:47:06] -rw-r--r-- 1 boinc boinc      6687 Nov 22 09:27 init_data.xml
[2025-11-23 00:47:06] -rw-r--r-- 2 boinc boinc     15847 Nov 22 09:27 start_atlas.sh
[2025-11-23 00:47:06] drwxrwx--x 2 boinc boinc      4096 Nov 22 09:27 shared
[2025-11-23 00:47:06] -rw-r--r-- 2 boinc boinc    590099 Nov 22 09:27 input.tar.gz
[2025-11-23 00:47:06] -rw-r--r-- 1 boinc boinc         0 Nov 22 09:27 boinc_lockfile
[2025-11-23 00:47:06] -rw-r--r-- 1 boinc boinc      2785 Nov 22 09:27 pandaJob.out
[2025-11-23 00:47:06] -rw------- 1 boinc boinc    989760 Nov 22 09:27 agis_schedconf.cvmfs.json
[2025-11-23 00:47:06] drwx------ 5 boinc boinc      4096 Nov 22 09:27 pilot3
[2025-11-23 00:47:06] -rw-r--r-- 1 boinc boinc       532 Nov 23 00:38 boinc_task_state.xml
[2025-11-23 00:47:06] -rw------- 1 boinc boinc 916342697 Nov 23 00:44 HITS.47523449._005828.pool.root.1
[2025-11-23 00:47:06] -rw------- 1 boinc boinc      1041 Nov 23 00:45 memory_monitor_summary.json
[2025-11-23 00:47:06] -rw------- 1 boinc boinc        95 Nov 23 00:45 pilot_heartbeat.json
[2025-11-23 00:47:06] -rw------- 1 boinc boinc   1526164 Nov 23 00:45 agis_ddmendpoints.agis.ALL.json
[2025-11-23 00:47:06] -rw------- 1 boinc boinc   1640893 Nov 23 00:45 log.47523449._005828.job.log.tgz.1
[2025-11-23 00:47:06] -rw------- 1 boinc boinc      8594 Nov 23 00:45 heartbeat.json
[2025-11-23 00:47:06] -rw------- 1 boinc boinc      4564 Nov 23 00:46 pilotlog.txt
[2025-11-23 00:47:06] -rw------- 1 boinc boinc   7614274 Nov 23 00:46 log.47523449._005828.job.log.1
[2025-11-23 00:47:06] -rw------- 1 boinc boinc       353 Nov 23 00:46 output.list
[2025-11-23 00:47:06] -rw-r--r-- 1 boinc boinc       620 Nov 23 00:46 runtime_log
[2025-11-23 00:47:06] -rw------- 1 boinc boinc   9277440 Nov 23 00:46 result.tar.gz
[2025-11-23 00:47:06] -rw-r--r-- 1 boinc boinc      9223 Nov 23 00:46 runtime_log.err
[2025-11-23 00:47:06] -rw------- 1 boinc boinc       670 Nov 23 00:46 O3eNDmLSKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmW1HKDm1ZDTZm.diag
[2025-11-23 00:47:06] -rw-r--r-- 1 boinc boinc        28 Nov 23 00:47 wrapper_checkpoint.txt
[2025-11-23 00:47:06] -rw-r--r-- 1 boinc boinc      8192 Nov 23 00:47 boinc_mmap_file
[2025-11-23 00:47:06] -rw-r--r-- 1 boinc boinc     21082 Nov 23 00:47 stderr.txt
[2025-11-23 00:47:06] HITS file was successfully produced:
[2025-11-23 00:47:06] -rw------- 1 boinc boinc 916342697 Nov 23 00:44 shared/HITS.pool.root.1
[2025-11-23 00:47:06]  *** Contents of shared directory: ***
[2025-11-23 00:47:06] total 1303932
[2025-11-23 00:47:06] -rw-r--r-- 2 boinc boinc 408984079 Nov 22 09:27 ATLAS.root_0
[2025-11-23 00:47:06] -rw-r--r-- 2 boinc boinc     15847 Nov 22 09:27 start_atlas.sh
[2025-11-23 00:47:06] -rw-r--r-- 2 boinc boinc    590099 Nov 22 09:27 input.tar.gz
[2025-11-23 00:47:06] -rw------- 1 boinc boinc 916342697 Nov 23 00:44 HITS.pool.root.1
[2025-11-23 00:47:06] -rw------- 1 boinc boinc   9277440 Nov 23 00:46 result.tar.gz
00:47:07 (3064875): run_atlas exited; CPU time 220791.234547
00:47:07 (3064875): called boinc_finish(0)

</stderr_txt>
]]>

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