Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:52 (2272151): wrapper (7.7.26015): starting
00:02:52 (2272151): wrapper: running run_atlas (--nthreads 9)
[2025-11-21 00:02:52] Arguments: --nthreads 9
[2025-11-21 00:02:52] Threads: 9
[2025-11-21 00:02:52] Checking for CVMFS
[2025-11-21 00:02:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 00:02:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 00:02:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 00:02:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 00:02:53] 2.13.2.0 9698 26198 260376 153108 2 73 38541523 40960000 10767 16776704 0 21956035 99.579 19842256 27015 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 00:02:53] CVMFS is ok
[2025-11-21 00:02:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:02:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:02:53] Further information can be found at the LHC@home message board.
[2025-11-21 00:02:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:02:53] Checking for apptainer binary...
[2025-11-21 00:02:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 00:02:53] Running /usr/bin/apptainer --version
[2025-11-21 00:02:53] apptainer version 1.4.4-1.el9
[2025-11-21 00:02:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:02:53] c-210-8.aglt2.org
[2025-11-21 00:02:53] apptainer works
[2025-11-21 00:02:53] Set ATHENA_PROC_NUMBER=9
[2025-11-21 00:02:53] Set ATHENA_CORE_NUMBER=9
[2025-11-21 00:02:53] Starting ATLAS job with PandaID=6893862562
[2025-11-21 00:02:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 12:22:52]  *** The last 200 lines of the pilot log: ***
[2025-11-21 12:22:52] 2025-11-21 17:21:14,094 | INFO     | monitor loop #3025: job 0:6893862562 is in state 'finished'
[2025-11-21 12:22:52] 2025-11-21 17:21:14,111 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 12:22:52] 2025-11-21 17:21:15,266 | INFO     | time since job start (44287s) is within the limit (172800.0s)
[2025-11-21 12:22:52] 2025-11-21 17:21:16,620 | INFO     | monitor loop #3026: job 0:6893862562 is in state 'finished'
[2025-11-21 12:22:52] 2025-11-21 17:21:16,620 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 12:22:52] 2025-11-21 17:21:17,273 | INFO     | time since job start (44289s) is within the limit (172800.0s)
[2025-11-21 12:22:52] 2025-11-21 17:21:19,137 | INFO     | monitor loop #3027: job 0:6893862562 is in state 'finished'
[2025-11-21 12:22:52] 2025-11-21 17:21:19,161 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 12:22:52] 2025-11-21 17:21:19,316 | INFO     | time since job start (44291s) is within the limit (172800.0s)
[2025-11-21 12:22:52] 2025-11-21 17:21:20,887 | INFO     | PID=2279144 has CPU usage=9.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 12:22:52] 2025-11-21 17:21:20,888 | INFO     | .. there are 17 such processes running
[2025-11-21 12:22:52] 2025-11-21 17:21:21,671 | INFO     | monitor loop #3028: job 0:6893862562 is in state 'finished'
[2025-11-21 12:22:52] 2025-11-21 17:21:21,671 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 12:22:52] 2025-11-21 17:21:21,889 | INFO     | time since job start (44293s) is within the limit (172800.0s)
[2025-11-21 12:22:52] 2025-11-21 17:21:23,896 | INFO     | time since job start (44295s) is within the limit (172800.0s)
[2025-11-21 12:22:52] 2025-11-21 17:21:24,180 | INFO     | monitor loop #3029: job 0:6893862562 is in state 'finished'
[2025-11-21 12:22:52] 2025-11-21 17:21:24,180 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 12:22:52] 2025-11-21 17:21:24,395 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 12:22:52] 2025-11-21 17:21:24,404 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2650.2275
