Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:49:50 (1293): wrapper (7.7.26015): starting
00:49:50 (1293): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 00:49:50] Arguments: --nthreads 8
[2025-11-24 00:49:50] Threads: 8
[2025-11-24 00:49:50] Checking for CVMFS
[2025-11-24 00:49:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:49:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:49:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:49:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:49:52] 2.11.2.0 24942 79881 87904 153226 0 85 16212208 25165824 4632 130560 6 22401892 99.895 11892942 1891 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 00:49:52] CVMFS is ok
[2025-11-24 00:49:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:49:52] Checking for apptainer binary...
[2025-11-24 00:49:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:49:52] Running /usr/bin/apptainer --version
[2025-11-24 00:49:52] apptainer version 1.3.2-1.el7
[2025-11-24 00:49:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:50:04] cg-vwn352.simple-grid.lan
[2025-11-24 00:50:04] apptainer works
[2025-11-24 00:50:04] Set ATHENA_PROC_NUMBER=8
[2025-11-24 00:50:04] Set ATHENA_CORE_NUMBER=8
[2025-11-24 00:50:04] Starting ATLAS job with PandaID=6893849759
[2025-11-24 00:50:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 22:12:11]  *** The last 200 lines of the pilot log: ***
[2025-11-24 22:12:11] 2025-11-24 21:11:25,281 | INFO     | monitor loop #5168: job 0:6893849759 is in state 'finished'
[2025-11-24 22:12:11] 2025-11-24 21:11:25,281 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 22:12:11] 2025-11-24 21:11:25,758 | INFO     | time since job start (76621s) is within the limit (172800.0s)
[2025-11-24 22:12:11] 2025-11-24 21:11:27,768 | INFO     | time since job start (76623s) is within the limit (172800.0s)
[2025-11-24 22:12:11] 2025-11-24 21:11:27,768 | INFO     | 76633s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-24 22:12:11] 2025-11-24 21:11:27,786 | INFO     | monitor loop #5169: job 0:6893849759 is in state 'finished'
[2025-11-24 22:12:11] 2025-11-24 21:11:27,786 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 22:12:11] 2025-11-24 21:11:29,775 | INFO     | time since job start (76625s) is within the limit (172800.0s)
[2025-11-24 22:12:11] 2025-11-24 21:11:30,294 | INFO     | monitor loop #5170: job 0:6893849759 is in state 'finished'
[2025-11-24 22:12:11] 2025-11-24 21:11:30,294 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 22:12:11] 2025-11-24 21:11:31,782 | INFO     | time since job start (76627s) is within the limit (172800.0s)
[2025-11-24 22:12:11] 2025-11-24 21:11:32,802 | INFO     | monitor loop #5171: job 0:6893849759 is in state 'finished'
[2025-11-24 22:12:11] 2025-11-24 21:11:32,802 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 22:12:11] 2025-11-24 21:11:33,028 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 22:12:11] 2025-11-24 21:11:33,029 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 22:12:11] 2025-11-24 21:11:33,031 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6893849759/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 22:12:11] 2025-11-24 21:11:33,032 | INFO     | extracted standard info from prmon json
