Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:56:58 (3871): wrapper (7.7.26015): starting
02:56:58 (3871): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 02:56:58] Arguments: --nthreads 8
[2025-11-24 02:56:58] Threads: 8
[2025-11-24 02:56:58] Checking for CVMFS
[2025-11-24 02:56:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 02:56:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 02:56:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 02:57:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 02:57:00] 2.11.2.0 17769 281679 142676 153228 2 85 15913779 25165825 4632 130560 2 132870366 99.883 79184408 2907 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 02:57:00] CVMFS is ok
[2025-11-24 02:57:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 02:57:00] Checking for apptainer binary...
[2025-11-24 02:57:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 02:57:00] Running /usr/bin/apptainer --version
[2025-11-24 02:57:00] apptainer version 1.3.2-1.el7
[2025-11-24 02:57:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 02:57:26] cg-vwn290.simple-grid.lan
[2025-11-24 02:57:26] apptainer works
[2025-11-24 02:57:26] Set ATHENA_PROC_NUMBER=8
[2025-11-24 02:57:26] Set ATHENA_CORE_NUMBER=8
[2025-11-24 02:57:26] Starting ATLAS job with PandaID=6893861578
[2025-11-24 02:57:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 02:02:49]  *** The last 200 lines of the pilot log: ***
[2025-11-25 02:02:49] 2025-11-25 01:01:36,797 | INFO     | mean x: 1763991294.6179526
[2025-11-25 02:02:49] 2025-11-25 01:01:36,797 | INFO     | mean y: 2859753.3768545995
[2025-11-25 02:02:49] 2025-11-25 01:01:36,798 | INFO     | intersect: -10175270241.143883
[2025-11-25 02:02:49] 2025-11-25 01:01:36,799 | INFO     | chi2: 17.052798384388844
[2025-11-25 02:02:49] 2025-11-25 01:01:36,801 | INFO     | sum of square deviations: 751115312131.9738
[2025-11-25 02:02:49] 2025-11-25 01:01:36,871 | INFO     | sum of deviations: 4846201604349.242
[2025-11-25 02:02:49] 2025-11-25 01:01:36,871 | INFO     | mean x: 1763991142.1221147
[2025-11-25 02:02:49] 2025-11-25 01:01:36,872 | INFO     | mean y: 2868151.900967982
[2025-11-25 02:02:49] 2025-11-25 01:01:36,872 | INFO     | intersect: -11378415873.244844
[2025-11-25 02:02:49] 2025-11-25 01:01:36,873 | INFO     | chi2: 13.800676919970789
[2025-11-25 02:02:49] 2025-11-25 01:01:36,873 | INFO     | current chi2=13.800676919970789 (change=19.07089611400814 %)
[2025-11-25 02:02:49] 2025-11-25 01:01:36,874 | INFO     | right removable region: 1342
[2025-11-25 02:02:49] 2025-11-25 01:01:36,876 | INFO     | sum of square deviations: 751114392861.9722
[2025-11-25 02:02:49] 2025-11-25 01:01:36,935 | INFO     | sum of deviations: 3812241221305.4507
[2025-11-25 02:02:49] 2025-11-25 01:01:36,935 | INFO     | mean x: 1763991447.1221147
[2025-11-25 02:02:49] 2025-11-25 01:01:36,936 | INFO     | mean y: 2870079.7289650035
[2025-11-25 02:02:49] 2025-11-25 01:01:36,936 | INFO     | intersect: -8950174852.782331
[2025-11-25 02:02:49] 2025-11-25 01:01:36,937 | INFO     | chi2: 12.19738097432975
[2025-11-25 02:02:49] 2025-11-25 01:01:36,938 | INFO     | current chi2=12.19738097432975 (change=28.472848271659824 %)