[2025-11-21 12:22:52] 2025-11-21 17:21:24,414 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6893862562/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 12:22:52] 2025-11-21 17:21:24,415 | INFO     | extracted standard info from prmon json
[2025-11-21 12:22:52] 2025-11-21 17:21:24,415 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 12:22:52] 2025-11-21 17:21:24,415 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 12:22:52] 2025-11-21 17:21:24,429 | INFO     | fitting pss+swap vs Time
[2025-11-21 12:22:52] 2025-11-21 17:21:24,430 | INFO     | sum of square deviations: 118641085622.1609
[2025-11-21 12:22:52] 2025-11-21 17:21:24,444 | INFO     | sum of deviations: 804820308913.8268
[2025-11-21 12:22:52] 2025-11-21 17:21:24,444 | INFO     | mean x: 1763723532.8305786
[2025-11-21 12:22:52] 2025-11-21 17:21:24,445 | INFO     | mean y: 2966508.4132231404
[2025-11-21 12:22:52] 2025-11-21 17:21:24,445 | INFO     | intersect: -11961527166.669502
[2025-11-21 12:22:52] 2025-11-21 17:21:24,446 | INFO     | chi2: 15.674155440896833
[2025-11-21 12:22:52] 2025-11-21 17:21:24,447 | INFO     | sum of square deviations: 116206664825.74744
[2025-11-21 12:22:52] 2025-11-21 17:21:24,461 | INFO     | sum of deviations: 1063212686964.3491
[2025-11-21 12:22:52] 2025-11-21 17:21:24,461 | INFO     | mean x: 1763723380.3398058
[2025-11-21 12:22:52] 2025-11-21 17:21:24,462 | INFO     | mean y: 2982689.7822468793
[2025-11-21 12:22:52] 2025-11-21 17:21:24,462 | INFO     | intersect: -16133897902.091053
[2025-11-21 12:22:52] 2025-11-21 17:21:24,463 | INFO     | chi2: 11.988936714212157
[2025-11-21 12:22:52] 2025-11-21 17:21:24,463 | INFO     | current chi2=11.988936714212157 (change=23.51143409659728 %)
[2025-11-21 12:22:52] 2025-11-21 17:21:24,463 | INFO     | right removable region: 720
[2025-11-21 12:22:52] 2025-11-21 17:21:24,464 | INFO     | sum of square deviations: 116206163651.1014
[2025-11-21 12:22:52] 2025-11-21 17:21:24,478 | INFO     | sum of deviations: 598604211445.9662
[2025-11-21 12:22:52] 2025-11-21 17:21:24,478 | INFO     | mean x: 1763723685.3370318
[2025-11-21 12:22:52] 2025-11-21 17:21:24,479 | INFO     | mean y: 2979403.012482663
[2025-11-21 12:22:52] 2025-11-21 17:21:24,479 | INFO     | intersect: -9082359899.983608
[2025-11-21 12:22:52] 2025-11-21 17:21:24,480 | INFO     | chi2: 13.571031666187514
[2025-11-21 12:22:52] 2025-11-21 17:21:24,480 | INFO     | current chi2=13.571031666187514 (change=13.417780515445646 %)
[2025-11-21 12:22:52] 2025-11-21 17:21:24,480 | INFO     | left removable region: 10
[2025-11-21 12:22:52] 2025-11-21 17:21:24,481 | INFO     | sum of square deviations: 110967958490.95802
[2025-11-21 12:22:52] 2025-11-21 17:21:24,528 | INFO     | sum of deviations: 846467385824.9719
[2025-11-21 12:22:52] 2025-11-21 17:21:24,528 | INFO     | mean x: 1763723654.8450704
[2025-11-21 12:22:52] 2025-11-21 17:21:24,528 | INFO     | mean y: 3002748.963380282
[2025-11-21 12:22:52] 2025-11-21 17:21:24,565 | INFO     | intersect: -13450741662.816713
[2025-11-21 12:22:52] 2025-11-21 17:21:24,566 | INFO     | chi2: 9.137836936038848
[2025-11-21 12:22:52] 2025-11-21 17:21:24,566 | INFO     | current memory leak: 7.63 B/s (using 710 data points, chi2=9.14)
[2025-11-21 12:22:52] 2025-11-21 17:21:24,567 | INFO     | could have reported an average CPU frequency of 2652 MHz (28 samples)
[2025-11-21 12:22:52] 2025-11-21 17:21:24,567 | INFO     | ..............................
