Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:00:15 (1479438): wrapper (7.7.26015): starting
02:00:15 (1479438): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 02:00:15] Arguments: --nthreads 4
[2025-11-21 02:00:15] Threads: 4
[2025-11-21 02:00:15] Checking for CVMFS
[2025-11-21 02:00:15] No cvmfs_config command found, will try listing directly
[2025-11-21 02:00:15] CVMFS is ok
[2025-11-21 02:00:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 02:00:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 02:00:15] Further information can be found at the LHC@home message board.
[2025-11-21 02:00:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 02:00:15] Checking for apptainer binary...
[2025-11-21 02:00:15] which: no apptainer in ((null))
[2025-11-21 02:00:15] apptainer is not installed, using version from CVMFS
[2025-11-21 02:00:15] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 02:00:15] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2025-11-21 02:00:15] apptainer works
[2025-11-21 02:00:15] Set ATHENA_PROC_NUMBER=4
[2025-11-21 02:00:15] Set ATHENA_CORE_NUMBER=4
[2025-11-21 02:00:15] Starting ATLAS job with PandaID=6893861426
[2025-11-21 02:00:15] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 01:42:17]  *** The last 200 lines of the pilot log: ***
[2025-11-22 01:42:17] 2025-11-22 00:32:56,526 | INFO     | using path: /scratch/boinc/var/slot36/slots/1/PanDA_Pilot-6893861426/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 01:42:17] 2025-11-22 00:32:56,527 | INFO     | extracted standard info from prmon json
[2025-11-22 01:42:17] 2025-11-22 00:32:56,527 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 01:42:17] 2025-11-22 00:32:56,527 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 01:42:17] 2025-11-22 00:32:56,554 | INFO     | fitting pss+swap vs Time
[2025-11-22 01:42:17] 2025-11-22 00:32:56,556 | INFO     | sum of square deviations: 830970697665.656
[2025-11-22 01:42:17] 2025-11-22 00:32:56,604 | INFO     | sum of deviations: 2138102168062.2407
[2025-11-22 01:42:17] 2025-11-22 00:32:56,605 | INFO     | mean x: 1763729187.072714
[2025-11-22 01:42:17] 2025-11-22 00:32:56,605 | INFO     | mean y: 2306321.264938805
[2025-11-22 01:42:17] 2025-11-22 00:32:56,605 | INFO     | intersect: -4535799786.866581
[2025-11-22 01:42:17] 2025-11-22 00:32:56,607 | INFO     | chi2: 4.219219768953285
[2025-11-22 01:42:17] 2025-11-22 00:32:56,609 | INFO     | sum of square deviations: 822029239890.6294
[2025-11-22 01:42:17] 2025-11-22 00:32:56,660 | INFO     | sum of deviations: 2424213614554.8984
[2025-11-22 01:42:17] 2025-11-22 00:32:56,660 | INFO     | mean x: 1763729034.5729768
[2025-11-22 01:42:17] 2025-11-22 00:32:56,660 | INFO     | mean y: 2311199.8475433527
[2025-11-22 01:42:17] 2025-11-22 00:32:56,660 | INFO     | intersect: -5199031684.946253
[2025-11-22 01:42:17] 2025-11-22 00:32:56,662 | INFO     | chi2: 2.1644151906558156
[2025-11-22 01:42:17] 2025-11-22 00:32:56,662 | INFO     | current chi2=2.1644151906558156 (change=48.70105590179368 %)
[2025-11-22 01:42:17] 2025-11-22 00:32:56,664 | INFO     | sum of square deviations: 813152155415.603
[2025-11-22 01:42:17] 2025-11-22 00:32:56,715 | INFO     | sum of deviations: 2514338898733.929
[2025-11-22 01:42:17] 2025-11-22 00:32:56,716 | INFO     | mean x: 1763728882.0732415
[2025-11-22 01:42:17] 2025-11-22 00:32:56,716 | INFO     | mean y: 2312747.4561276287