[2025-11-25 02:02:49] 2025-11-25 01:01:36,940 | INFO     | sum of square deviations: 742755906743.1547
[2025-11-25 02:02:49] 2025-11-25 01:01:37,011 | INFO     | sum of deviations: 3315375039201.559
[2025-11-25 02:02:49] 2025-11-25 01:01:37,012 | INFO     | mean x: 1763991599.626308
[2025-11-25 02:02:49] 2025-11-25 01:01:37,012 | INFO     | mean y: 2879143.8191330344
[2025-11-25 02:02:49] 2025-11-25 01:01:37,012 | INFO     | intersect: -7870896972.490684
[2025-11-25 02:02:49] 2025-11-25 01:01:37,014 | INFO     | chi2: 8.635032226044043
[2025-11-25 02:02:49] 2025-11-25 01:01:37,014 | INFO     | current chi2=8.635032226044043 (change=29.205849647419573 %)
[2025-11-25 02:02:49] 2025-11-25 01:01:37,016 | INFO     | sum of square deviations: 734459654349.2883
[2025-11-25 02:02:49] 2025-11-25 01:01:37,064 | INFO     | sum of deviations: 2843068170579.099
[2025-11-25 02:02:49] 2025-11-25 01:01:37,064 | INFO     | mean x: 1763991752.1305327
[2025-11-25 02:02:49] 2025-11-25 01:01:37,064 | INFO     | mean y: 2887825.579894974
[2025-11-25 02:02:49] 2025-11-25 01:01:37,065 | INFO     | intersect: -6825463839.413414
[2025-11-25 02:02:49] 2025-11-25 01:01:37,066 | INFO     | chi2: 5.475657395799121
[2025-11-25 02:02:49] 2025-11-25 01:01:37,066 | INFO     | current chi2=5.475657395799121 (change=36.58787538413534 %)
[2025-11-25 02:02:49] 2025-11-25 01:01:37,068 | INFO     | sum of square deviations: 726225646694.6737
[2025-11-25 02:02:49] 2025-11-25 01:01:37,118 | INFO     | sum of deviations: 2648635688279.616
[2025-11-25 02:02:49] 2025-11-25 01:01:37,118 | INFO     | mean x: 1763991904.6325302
[2025-11-25 02:02:49] 2025-11-25 01:01:37,118 | INFO     | mean y: 2891423.013554217
[2025-11-25 02:02:49] 2025-11-25 01:01:37,119 | INFO     | intersect: -6430607495.278392
[2025-11-25 02:02:49] 2025-11-25 01:01:37,120 | INFO     | chi2: 4.891584383109265
[2025-11-25 02:02:49] 2025-11-25 01:01:37,120 | INFO     | current chi2=4.891584383109265 (change=10.666719454324362 %)
[2025-11-25 02:02:49] 2025-11-25 01:01:37,120 | INFO     | left removable region: 40
[2025-11-25 02:02:49] 2025-11-25 01:01:37,122 | INFO     | sum of square deviations: 684400964140.8922
[2025-11-25 02:02:49] 2025-11-25 01:01:37,137 | INFO     | monitor loop #5553: job 0:6893861578 is in state 'finished'
[2025-11-25 02:02:49] 2025-11-25 01:01:37,137 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:02:49] 2025-11-25 01:01:37,235 | INFO     | sum of deviations: 2939767223169.2295
[2025-11-25 02:02:49] 2025-11-25 01:01:37,236 | INFO     | mean x: 1763992331.6374807
[2025-11-25 02:02:49] 2025-11-25 01:01:37,236 | INFO     | mean y: 2907545.7780337944
[2025-11-25 02:02:49] 2025-11-25 01:01:37,236 | INFO     | intersect: -7574122748.121708
[2025-11-25 02:02:49] 2025-11-25 01:01:37,238 | INFO     | chi2: 0.5296156073511318
[2025-11-25 02:02:49] 2025-11-25 01:01:37,238 | INFO     | current memory leak: 4.30 B/s (using 1302 data points, chi2=0.53)
[2025-11-25 02:02:49] 2025-11-25 01:01:37,239 | INFO     | could have reported an average CPU frequency of 1999 MHz (45 samples)
[2025-11-25 02:02:49] 2025-11-25 01:01:37,240 | INFO     | ..............................