[2025-11-21 12:22:52] 2025-11-21 17:21:24,567 | INFO     | . Timing measurements:
[2025-11-21 12:22:52] 2025-11-21 17:21:24,568 | INFO     | . get job = 0 s
[2025-11-21 12:22:52] 2025-11-21 17:21:24,568 | INFO     | . initial setup = 2 s
[2025-11-21 12:22:52] 2025-11-21 17:21:24,568 | INFO     | . payload setup = 7 s
[2025-11-21 12:22:52] 2025-11-21 17:21:24,568 | INFO     | . stage-in = 0 s
[2025-11-21 12:22:52] 2025-11-21 17:21:24,568 | INFO     | . payload execution = 44239 s
[2025-11-21 12:22:52] 2025-11-21 17:21:24,568 | INFO     | . stage-out = 5 s
[2025-11-21 12:22:52] 2025-11-21 17:21:24,568 | INFO     | . log creation = 0 s
[2025-11-21 12:22:52] 2025-11-21 17:21:24,598 | INFO     | ..............................
[2025-11-21 12:22:52] 2025-11-21 17:21:24,814 | INFO     | 
[2025-11-21 12:22:52] 2025-11-21 17:21:24,814 | INFO     | job summary report
[2025-11-21 12:22:52] 2025-11-21 17:21:24,814 | INFO     | --------------------------------------------------
[2025-11-21 12:22:52] 2025-11-21 17:21:24,814 | INFO     | PanDA job id: 6893862562
[2025-11-21 12:22:52] 2025-11-21 17:21:24,814 | INFO     | task id: 47523449
[2025-11-21 12:22:52] 2025-11-21 17:21:24,815 | INFO     | errors: (none)
[2025-11-21 12:22:52] 2025-11-21 17:21:24,815 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 12:22:52] 2025-11-21 17:21:24,815 | INFO     | pilot state: finished 
[2025-11-21 12:22:52] 2025-11-21 17:21:24,815 | INFO     | transexitcode: 0
[2025-11-21 12:22:52] 2025-11-21 17:21:24,815 | INFO     | exeerrorcode: 0
[2025-11-21 12:22:52] 2025-11-21 17:21:24,815 | INFO     | exeerrordiag: 
[2025-11-21 12:22:52] 2025-11-21 17:21:24,815 | INFO     | exitcode: 0
[2025-11-21 12:22:52] 2025-11-21 17:21:24,815 | INFO     | exitmsg: OK
[2025-11-21 12:22:52] 2025-11-21 17:21:24,816 | INFO     | cpuconsumptiontime: 320813 s
[2025-11-21 12:22:52] 2025-11-21 17:21:24,816 | INFO     | nevents: 1000
[2025-11-21 12:22:52] 2025-11-21 17:21:24,816 | INFO     | neventsw: 0
[2025-11-21 12:22:52] 2025-11-21 17:21:24,816 | INFO     | pid: 2292583
[2025-11-21 12:22:52] 2025-11-21 17:21:24,816 | INFO     | pgrp: 2292583
[2025-11-21 12:22:52] 2025-11-21 17:21:24,816 | INFO     | corecount: 9
[2025-11-21 12:22:52] 2025-11-21 17:21:24,816 | INFO     | event service: False
[2025-11-21 12:22:52] 2025-11-21 17:21:24,816 | INFO     | sizes: {0: 2298806, 6: 2299068, 11: 2299096, 44250: 2344874, 44251: 2344873, 44256: 2353923, 44258: 2354107, 44279: 2354353}
[2025-11-21 12:22:52] 2025-11-21 17:21:24,817 | INFO     | --------------------------------------------------
[2025-11-21 12:22:52] 2025-11-21 17:21:24,817 | INFO     | 
[2025-11-21 12:22:52] 2025-11-21 17:21:24,817 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-21 12:22:52] 2025-11-21 17:21:24,860 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 12:22:52] 2025-11-21 17:21:24,860 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 12:22:52] 2025-11-21 17:21:24,860 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 12:22:52] 2025-11-21 17:21:24,861 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 12:22:52] 2025-11-21 17:21:24,861 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 12:22:52] 2025-11-21 17:21:24,861 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 12:22:52] 2025-11-21 17:21:24,861 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 