[2025-11-22 01:42:17] 2025-11-22 00:32:56,716 | INFO     | intersect: -5451294065.835443
[2025-11-22 01:42:17] 2025-11-22 00:32:56,718 | INFO     | chi2: 1.8993459112752302
[2025-11-22 01:42:17] 2025-11-22 00:32:56,718 | INFO     | current chi2=1.8993459112752302 (change=12.246692802976938 %)
[2025-11-22 01:42:17] 2025-11-22 00:32:56,718 | INFO     | right removable region: 1378
[2025-11-22 01:42:17] 2025-11-22 00:32:56,720 | INFO     | sum of square deviations: 822029178280.6295
[2025-11-22 01:42:17] 2025-11-22 00:32:56,771 | INFO     | sum of deviations: 1886137697658.802
[2025-11-22 01:42:17] 2025-11-22 00:32:56,771 | INFO     | mean x: 1763729339.5729768
[2025-11-22 01:42:17] 2025-11-22 00:32:56,772 | INFO     | mean y: 2310613.358381503
[2025-11-22 01:42:17] 2025-11-22 00:32:56,772 | INFO     | intersect: -4044548651.1673675
[2025-11-22 01:42:17] 2025-11-22 00:32:56,774 | INFO     | chi2: 2.4711675647196305
[2025-11-22 01:42:17] 2025-11-22 00:32:56,774 | INFO     | current chi2=2.4711675647196305 (change=41.43069809011906 %)
[2025-11-22 01:42:17] 2025-11-22 00:32:56,776 | INFO     | sum of square deviations: 813152032195.6029
[2025-11-22 01:42:17] 2025-11-22 00:32:56,825 | INFO     | sum of deviations: 1859631261357.7537
[2025-11-22 01:42:17] 2025-11-22 00:32:56,825 | INFO     | mean x: 1763729492.0732415
[2025-11-22 01:42:17] 2025-11-22 00:32:56,825 | INFO     | mean y: 2311068.5271936185
[2025-11-22 01:42:17] 2025-11-22 00:32:56,826 | INFO     | intersect: -4031235390.4073873
[2025-11-22 01:42:17] 2025-11-22 00:32:56,827 | INFO     | chi2: 2.470137492642917
[2025-11-22 01:42:17] 2025-11-22 00:32:56,828 | INFO     | current chi2=2.470137492642917 (change=0.04168361916932335 %)
[2025-11-22 01:42:17] 2025-11-22 00:32:56,828 | INFO     | left removable region: 20
[2025-11-22 01:42:17] 2025-11-22 00:32:56,830 | INFO     | sum of square deviations: 776565862145.9882
[2025-11-22 01:42:17] 2025-11-22 00:32:56,875 | INFO     | sum of deviations: 2207529215398.899
[2025-11-22 01:42:17] 2025-11-22 00:32:56,876 | INFO     | mean x: 1763729461.574374
[2025-11-22 01:42:17] 2025-11-22 00:32:56,876 | INFO     | mean y: 2318523.382179676
[2025-11-22 01:42:17] 2025-11-22 00:32:56,876 | INFO     | intersect: -5011402146.395675
[2025-11-22 01:42:17] 2025-11-22 00:32:56,878 | INFO     | chi2: 0.09948216593550165
[2025-11-22 01:42:17] 2025-11-22 00:32:56,878 | INFO     | current memory leak: 2.84 B/s (using 1358 data points, chi2=0.10)
[2025-11-22 01:42:17] 2025-11-22 00:32:56,880 | INFO     | could have reported an average CPU frequency of 2585 MHz (50 samples)
[2025-11-22 01:42:17] 2025-11-22 00:32:56,880 | INFO     | ..............................
[2025-11-22 01:42:17] 2025-11-22 00:32:56,880 | INFO     | . Timing measurements:
[2025-11-22 01:42:17] 2025-11-22 00:32:56,880 | INFO     | . get job = 0 s
[2025-11-22 01:42:17] 2025-11-22 00:32:56,880 | INFO     | . initial setup = 1 s
[2025-11-22 01:42:17] 2025-11-22 00:32:56,880 | INFO     | . payload setup = 5 s
[2025-11-22 01:42:17] 2025-11-22 00:32:56,880 | INFO     | . stage-in = 0 s
[2025-11-22 01:42:17] 2025-11-22 00:32:56,881 | INFO     | . payload execution = 84713 s
[2025-11-22 01:42:17] 2025-11-22 00:32:56,881 | INFO     | . stage-out = 3 s
[2025-11-22 01:42:17] 2025-11-22 00:32:56,881 | INFO     | . log creation = 0 s
[2025-11-22 01:42:17] 2025-11-22 00:32:56,881 | INFO     | ..............................