[2025-11-25 02:02:49] 2025-11-25 01:01:37,240 | INFO     | . Timing measurements:
[2025-11-25 02:02:49] 2025-11-25 01:01:37,240 | INFO     | . get job = 0 s
[2025-11-25 02:02:49] 2025-11-25 01:01:37,240 | INFO     | . initial setup = 7 s
[2025-11-25 02:02:49] 2025-11-25 01:01:37,240 | INFO     | . payload setup = 168 s
[2025-11-25 02:02:49] 2025-11-25 01:01:37,240 | INFO     | . stage-in = 0 s
[2025-11-25 02:02:49] 2025-11-25 01:01:37,240 | INFO     | . payload execution = 82380 s
[2025-11-25 02:02:49] 2025-11-25 01:01:37,240 | INFO     | . stage-out = 5 s
[2025-11-25 02:02:49] 2025-11-25 01:01:37,240 | INFO     | . log creation = 2 s
[2025-11-25 02:02:49] 2025-11-25 01:01:37,240 | INFO     | ..............................
[2025-11-25 02:02:49] 2025-11-25 01:01:37,464 | INFO     | 
[2025-11-25 02:02:49] 2025-11-25 01:01:37,464 | INFO     | job summary report
[2025-11-25 02:02:49] 2025-11-25 01:01:37,464 | INFO     | --------------------------------------------------
[2025-11-25 02:02:49] 2025-11-25 01:01:37,465 | INFO     | PanDA job id: 6893861578
[2025-11-25 02:02:49] 2025-11-25 01:01:37,465 | INFO     | task id: 47523449
[2025-11-25 02:02:49] 2025-11-25 01:01:37,465 | INFO     | errors: (none)
[2025-11-25 02:02:49] 2025-11-25 01:01:37,465 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 02:02:49] 2025-11-25 01:01:37,465 | INFO     | pilot state: finished 
[2025-11-25 02:02:49] 2025-11-25 01:01:37,465 | INFO     | transexitcode: 0
[2025-11-25 02:02:49] 2025-11-25 01:01:37,465 | INFO     | exeerrorcode: 0
[2025-11-25 02:02:49] 2025-11-25 01:01:37,465 | INFO     | exeerrordiag: 
[2025-11-25 02:02:49] 2025-11-25 01:01:37,465 | INFO     | exitcode: 0
[2025-11-25 02:02:49] 2025-11-25 01:01:37,466 | INFO     | exitmsg: OK
[2025-11-25 02:02:49] 2025-11-25 01:01:37,466 | INFO     | cpuconsumptiontime: 339352 s
[2025-11-25 02:02:49] 2025-11-25 01:01:37,466 | INFO     | nevents: 1000
[2025-11-25 02:02:49] 2025-11-25 01:01:37,466 | INFO     | neventsw: 0
[2025-11-25 02:02:49] 2025-11-25 01:01:37,466 | INFO     | pid: 14253
[2025-11-25 02:02:49] 2025-11-25 01:01:37,466 | INFO     | pgrp: 14253
[2025-11-25 02:02:49] 2025-11-25 01:01:37,466 | INFO     | corecount: 8
[2025-11-25 02:02:49] 2025-11-25 01:01:37,466 | INFO     | event service: False
[2025-11-25 02:02:49] 2025-11-25 01:01:37,467 | INFO     | sizes: {0: 2297928, 1: 2298614, 2: 2298813, 13: 2298813, 24: 2298869, 34: 2298897, 45: 2299053, 56: 2299081, 66: 2299109, 77: 2299137, 88: 2299193, 89: 2299763, 98
[2025-11-25 02:02:49] 2025-11-25 01:01:37,467 | INFO     | --------------------------------------------------
[2025-11-25 02:02:49] 2025-11-25 01:01:37,467 | INFO     | 
[2025-11-25 02:02:49] 2025-11-25 01:01:37,467 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-25 02:02:49] 2025-11-25 01:01:37,560 | INFO     | time since job start (82821s) is within the limit (172800.0s)