12:22:52] 2025-11-21 17:21:24,861 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 12:22:52] 2025-11-21 17:21:24,861 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 12:22:52] 2025-11-21 17:21:24,861 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 12:22:52] 2025-11-21 17:21:24,861 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 12:22:52] 2025-11-21 17:21:24,861 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 12:22:52] 2025-11-21 17:21:24,862 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 12:22:52] 2025-11-21 17:21:24,862 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 12:22:52] 2025-11-21 17:21:24,862 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 12:22:52] 2025-11-21 17:21:24,862 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 12:22:52] 2025-11-21 17:21:24,862 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 12:22:52] 2025-11-21 17:21:24,862 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 12:22:52] 2025-11-21 17:21:24,862 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 12:22:52] 2025-11-21 17:21:24,871 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 12:22:52] 2025-11-21 17:21:24,871 | INFO     | job 6893862562 has completed (purged errors)
[2025-11-21 12:22:52] 2025-11-21 17:21:24,871 | INFO     | overall cleanup function is called
[2025-11-21 12:22:52] 2025-11-21 17:21:25,922 | INFO     | --- collectZombieJob: --- 10, [2292583]
[2025-11-21 12:22:52] 2025-11-21 17:21:25,923 | INFO     | zombie collector waiting for pid 2292583
[2025-11-21 12:22:52] 2025-11-21 17:21:25,923 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 12:22:52] 2025-11-21 17:21:25,923 | INFO     | collected zombie processes
[2025-11-21 12:22:52] 2025-11-21 17:21:25,923 | INFO     | will attempt to kill all subprocesses of pid=2292583
[2025-11-21 12:22:52] 2025-11-21 17:21:26,437 | INFO     | process IDs to be killed: [2292583] (in reverse order)
[2025-11-21 12:22:52] 2025-11-21 17:21:26,569 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 12:22:52] 2025-11-21 17:21:26,570 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 12:22:52] 2025-11-21 17:21:26,593 | INFO     | did not find any defunct processes belonging to 2292583
[2025-11-21 12:22:52] 2025-11-21 17:21:26,616 | INFO     | did not find any defunct processes belonging to 2292583
[2025-11-21 12:22:52] 2025-11-21 17:21:26,618 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 12:22:52] 2025-11-21 17:21:26,618 | INFO     | ready for new job
[2025-11-21 12:22:52] 2025-11-21 17:21:26,619 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 12:22:52] 2025-11-21 17:21:26,623 | INFO     | ***************************************
[2025-11-21 12:22:52] 2025-11-21 17:21:26,623 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 12:22:52] 2025-11-21 17:21:26,623 | INFO     | ***************************************
[2025-11-21 12:22:52] 2025-11-21 17:21:26,623 | INFO     | 
[2025-11-21 12:22:52] 2025-11-21 17:21:26,626 | INFO     | architecture information:
[2025-11-21 12:22:52] 2025-11-21 17:21:26,627 | INFO     | executing command: cat /etc/os-release
[2025-11-21 12:22:52] 2025-11-21 17:21:26,700 | INFO     | cat /etc/os-release:
[2025-11-21 12:22:52] NAME="CentOS Linux"
[2025-11-21 12:22:52] VERSION="7 (Core)"
[2025-11-21 12:22:52] ID="centos"