[2025-11-24 22:12:11] 2025-11-24 21:11:33,032 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 22:12:11] 2025-11-24 21:11:33,032 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 22:12:11] 2025-11-24 21:11:33,065 | INFO     | fitting pss+swap vs Time
[2025-11-24 22:12:11] 2025-11-24 21:11:33,068 | INFO     | sum of square deviations: 599830928002.6165
[2025-11-24 22:12:11] 2025-11-24 21:11:33,161 | INFO     | sum of deviations: 2256925107760.6553
[2025-11-24 22:12:11] 2025-11-24 21:11:33,161 | INFO     | mean x: 1763980569.5626004
[2025-11-24 22:12:11] 2025-11-24 21:11:33,161 | INFO     | mean y: 2812683.812199037
[2025-11-24 22:12:11] 2025-11-24 21:11:33,161 | INFO     | intersect: -6634344306.916376
[2025-11-24 22:12:11] 2025-11-24 21:11:33,163 | INFO     | chi2: 28.25459207123813
[2025-11-24 22:12:11] 2025-11-24 21:11:33,173 | INFO     | sum of square deviations: 592639131849.4485
[2025-11-24 22:12:11] 2025-11-24 21:11:33,238 | INFO     | sum of deviations: 2656957929687.067
[2025-11-24 22:12:11] 2025-11-24 21:11:33,238 | INFO     | mean x: 1763980417.0668817
[2025-11-24 22:12:11] 2025-11-24 21:11:33,238 | INFO     | mean y: 2821164.7219983884
[2025-11-24 22:12:11] 2025-11-24 21:11:33,238 | INFO     | intersect: -7905569464.685799
[2025-11-24 22:12:11] 2025-11-24 21:11:33,240 | INFO     | chi2: 25.042679103813967
[2025-11-24 22:12:11] 2025-11-24 21:11:33,240 | INFO     | current chi2=25.042679103813967 (change=11.367755582264241 %)
[2025-11-24 22:12:11] 2025-11-24 21:11:33,241 | INFO     | right removable region: 1240
[2025-11-24 22:12:11] 2025-11-24 21:11:33,243 | INFO     | sum of square deviations: 592638324209.4487
[2025-11-24 22:12:11] 2025-11-24 21:11:33,292 | INFO     | sum of deviations: 1740184195055.7678
[2025-11-24 22:12:11] 2025-11-24 21:11:33,292 | INFO     | mean x: 1763980722.0668817
[2025-11-24 22:12:11] 2025-11-24 21:11:33,292 | INFO     | mean y: 2823639.3642224013
[2025-11-24 22:12:11] 2025-11-24 21:11:33,292 | INFO     | intersect: -5176813328.964846
[2025-11-24 22:12:11] 2025-11-24 21:11:33,294 | INFO     | chi2: 23.588994334698594
[2025-11-24 22:12:11] 2025-11-24 21:11:33,294 | INFO     | current chi2=23.588994334698594 (change=16.512706057748744 %)
[2025-11-24 22:12:11] 2025-11-24 21:11:33,295 | INFO     | left removable region: 10
[2025-11-24 22:12:11] 2025-11-24 21:11:33,296 | INFO     | sum of square deviations: 577018419068.3157
[2025-11-24 22:12:11] 2025-11-24 21:11:33,385 | INFO     | sum of deviations: 1819658790880.4778
[2025-11-24 22:12:11] 2025-11-24 21:11:33,386 | INFO     | mean x: 1763980691.5764227
[2025-11-24 22:12:11] 2025-11-24 21:11:33,386 | INFO     | mean y: 2842926.899186992
[2025-11-24 22:12:11] 2025-11-24 21:11:33,386 | INFO     | intersect: -5559965583.708228
[2025-11-24 22:12:11] 2025-11-24 21:11:33,387 | INFO     | chi2: 16.751118167230622
[2025-11-24 22:12:11] 2025-11-24 21:11:33,388 | INFO     | current memory leak: 3.15 B/s (using 1230 data points, chi2=16.75)
[2025-11-24 22:12:11] 2025-11-24 21:11:33,389 | INFO     | could have reported an average CPU frequency of 1999 MHz (42 samples)
[2025-11-24 22:12:11] 2025-11-24 21:11:33,389 | INFO     | ..............................