[2025-11-25 02:02:49] 2025-11-25 01:01:37,966 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 02:02:49] 2025-11-25 01:01:37,967 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 02:02:49] 2025-11-25 01:01:37,967 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 02:02:49] 2025-11-25 01:01:37,967 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 02:02:49] 2025-11-25 01:01:37,967 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 02:02:49] 2025-11-25 01:01:37,967 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 02:02:49] 2025-11-25 01:01:37,967 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 02:02:49] 2025-11-25 01:01:37,967 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 02:02:49] 2025-11-25 01:01:37,967 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 02:02:49] 2025-11-25 01:01:37,967 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 02:02:49] 2025-11-25 01:01:37,968 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 02:02:49] 2025-11-25 01:01:37,968 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 02:02:49] 2025-11-25 01:01:37,968 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 02:02:49] 2025-11-25 01:01:37,968 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 02:02:49] 2025-11-25 01:01:37,968 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 02:02:49] 2025-11-25 01:01:37,968 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 02:02:49] 2025-11-25 01:01:37,968 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 02:02:49] 2025-11-25 01:01:37,968 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 02:02:49] 2025-11-25 01:01:37,968 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 02:02:49] 2025-11-25 01:01:37,968 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 02:02:49] 2025-11-25 01:01:37,969 | INFO     | job 6893861578 has completed (purged errors)
[2025-11-25 02:02:49] 2025-11-25 01:01:37,969 | INFO     | overall cleanup function is called
[2025-11-25 02:02:49] 2025-11-25 01:01:38,992 | INFO     | --- collectZombieJob: --- 10, [14253]
[2025-11-25 02:02:49] 2025-11-25 01:01:38,992 | INFO     | zombie collector waiting for pid 14253
[2025-11-25 02:02:49] 2025-11-25 01:01:38,992 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 02:02:49] 2025-11-25 01:01:38,993 | INFO     | collected zombie processes
[2025-11-25 02:02:49] 2025-11-25 01:01:38,993 | INFO     | will attempt to kill all subprocesses of pid=14253
[2025-11-25 02:02:49] 2025-11-25 01:01:39,112 | INFO     | process IDs to be killed: [14253] (in reverse order)
[2025-11-25 02:02:49] 2025-11-25 01:01:40,037 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 02:02:49] 2025-11-25 01:01:40,037 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 02:02:49] 2025-11-25 01:01:40,040 | INFO     | did not find any defunct processes belonging to 14253
[2025-11-25 02:02:49] 2025-11-25 01:01:40,042 | INFO     | did not find any defunct processes belonging to 14253
[2025-11-25 02:02:49] 2025-11-25 01:01:40,108 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 02:02:49] 2025-11-25 01:01:40,109 | INFO     | ready for new job
[2025-11-25 02:02:49] 2025-11-25 01:01:40,109 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 02:02:49] 2025-11-25 01:01:40,114 | INFO     | ***************************************
[2025-11-25 02:02:49] 2025-11-25 01:01:40,114 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 02:02:49] 2025-11-25 01:01:40,114 | INFO     | ***************************************
[2025-11-25 02:02:49] 2025-11-25 01:01:40,114 | INFO     | 
[2025-11-25 02:02:49] 2025-11-25 01:01:40,115 | INFO     | pilot is running in a VM
[2025-11-25 02:02:49] 2025-11-25 01:01:40,115 | INFO     | architecture information:
[2025-11-25 02:02:49] 2025-11-25 01:01:40,126 | INFO     | executing command: cat /etc/os-release