[2025-11-21 12:22:52] ID_LIKE="rhel fedora"
[2025-11-21 12:22:52] VERSION_ID="7"
[2025-11-21 12:22:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 12:22:52] ANSI_COLOR="0;31"
[2025-11-21 12:22:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 12:22:52] HOME_URL="https://www.centos.org/"
[2025-11-21 12:22:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 12:22:52] 
[2025-11-21 12:22:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 12:22:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 12:22:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 12:22:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 12:22:52] 
[2025-11-21 12:22:52] 2025-11-21 17:21:26,700 | INFO     | ***************************************
[2025-11-21 12:22:52] 2025-11-21 17:21:27,203 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-21 12:22:52] 2025-11-21 17:21:27,273 | INFO     | sufficient remaining disk space (58891173888 B)
[2025-11-21 12:22:52] 2025-11-21 17:21:27,274 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 12:22:52] 2025-11-21 17:21:27,274 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 12:22:52] 2025-11-21 17:21:27,274 | INFO     | update_server=False
[2025-11-21 12:22:52] 2025-11-21 17:21:27,274 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 12:22:52] 2025-11-21 17:21:27,321 | INFO     | all data control threads have been joined
[2025-11-21 12:22:52] 2025-11-21 17:21:27,640 | INFO     | all payload control threads have been joined
[2025-11-21 12:22:52] 2025-11-21 17:21:27,691 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 12:22:52] 2025-11-21 17:21:27,691 | INFO     | aborting loop
[2025-11-21 12:22:52] 2025-11-21 17:21:27,978 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 12:22:52] 2025-11-21 17:21:28,027 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 12:22:52] 2025-11-21 17:21:28,246 | INFO     | all job control threads have been joined
[2025-11-21 12:22:52] 2025-11-21 17:21:28,280 | INFO     | [job] retrieve thread has finished
[2025-11-21 12:22:52] 2025-11-21 17:21:28,328 | INFO     | [data] control thread has finished
[2025-11-21 12:22:52] 2025-11-21 17:21:28,446 | INFO     | [payload] validate_post thread has finished
[2025-11-21 12:22:52] 2025-11-21 17:21:28,646 | INFO     | [payload] control thread has finished
[2025-11-21 12:22:52] 2025-11-21 17:21:28,696 | INFO     | [job] job monitor thread has finished
[2025-11-21 12:22:52] 2025-11-21 17:21:29,201 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 12:22:52] 2025-11-21 17:21:29,260 | INFO     | [payload] failed_post thread has finished
[2025-11-21 12:22:52] 2025-11-21 17:21:29,265 | INFO     | [job] control thread has finished
[2025-11-21 12:22:52] 2025-11-21 17:21:29,328 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 12:22:52] 2025-11-21 17:21:29,352 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 12:22:52] 2025-11-21 17:21:29,494 | INFO     | [data] copytool_in thread has finished
[2025-11-21 12:22:52] 2025-11-21 17:21:29,745 | INFO     | [job] validate thread has finished
[2025-11-21 12:22:52] 2025-11-21 17:21:29,778 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 12:22:52] 2025-11-21 17:21:29,831 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 12:22:52] 2025-11-21 17:21:30,034 | INFO     | [data] copytool_out thread has finished