[2025-11-24 22:12:11] 2025-11-24 21:11:33,389 | INFO     | . Timing measurements:
[2025-11-24 22:12:11] 2025-11-24 21:11:33,389 | INFO     | . get job = 0 s
[2025-11-24 22:12:11] 2025-11-24 21:11:33,389 | INFO     | . initial setup = 10 s
[2025-11-24 22:12:11] 2025-11-24 21:11:33,390 | INFO     | . payload setup = 169 s
[2025-11-24 22:12:11] 2025-11-24 21:11:33,390 | INFO     | . stage-in = 0 s
[2025-11-24 22:12:11] 2025-11-24 21:11:33,390 | INFO     | . payload execution = 76128 s
[2025-11-24 22:12:11] 2025-11-24 21:11:33,390 | INFO     | . stage-out = 12 s
[2025-11-24 22:12:11] 2025-11-24 21:11:33,390 | INFO     | . log creation = 2 s
[2025-11-24 22:12:11] 2025-11-24 21:11:33,390 | INFO     | ..............................
[2025-11-24 22:12:11] 2025-11-24 21:11:33,535 | INFO     | 
[2025-11-24 22:12:11] 2025-11-24 21:11:33,535 | INFO     | job summary report
[2025-11-24 22:12:11] 2025-11-24 21:11:33,535 | INFO     | --------------------------------------------------
[2025-11-24 22:12:11] 2025-11-24 21:11:33,535 | INFO     | PanDA job id: 6893849759
[2025-11-24 22:12:11] 2025-11-24 21:11:33,535 | INFO     | task id: 47523449
[2025-11-24 22:12:11] 2025-11-24 21:11:33,535 | INFO     | errors: (none)
[2025-11-24 22:12:11] 2025-11-24 21:11:33,535 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 22:12:11] 2025-11-24 21:11:33,536 | INFO     | pilot state: finished 
[2025-11-24 22:12:11] 2025-11-24 21:11:33,536 | INFO     | transexitcode: 0
[2025-11-24 22:12:11] 2025-11-24 21:11:33,536 | INFO     | exeerrorcode: 0
[2025-11-24 22:12:11] 2025-11-24 21:11:33,536 | INFO     | exeerrordiag: 
[2025-11-24 22:12:11] 2025-11-24 21:11:33,536 | INFO     | exitcode: 0
[2025-11-24 22:12:11] 2025-11-24 21:11:33,536 | INFO     | exitmsg: OK
[2025-11-24 22:12:11] 2025-11-24 21:11:33,536 | INFO     | cpuconsumptiontime: 332056 s
[2025-11-24 22:12:11] 2025-11-24 21:11:33,536 | INFO     | nevents: 1000
[2025-11-24 22:12:11] 2025-11-24 21:11:33,536 | INFO     | neventsw: 0
[2025-11-24 22:12:11] 2025-11-24 21:11:33,537 | INFO     | pid: 11701
[2025-11-24 22:12:11] 2025-11-24 21:11:33,537 | INFO     | pgrp: 11701
[2025-11-24 22:12:11] 2025-11-24 21:11:33,537 | INFO     | corecount: 8
[2025-11-24 22:12:11] 2025-11-24 21:11:33,537 | INFO     | event service: False
[2025-11-24 22:12:11] 2025-11-24 21:11:33,537 | INFO     | sizes: {0: 2298636, 1: 2298835, 12: 2298835, 23: 2298863, 34: 2298891, 44: 2298919, 55: 2299075, 66: 2299103, 76: 2299131, 87: 2299187, 98: 2299757, 109: 2299785, 
[2025-11-24 22:12:11] 2025-11-24 21:11:33,537 | INFO     | --------------------------------------------------
[2025-11-24 22:12:11] 2025-11-24 21:11:33,537 | INFO     | 
[2025-11-24 22:12:11] 2025-11-24 21:11:33,537 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-24 22:12:11] 2025-11-24 21:11:33,797 | INFO     | time since job start (76629s) is within the limit (172800.0s)