[2025-11-25 02:02:49] 2025-11-25 01:01:40,342 | INFO     | cat /etc/os-release:
[2025-11-25 02:02:49] NAME="CentOS Linux"
[2025-11-25 02:02:49] VERSION="7 (Core)"
[2025-11-25 02:02:49] ID="centos"
[2025-11-25 02:02:49] ID_LIKE="rhel fedora"
[2025-11-25 02:02:49] VERSION_ID="7"
[2025-11-25 02:02:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 02:02:49] ANSI_COLOR="0;31"
[2025-11-25 02:02:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 02:02:49] HOME_URL="https://www.centos.org/"
[2025-11-25 02:02:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 02:02:49] 
[2025-11-25 02:02:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 02:02:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 02:02:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 02:02:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 02:02:49] 
[2025-11-25 02:02:49] 2025-11-25 01:01:40,343 | INFO     | ***************************************
[2025-11-25 02:02:49] 2025-11-25 01:01:40,846 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-25 02:02:49] 2025-11-25 01:01:40,991 | INFO     | sufficient remaining disk space (495385051136 B)
[2025-11-25 02:02:49] 2025-11-25 01:01:40,991 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 02:02:49] 2025-11-25 01:01:40,991 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 02:02:49] 2025-11-25 01:01:40,991 | INFO     | update_server=False
[2025-11-25 02:02:49] 2025-11-25 01:01:40,992 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 02:02:49] 2025-11-25 01:01:40,992 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:02:49] 2025-11-25 01:01:41,000 | INFO     | aborting loop
[2025-11-25 02:02:49] 2025-11-25 01:01:40,992 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 02:02:49] 2025-11-25 01:01:41,664 | INFO     | all data control threads have been joined
[2025-11-25 02:02:49] 2025-11-25 01:01:41,997 | INFO     | [job] retrieve thread has finished
[2025-11-25 02:02:49] 2025-11-25 01:01:42,006 | INFO     | [job] job monitor thread has finished
[2025-11-25 02:02:49] 2025-11-25 01:01:42,148 | INFO     | all payload control threads have been joined
[2025-11-25 02:02:49] 2025-11-25 01:01:42,301 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 02:02:49] 2025-11-25 01:01:42,379 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 02:02:49] 2025-11-25 01:01:42,388 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:02:49] 2025-11-25 01:01:42,431 | INFO     | [payload] validate_post thread has finished
[2025-11-25 02:02:49] 2025-11-25 01:01:42,489 | INFO     | all job control threads have been joined
[2025-11-25 02:02:49] 2025-11-25 01:01:42,587 | INFO     | [payload] failed_post thread has finished
[2025-11-25 02:02:49] 2025-11-25 01:01:42,670 | INFO     | [data] control thread has finished
[2025-11-25 02:02:49] 2025-11-25 01:01:42,672 | INFO     | [job] validate thread has finished
[2025-11-25 02:02:49] 2025-11-25 01:01:42,673 | INFO     | [data] copytool_in thread has finished
[2025-11-25 02:02:49] 2025-11-25 01:01:42,818 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 02:02:49] 2025-11-25 01:01:43,154 | INFO     | [payload] control thread has finished
[2025-11-25 02:02:49] 2025-11-25 01:01:43,394 | INFO     | [job] queue monitor thread has finished