[2025-11-21 12:22:52] 2025-11-21 17:21:30,836 | INFO     | [job] queue monitor thread has finished
[2025-11-21 12:22:52] 2025-11-21 17:21:31,994 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 12:22:52] 2025-11-21 17:21:58,515 | INFO     | PID=2279144 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 12:22:52] 2025-11-21 17:21:58,545 | INFO     | .. there are 17 such processes running
[2025-11-21 12:22:52] 2025-11-21 17:21:58,545 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 12:22:52] 2025-11-21 17:21:58,545 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 12:22:52] 2025-11-21 17:21:58,545 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 12:22:52] 2025-11-21 17:22:23,583 | INFO     | [monitor] cgroup control has ended
[2025-11-21 12:22:52] 2025-11-21 17:22:24,521 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140151687583552)>', '<ExcThread(monitor, started 140151174960896)>']
[2025-11-21 12:22:52] 2025-11-21 17:22:24,886 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 12:22:52] 2025-11-21 17:22:24,887 | INFO     | [monitor] control thread has ended
[2025-11-21 12:22:52] 2025-11-21 17:22:29,547 | INFO     | all workflow threads have been joined
[2025-11-21 12:22:52] 2025-11-21 17:22:29,547 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 12:22:52] 2025-11-21 17:22:29,547 | INFO     | traces error code: 0
[2025-11-21 12:22:52] 2025-11-21 17:22:29,547 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 12:22:52] 2025-11-21 17:22:31,329 [wrapper] ==== pilot stdout END ====
[2025-11-21 12:22:52] 2025-11-21 17:22:31,428 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 12:22:52] 2025-11-21 17:22:31,671 [wrapper] pilotpid: 2279144
[2025-11-21 12:22:52] 2025-11-21 17:22:31,713 [wrapper] Pilot exit status: 0
[2025-11-21 12:22:52] 2025-11-21 17:22:31,807 [wrapper] pandaids: 6893862562
[2025-11-21 12:22:52] 2025-11-21 17:22:31,932 [wrapper] cleanup supervisor_pilot 3600087 2279145
[2025-11-21 12:22:52] 2025-11-21 17:22:31,935 [wrapper] Test setup, not cleaning
[2025-11-21 12:22:52] 2025-11-21 17:22:31,939 [wrapper] apfmon messages muted
[2025-11-21 12:22:52] 2025-11-21 17:22:31,942 [wrapper] ==== wrapper stdout END ====
[2025-11-21 12:22:52] 2025-11-21 17:22:31,944 [wrapper] ==== wrapper stderr END ====
[2025-11-21 12:22:52]  *** Error codes and diagnostics ***
[2025-11-21 12:22:52]     "exeErrorCode": 0,
[2025-11-21 12:22:52]     "exeErrorDiag": "",
[2025-11-21 12:22:52]     "pilotErrorCode": 0,
[2025-11-21 12:22:52]     "pilotErrorDiag": "",
[2025-11-21 12:22:52]  *** Listing of results directory ***
[2025-11-21 12:22:52] total 1304572
[2025-11-21 12:22:52] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 09:06 pilot3.tar.gz
[2025-11-21 12:22:52] -rwx------. 1 boincer umatlas     36292 Nov 20 09:09 runpilot2-wrapper.sh
[2025-11-21 12:22:52] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 09:09 queuedata.json
[2025-11-21 12:22:52] -rw-r--r--. 1 boincer umatlas       100 Nov 21 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 12:22:52] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 00:02 run_atlas
[2025-11-21 12:22:52] -rw-r--r--. 1 boincer umatlas       105 Nov 21 00:02 job.xml
[2025-11-21 12:22:52] -rw-r--r--. 2 boincer umatlas 410021400 Nov 21 00:02 EVNT.47493127._000590.pool.root.1
[2025-11-21 12:22:52] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 00:02 start_atlas.sh