[2025-11-24 22:12:11] 2025-11-24 21:11:34,144 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 22:12:11] 2025-11-24 21:11:34,144 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 22:12:11] 2025-11-24 21:11:34,145 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 22:12:11] 2025-11-24 21:11:34,145 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 22:12:11] 2025-11-24 21:11:34,145 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 22:12:11] 2025-11-24 21:11:34,145 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 22:12:11] 2025-11-24 21:11:34,145 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 22:12:11] 2025-11-24 21:11:34,145 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 22:12:11] 2025-11-24 21:11:34,145 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 22:12:11] 2025-11-24 21:11:34,145 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 22:12:11] 2025-11-24 21:11:34,145 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 22:12:11] 2025-11-24 21:11:34,145 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 22:12:11] 2025-11-24 21:11:34,145 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 22:12:11] 2025-11-24 21:11:34,146 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 22:12:11] 2025-11-24 21:11:34,146 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 22:12:11] 2025-11-24 21:11:34,146 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 22:12:11] 2025-11-24 21:11:34,146 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 22:12:11] 2025-11-24 21:11:34,146 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 22:12:11] 2025-11-24 21:11:34,146 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 22:12:11] 2025-11-24 21:11:34,146 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 22:12:11] 2025-11-24 21:11:34,146 | INFO     | job 6893849759 has completed (purged errors)
[2025-11-24 22:12:11] 2025-11-24 21:11:34,147 | INFO     | overall cleanup function is called
[2025-11-24 22:12:11] 2025-11-24 21:11:34,926 | INFO     | PID=5086 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 22:12:11] 2025-11-24 21:11:34,926 | INFO     | .. there are 2 such processes running
[2025-11-24 22:12:11] 2025-11-24 21:11:35,164 | INFO     | --- collectZombieJob: --- 10, [11701]
[2025-11-24 22:12:11] 2025-11-24 21:11:35,164 | INFO     | zombie collector waiting for pid 11701
[2025-11-24 22:12:11] 2025-11-24 21:11:35,164 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 22:12:11] 2025-11-24 21:11:35,164 | INFO     | collected zombie processes
[2025-11-24 22:12:11] 2025-11-24 21:11:35,164 | INFO     | will attempt to kill all subprocesses of pid=11701
[2025-11-24 22:12:11] 2025-11-24 21:11:35,233 | INFO     | process IDs to be killed: [11701] (in reverse order)
[2025-11-24 22:12:11] 2025-11-24 21:11:36,049 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 22:12:11] 2025-11-24 21:11:36,049 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 22:12:11] 2025-11-24 21:11:36,051 | INFO     | did not find any defunct processes belonging to 11701
[2025-11-24 22:12:11] 2025-11-24 21:11:36,053 | INFO     | did not find any defunct processes belonging to 11701
[2025-11-24 22:12:11] 2025-11-24 21:11:36,087 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 22:12:11] 2025-11-24 21:11:36,087 | INFO     | ready for new job
[2025-11-24 22:12:11] 2025-11-24 21:11:36,087 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 22:12:11] 2025-11-24 21:11:36,092 | INFO     | ***************************************
[2025-11-24 22:12:11] 2025-11-24 21:11:36,092 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 22:12:11] 2025-11-24 21:11:36,092 | INFO     | ***************************************
[2025-11-24 22:12:11] 2025-11-24 21:11:36,092 | INFO     | 
[2025-11-24 22:12:11] 2025-11-24 21:11:36,093 | INFO     | pilot is running in a VM