[2025-11-25 02:02:49] 2025-11-25 01:01:43,405 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 02:02:49] 2025-11-25 01:01:43,429 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 02:02:49] 2025-11-25 01:01:43,495 | INFO     | [job] control thread has finished
[2025-11-25 02:02:49] 2025-11-25 01:01:44,307 | INFO     | [data] copytool_out thread has finished
[2025-11-25 02:02:49] 2025-11-25 01:01:45,010 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 02:02:49] 2025-11-25 01:02:10,815 | INFO     | PID=7681 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 02:02:49] 2025-11-25 01:02:10,815 | INFO     | .. there are 9 such processes running
[2025-11-25 02:02:49] 2025-11-25 01:02:10,816 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 02:02:49] 2025-11-25 01:02:10,816 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 02:02:49] 2025-11-25 01:02:10,816 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 02:02:49] 2025-11-25 01:02:22,069 [wrapper] supervise_pilot (15 min periods counter: 93)
[2025-11-25 02:02:49] 2025-11-25 01:02:39,890 | INFO     | [monitor] cgroup control has ended
[2025-11-25 02:02:49] 2025-11-25 01:02:41,247 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140608209708864)>', '<ExcThread(monitor, started 140607498483456)>']
[2025-11-25 02:02:49] 2025-11-25 01:02:41,998 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 02:02:49] 2025-11-25 01:02:41,998 | INFO     | [monitor] control thread has ended
[2025-11-25 02:02:49] 2025-11-25 01:02:46,273 | INFO     | all workflow threads have been joined
[2025-11-25 02:02:49] 2025-11-25 01:02:46,273 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 02:02:49] 2025-11-25 01:02:46,273 | INFO     | traces error code: 0
[2025-11-25 02:02:49] 2025-11-25 01:02:46,274 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 02:02:49] 2025-11-25 01:02:46,483 [wrapper] ==== pilot stdout END ====
[2025-11-25 02:02:49] 2025-11-25 01:02:46,492 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 02:02:49] 2025-11-25 01:02:46,669 [wrapper] pilotpid: 7681
[2025-11-25 02:02:49] 2025-11-25 01:02:46,751 [wrapper] Pilot exit status: 0
[2025-11-25 02:02:49] 2025-11-25 01:02:47,048 [wrapper] pandaids: 6893861578
[2025-11-25 02:02:49] 2025-11-25 01:02:47,302 [wrapper] cleanup supervisor_pilot 19289 7682
[2025-11-25 02:02:49] 2025-11-25 01:02:47,412 [wrapper] Test setup, not cleaning
[2025-11-25 02:02:49] 2025-11-25 01:02:47,493 [wrapper] apfmon messages muted
[2025-11-25 02:02:49] 2025-11-25 01:02:47,616 [wrapper] ==== wrapper stdout END ====
[2025-11-25 02:02:49] 2025-11-25 01:02:47,696 [wrapper] ==== wrapper stderr END ====
[2025-11-25 02:02:49]  *** Error codes and diagnostics ***
[2025-11-25 02:02:49]     "exeErrorCode": 0,
[2025-11-25 02:02:49]     "exeErrorDiag": "",
[2025-11-25 02:02:49]     "pilotErrorCode": 0,
[2025-11-25 02:02:49]     "pilotErrorDiag": "",
[2025-11-25 02:02:49]  *** Listing of results directory ***
[2025-11-25 02:02:49] total 1339852
[2025-11-25 02:02:49] -rw-r--r--. 1 boinc boinc    576529 Nov 20 14:50 pilot3.tar.gz
[2025-11-25 02:02:49] -rw-r--r--. 1 boinc boinc      5112 Nov 20 15:02 queuedata.json
[2025-11-25 02:02:49] -rwx------. 1 boinc boinc     36292 Nov 20 15:03 runpilot2-wrapper.sh
[2025-11-25 02:02:49] -rw-r--r--. 1 boinc boinc       100 Nov 24 02:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 02:02:49] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 02:56 run_atlas