[2025-11-21 12:22:52] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 00:02 shared
[2025-11-21 12:22:52] -rw-r--r--. 2 boincer umatlas    590097 Nov 21 00:02 input.tar.gz
[2025-11-21 12:22:52] -rw-r--r--. 1 boincer umatlas         0 Nov 21 00:02 boinc_lockfile
[2025-11-21 12:22:52] -rw-r--r--. 1 boincer umatlas      2785 Nov 21 00:02 pandaJob.out
[2025-11-21 12:22:52] -rw-------. 1 boincer umatlas        57 Nov 21 00:02 setup.sh.local
[2025-11-21 12:22:52] -rw-------. 1 boincer umatlas    989817 Nov 21 00:03 agis_schedconf.cvmfs.json
[2025-11-21 12:22:52] drwx------. 5 boincer umatlas      4096 Nov 21 00:03 pilot3
[2025-11-21 12:22:52] -rw-r--r--. 1 boincer umatlas       533 Nov 21 11:59 boinc_task_state.xml
[2025-11-21 12:22:52] -rw-------. 1 boincer umatlas 905631124 Nov 21 12:20 HITS.47523449._005896.pool.root.1
[2025-11-21 12:22:52] -rw-r--r--. 1 boincer umatlas      6613 Nov 21 12:20 init_data.xml
[2025-11-21 12:22:52] -rw-------. 1 boincer umatlas      1056 Nov 21 12:20 memory_monitor_summary.json
[2025-11-21 12:22:52] -rw-------. 1 boincer umatlas   1526164 Nov 21 12:21 agis_ddmendpoints.agis.ALL.json
[2025-11-21 12:22:52] -rw-------. 1 boincer umatlas   2090885 Nov 21 12:21 log.47523449._005896.job.log.tgz.1
[2025-11-21 12:22:52] -rw-------. 1 boincer umatlas        95 Nov 21 12:21 pilot_heartbeat.json
[2025-11-21 12:22:52] -rw-------. 1 boincer umatlas      8621 Nov 21 12:21 heartbeat.json
[2025-11-21 12:22:52] -rw-------. 1 boincer umatlas      4824 Nov 21 12:22 pilotlog.txt
[2025-11-21 12:22:52] -rw-------. 1 boincer umatlas   6061343 Nov 21 12:22 log.47523449._005896.job.log.1
[2025-11-21 12:22:52] -rw-------. 1 boincer umatlas       353 Nov 21 12:22 output.list
[2025-11-21 12:22:52] -rw-r--r--. 1 boincer umatlas       620 Nov 21 12:22 runtime_log
[2025-11-21 12:22:52] -rw-------. 1 boincer umatlas   8171520 Nov 21 12:22 result.tar.gz
[2025-11-21 12:22:52] -rw-r--r--. 1 boincer umatlas      9338 Nov 21 12:22 runtime_log.err
[2025-11-21 12:22:52] -rw-------. 1 boincer umatlas       659 Nov 21 12:22 kfoMDmTWKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQ2HKDmuqg15m.diag
[2025-11-21 12:22:52] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 12:22 boinc_mmap_file
[2025-11-21 12:22:52] -rw-r--r--. 1 boincer umatlas        29 Nov 21 12:22 wrapper_checkpoint.txt
[2025-11-21 12:22:52] -rw-r--r--. 1 boincer umatlas     21846 Nov 21 12:22 stderr.txt
[2025-11-21 12:22:52] HITS file was successfully produced:
[2025-11-21 12:22:52] -rw-------. 1 boincer umatlas 905631124 Nov 21 12:20 shared/HITS.pool.root.1
[2025-11-21 12:22:52]  *** Contents of shared directory: ***
[2025-11-21 12:22:52] total 1293404
[2025-11-21 12:22:52] -rw-r--r--. 2 boincer umatlas 410021400 Nov 21 00:02 ATLAS.root_0
[2025-11-21 12:22:52] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 00:02 start_atlas.sh
[2025-11-21 12:22:52] -rw-r--r--. 2 boincer umatlas    590097 Nov 21 00:02 input.tar.gz
[2025-11-21 12:22:52] -rw-------. 1 boincer umatlas 905631124 Nov 21 12:20 HITS.pool.root.1
[2025-11-21 12:22:52] -rw-------. 1 boincer umatlas   8171520 Nov 21 12:22 result.tar.gz
12:22:55 (2272151): run_atlas exited; CPU time 321801.102412
12:22:55 (2272151): called boinc_finish(0)

</stderr_txt>
]]>

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