[2025-11-24 22:12:11] 2025-11-24 21:11:36,093 | INFO     | architecture information:
[2025-11-24 22:12:11] 2025-11-24 21:11:36,103 | INFO     | executing command: cat /etc/os-release
[2025-11-24 22:12:11] 2025-11-24 21:11:36,326 | INFO     | cat /etc/os-release:
[2025-11-24 22:12:11] NAME="CentOS Linux"
[2025-11-24 22:12:11] VERSION="7 (Core)"
[2025-11-24 22:12:11] ID="centos"
[2025-11-24 22:12:11] ID_LIKE="rhel fedora"
[2025-11-24 22:12:11] VERSION_ID="7"
[2025-11-24 22:12:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 22:12:11] ANSI_COLOR="0;31"
[2025-11-24 22:12:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 22:12:11] HOME_URL="https://www.centos.org/"
[2025-11-24 22:12:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 22:12:11] 
[2025-11-24 22:12:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 22:12:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 22:12:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 22:12:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 22:12:11] 
[2025-11-24 22:12:11] 2025-11-24 21:11:36,326 | INFO     | ***************************************
[2025-11-24 22:12:11] 2025-11-24 21:11:36,830 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-24 22:12:11] 2025-11-24 21:11:37,027 | INFO     | sufficient remaining disk space (493682163712 B)
[2025-11-24 22:12:11] 2025-11-24 21:11:37,028 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 22:12:11] 2025-11-24 21:11:37,028 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 22:12:11] 2025-11-24 21:11:37,028 | INFO     | update_server=False
[2025-11-24 22:12:11] 2025-11-24 21:11:37,028 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 22:12:11] 2025-11-24 21:11:37,035 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 22:12:11] 2025-11-24 21:11:37,035 | INFO     | aborting loop
[2025-11-24 22:12:11] 2025-11-24 21:11:37,170 | INFO     | all job control threads have been joined
[2025-11-24 22:12:11] 2025-11-24 21:11:37,591 | INFO     | [monitor] cgroup control has ended
[2025-11-24 22:12:11] 2025-11-24 21:11:37,624 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 22:12:11] 2025-11-24 21:11:37,932 | INFO     | all data control threads have been joined
[2025-11-24 22:12:11] 2025-11-24 21:11:38,034 | INFO     | [job] retrieve thread has finished
[2025-11-24 22:12:11] 2025-11-24 21:11:38,041 | INFO     | [job] job monitor thread has finished
[2025-11-24 22:12:11] 2025-11-24 21:11:38,104 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 22:12:11] 2025-11-24 21:11:38,176 | INFO     | [job] control thread has finished
[2025-11-24 22:12:11] 2025-11-24 21:11:38,319 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 22:12:11] 2025-11-24 21:11:38,382 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 22:12:11] 2025-11-24 21:11:38,476 | INFO     | all payload control threads have been joined
[2025-11-24 22:12:11] 2025-11-24 21:11:38,524 | INFO     | [job] validate thread has finished
[2025-11-24 22:12:11] 2025-11-24 21:11:38,552 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 22:12:11] 2025-11-24 21:11:38,812 | INFO     | [payload] failed_post thread has finished
[2025-11-24 22:12:11] 2025-11-24 21:11:38,889 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 22:12:11] 2025-11-24 21:11:38,938 | INFO     | [data] control thread has finished
[2025-11-24 22:12:11] 2025-11-24 21:11:39,041 | INFO     | [data] copytool_in thread has finished