[2025-11-25 02:02:49] -rw-r--r--. 1 boinc boinc       105 Nov 24 02:56 job.xml
[2025-11-25 02:02:49] -rw-r--r--. 2 boinc boinc 411557136 Nov 24 02:56 EVNT.47493127._000576.pool.root.1
[2025-11-25 02:02:49] -rw-r--r--. 1 boinc boinc      6392 Nov 24 02:56 init_data.xml
[2025-11-25 02:02:49] -rw-r--r--. 2 boinc boinc     15847 Nov 24 02:56 start_atlas.sh
[2025-11-25 02:02:49] drwxrwx--x. 2 boinc boinc        68 Nov 24 02:56 shared
[2025-11-25 02:02:49] -rw-r--r--. 2 boinc boinc    590101 Nov 24 02:56 input.tar.gz
[2025-11-25 02:02:49] -rw-r--r--. 1 boinc boinc         0 Nov 24 02:56 boinc_lockfile
[2025-11-25 02:02:49] -rw-r--r--. 1 boinc boinc      2785 Nov 24 02:57 pandaJob.out
[2025-11-25 02:02:49] -rw-------. 1 boinc boinc    989786 Nov 24 03:01 agis_schedconf.cvmfs.json
[2025-11-25 02:02:49] drwx------. 5 boinc boinc      4096 Nov 24 03:01 pilot3
[2025-11-25 02:02:49] -rw-r--r--. 1 boinc boinc       533 Nov 25 01:50 boinc_task_state.xml
[2025-11-25 02:02:49] -rw-------. 1 boinc boinc 929573671 Nov 25 01:59 HITS.47523449._005752.pool.root.1
[2025-11-25 02:02:49] -rw-------. 1 boinc boinc      1034 Nov 25 02:00 memory_monitor_summary.json
[2025-11-25 02:02:49] -rw-------. 1 boinc boinc   1516227 Nov 25 02:00 agis_ddmendpoints.agis.ALL.json
[2025-11-25 02:02:49] -rw-------. 1 boinc boinc   2461532 Nov 25 02:00 log.47523449._005752.job.log.tgz.1
[2025-11-25 02:02:49] -rw-------. 1 boinc boinc      8637 Nov 25 02:01 heartbeat.json
[2025-11-25 02:02:49] -rw-------. 1 boinc boinc        95 Nov 25 02:02 pilot_heartbeat.json
[2025-11-25 02:02:49] -rw-r--r--. 1 boinc boinc      8192 Nov 25 02:02 boinc_mmap_file
[2025-11-25 02:02:49] -rw-r--r--. 1 boinc boinc        29 Nov 25 02:02 wrapper_checkpoint.txt
[2025-11-25 02:02:49] -rw-------. 1 boinc boinc      4884 Nov 25 02:02 pilotlog.txt
[2025-11-25 02:02:49] -rw-------. 1 boinc boinc  11028644 Nov 25 02:02 log.47523449._005752.job.log.1
[2025-11-25 02:02:49] -rw-------. 1 boinc boinc       353 Nov 25 02:02 output.list
[2025-11-25 02:02:49] -rw-r--r--. 1 boinc boinc       620 Nov 25 02:02 runtime_log
[2025-11-25 02:02:49] -rw-------. 1 boinc boinc  13506560 Nov 25 02:02 result.tar.gz
[2025-11-25 02:02:49] -rw-------. 1 boinc boinc       662 Nov 25 02:02 zWGNDmWRKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmR1HKDmBXgqNm.diag
[2025-11-25 02:02:49] -rw-r--r--. 1 boinc boinc      8833 Nov 25 02:02 runtime_log.err
[2025-11-25 02:02:49] -rw-r--r--. 1 boinc boinc     20922 Nov 25 02:02 stderr.txt
[2025-11-25 02:02:50] HITS file was successfully produced:
[2025-11-25 02:02:50] -rw-------. 1 boinc boinc 929573671 Nov 25 01:59 shared/HITS.pool.root.1
[2025-11-25 02:02:50]  *** Contents of shared directory: ***
[2025-11-25 02:02:50] total 1323488
[2025-11-25 02:02:50] -rw-r--r--. 2 boinc boinc 411557136 Nov 24 02:56 ATLAS.root_0
[2025-11-25 02:02:50] -rw-r--r--. 2 boinc boinc     15847 Nov 24 02:56 start_atlas.sh
[2025-11-25 02:02:50] -rw-r--r--. 2 boinc boinc    590101 Nov 24 02:56 input.tar.gz
[2025-11-25 02:02:50] -rw-------. 1 boinc boinc 929573671 Nov 25 01:59 HITS.pool.root.1
[2025-11-25 02:02:50] -rw-------. 1 boinc boinc  13506560 Nov 25 02:02 result.tar.gz
02:02:51 (3871): run_atlas exited; CPU time 339625.440252
02:02:51 (3871): called boinc_finish(0)

</stderr_txt>
]]>

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