[2025-11-24 22:12:11] 2025-11-24 21:11:39,273 | INFO     | [payload] validate_post thread has finished
[2025-11-24 22:12:11] 2025-11-24 21:11:39,464 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 22:12:11] 2025-11-24 21:11:39,483 | INFO     | [payload] control thread has finished
[2025-11-24 22:12:11] 2025-11-24 21:11:39,558 | INFO     | [job] queue monitor thread has finished
[2025-11-24 22:12:11] 2025-11-24 21:11:39,631 | INFO     | [data] copytool_out thread has finished
[2025-11-24 22:12:11] 2025-11-24 21:11:42,328 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 22:12:11] 2025-11-24 21:11:43,611 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140502034691904)>', '<ExcThread(monitor, started 140501416122112)>']
[2025-11-24 22:12:11] 2025-11-24 21:11:48,637 | INFO     | all workflow threads have been joined
[2025-11-24 22:12:11] 2025-11-24 21:11:48,637 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 22:12:11] 2025-11-24 21:11:48,637 | INFO     | traces error code: 0
[2025-11-24 22:12:11] 2025-11-24 21:11:48,638 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 22:12:11] 2025-11-24 21:12:07,042 | INFO     | PID=5086 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 22:12:11] 2025-11-24 21:12:07,042 | INFO     | .. there are 2 such processes running
[2025-11-24 22:12:11] 2025-11-24 21:12:07,043 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 22:12:11] 2025-11-24 21:12:07,043 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 22:12:11] 2025-11-24 21:12:07,043 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 22:12:11] 2025-11-24 21:12:07,043 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 22:12:11] 2025-11-24 21:12:07,044 | INFO     | [monitor] control thread has ended
[2025-11-24 22:12:11] 2025-11-24 21:12:07,350 [wrapper] ==== pilot stdout END ====
[2025-11-24 22:12:11] 2025-11-24 21:12:07,432 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 22:12:11] 2025-11-24 21:12:07,510 [wrapper] pilotpid: 5086
[2025-11-24 22:12:11] 2025-11-24 21:12:07,561 [wrapper] Pilot exit status: 0
[2025-11-24 22:12:11] 2025-11-24 21:12:08,066 [wrapper] pandaids: 6893849759
[2025-11-24 22:12:11] 2025-11-24 21:12:08,917 [wrapper] cleanup supervisor_pilot 29039 5087
[2025-11-24 22:12:11] 2025-11-24 21:12:08,990 [wrapper] Test setup, not cleaning
[2025-11-24 22:12:11] 2025-11-24 21:12:09,098 [wrapper] apfmon messages muted
[2025-11-24 22:12:11] 2025-11-24 21:12:09,156 [wrapper] ==== wrapper stdout END ====
[2025-11-24 22:12:11] 2025-11-24 21:12:09,209 [wrapper] ==== wrapper stderr END ====
[2025-11-24 22:12:11]  *** Error codes and diagnostics ***
[2025-11-24 22:12:11]     "exeErrorCode": 0,
[2025-11-24 22:12:11]     "exeErrorDiag": "",
[2025-11-24 22:12:11]     "pilotErrorCode": 0,
[2025-11-24 22:12:11]     "pilotErrorDiag": "",
[2025-11-24 22:12:11]  *** Listing of results directory ***
[2025-11-24 22:12:11] total 1317432
[2025-11-24 22:12:11] -rw-r--r--. 1 boinc boinc    576529 Nov 20 12:00 pilot3.tar.gz
[2025-11-24 22:12:11] -rwx------. 1 boinc boinc     36292 Nov 20 12:05 runpilot2-wrapper.sh
[2025-11-24 22:12:11] -rw-r--r--. 1 boinc boinc      5112 Nov 20 12:05 queuedata.json
[2025-11-24 22:12:11] -rw-r--r--. 1 boinc boinc       100 Nov 24 00:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 22:12:11] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 00:49 run_atlas
[2025-11-24 22:12:11] -rw-r--r--. 1 boinc boinc       105 Nov 24 00:49 job.xml
[2025-11-24 22:12:11] -rw-r--r--. 1 boinc boinc      6392 Nov 24 00:49 init_data.xml
[2025-11-24 22:12:11] -rw-r--r--. 2 boinc boinc 409864509 Nov 24 00:49 EVNT.47493127._000305.pool.root.1
[2025-11-24 22:12:11] -rw-r--r--. 2 boinc boinc     15847 Nov 24 00:49 start_atlas.sh
[2025-11-24 22:12:11] drwxrwx--x. 2 boinc boinc        68 Nov 24 00:49 shared
[2025-11-24 22:12:11] -rw-r--r--. 2 boinc boinc    590095 Nov 24 00:49 input.tar.gz
[2025-11-24 22:12:11] -rw-r--r--. 1 boinc boinc         0 Nov 24 00:49 boinc_lockfile
[2025-11-24 22:12:11] -rw-r--r--. 1 boinc boinc      2786 Nov 24 00:50 pandaJob.out
[2025-11-24 22:12:11] -rw-------. 1 boinc boinc    989786 Nov 24 00:54 agis_schedconf.cvmfs.json
[2025-11-24 22:12:11] drwx------. 5 boinc boinc      4096 Nov 24 00:54 pilot3
[2025-11-24 22:12:11] -rw-r--r--. 1 boinc boinc       533 Nov 24 21:40 boinc_task_state.xml
[2025-11-24 22:12:11] -rw-------. 1 boinc boinc 910137656 Nov 24 22:08 HITS.47523449._003049.pool.root.1
[2025-11-24 22:12:11] -rw-------. 1 boinc boinc      1032 Nov 24 22:09 memory_monitor_summary.json
[2025-11-24 22:12:11] -rw-------. 1 boinc boinc   1516227 Nov 24 22:09 agis_ddmendpoints.agis.ALL.json
[2025-11-24 22:12:11] -rw-------. 1 boinc boinc   2369645 Nov 24 22:09 log.47523449._003049.job.log.tgz.1
[2025-11-24 22:12:11] -rw-------. 1 boinc boinc      7961 Nov 24 22:11 heartbeat.json
[2025-11-24 22:12:11] -rw-r--r--. 1 boinc boinc      8192 Nov 24 22:12 boinc_mmap_file
[2025-11-24 22:12:11] -rw-r--r--. 1 boinc boinc        29 Nov 24 22:12 wrapper_checkpoint.txt
[2025-11-24 22:12:11] -rw-------. 1 boinc boinc        95 Nov 24 22:12 pilot_heartbeat.json
[2025-11-24 22:12:11] -rw-------. 1 boinc boinc       819 Nov 24 22:12 pilotlog.txt
[2025-11-24 22:12:11] -rw-------. 1 boinc boinc  10208036 Nov 24 22:12 log.47523449._003049.job.log.1
[2025-11-24 22:12:11] -rw-------. 1 boinc boinc       353 Nov 24 22:12 output.list
[2025-11-24 22:12:11] -rw-r--r--. 1 boinc boinc       620 Nov 24 22:12 runtime_log
[2025-11-24 22:12:11] -rw-------. 1 boinc boinc  12595200 Nov 24 22:12 result.tar.gz
[2025-11-24 22:12:11] -rw-r--r--. 1 boinc boinc      8817 Nov 24 22:12 runtime_log.err
[2025-11-24 22:12:11] -rw-------. 1 boinc boinc       662 Nov 24 22:12 LN8NDmZeHg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJVGKDmrh5Ttn.diag
[2025-11-24 22:12:11] -rw-r--r--. 1 boinc boinc     21519 Nov 24 22:12 stderr.txt
[2025-11-24 22:12:11] HITS file was successfully produced:
[2025-11-24 22:12:11] -rw-------. 1 boinc boinc 910137656 Nov 24 22:08 shared/HITS.pool.root.1
[2025-11-24 22:12:11]  *** Contents of shared directory: ***
[2025-11-24 22:12:11] total 1301964
[2025-11-24 22:12:11] -rw-r--r--. 2 boinc boinc 409864509 Nov 24 00:49 ATLAS.root_0
[2025-11-24 22:12:11] -rw-r--r--. 2 boinc boinc     15847 Nov 24 00:49 start_atlas.sh
[2025-11-24 22:12:11] -rw-r--r--. 2 boinc boinc    590095 Nov 24 00:49 input.tar.gz
[2025-11-24 22:12:11] -rw-------. 1 boinc boinc 910137656 Nov 24 22:08 HITS.pool.root.1
[2025-11-24 22:12:11] -rw-------. 1 boinc boinc  12595200 Nov 24 22:12 result.tar.gz
22:12:13 (1293): run_atlas exited; CPU time 332308.435675
22:12:13 (1293): called boinc_finish(0)

</stderr_txt>
]]>

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