[2025-11-22 01:42:17] 2025-11-22 00:32:57,103 | INFO     | 
[2025-11-22 01:42:17] 2025-11-22 00:32:57,103 | INFO     | job summary report
[2025-11-22 01:42:17] 2025-11-22 00:32:57,104 | INFO     | --------------------------------------------------
[2025-11-22 01:42:17] 2025-11-22 00:32:57,104 | INFO     | PanDA job id: 6893861426
[2025-11-22 01:42:17] 2025-11-22 00:32:57,104 | INFO     | task id: 47523449
[2025-11-22 01:42:17] 2025-11-22 00:32:57,104 | INFO     | errors: (none)
[2025-11-22 01:42:17] 2025-11-22 00:32:57,104 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 01:42:17] 2025-11-22 00:32:57,104 | INFO     | pilot state: finished 
[2025-11-22 01:42:17] 2025-11-22 00:32:57,104 | INFO     | transexitcode: 0
[2025-11-22 01:42:17] 2025-11-22 00:32:57,105 | INFO     | exeerrorcode: 0
[2025-11-22 01:42:17] 2025-11-22 00:32:57,105 | INFO     | exeerrordiag: 
[2025-11-22 01:42:17] 2025-11-22 00:32:57,105 | INFO     | exitcode: 0
[2025-11-22 01:42:17] 2025-11-22 00:32:57,105 | INFO     | exitmsg: OK
[2025-11-22 01:42:17] 2025-11-22 00:32:57,105 | INFO     | cpuconsumptiontime: 318846 s
[2025-11-22 01:42:17] 2025-11-22 00:32:57,105 | INFO     | nevents: 1000
[2025-11-22 01:42:17] 2025-11-22 00:32:57,105 | INFO     | neventsw: 0
[2025-11-22 01:42:17] 2025-11-22 00:32:57,105 | INFO     | pid: 1490211
[2025-11-22 01:42:17] 2025-11-22 00:32:57,106 | INFO     | pgrp: 1490211
[2025-11-22 01:42:17] 2025-11-22 00:32:57,106 | INFO     | corecount: 4
[2025-11-22 01:42:17] 2025-11-22 00:32:57,106 | INFO     | event service: False
[2025-11-22 01:42:17] 2025-11-22 00:32:57,106 | INFO     | sizes: {0: 2297979, 1: 2298846, 5: 2299108, 12: 2299164, 84722: 2363906, 84726: 2372922, 84729: 2373106, 84734: 2373352}
[2025-11-22 01:42:17] 2025-11-22 00:32:57,106 | INFO     | --------------------------------------------------
[2025-11-22 01:42:17] 2025-11-22 00:32:57,106 | INFO     | 
[2025-11-22 01:42:17] 2025-11-22 00:32:57,106 | INFO     | executing command: ls -lF /scratch/boinc/var/slot36/slots/1
[2025-11-22 01:42:17] 2025-11-22 00:32:57,129 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 01:42:17] 2025-11-22 00:32:57,130 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 01:42:17] 2025-11-22 00:32:57,130 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 01:42:17] 2025-11-22 00:32:57,130 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 01:42:17] 2025-11-22 00:32:57,130 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 01:42:17] 2025-11-22 00:32:57,130 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 01:42:17] 2025-11-22 00:32:57,130 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 01:42:17] 2025-11-22 00:32:57,131 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 01:42:17] 2025-11-22 00:32:57,131 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 01:42:17] 2025-11-22 00:32:57,131 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 01:42:17] 2025-11-22 00:32:57,131 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 01:42:17] 2025-11-22 00:32:57,131 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 01:42:17] 2025-11-22 00:32:57,131 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 01:42:17] 2025-11-22 00:32:57,131 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 01:42:17] 2025-11-22 00:32:57,132 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 01:42:17] 2025-11-22 00:32:57,132 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 01:42:17] 2025-11-22 00:32:57,132 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 01:42:17] 2025-11-22 00:32:57,132 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 01:42:17] 2025-11-22 00:32:57,132 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 01:42:17] 2025-11-22 00:32:57,132 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 01:42:17] 2025-11-22 00:32:57,133 | INFO     | job 6893861426 has completed (purged errors)
[2025-11-22 01:42:17] 2025-11-22 00:32:57,133 | INFO     | overall cleanup function is called
[2025-11-22 01:42:17] 2025-11-22 00:32:57,526 | INFO     | PID=1483451 has CPU usage=18.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-22 01:42:17] 2025-11-22 00:32:57,526 | INFO     | .. there are 3 such processes running
[2025-11-22 01:42:17] 2025-11-22 00:32:58,154 | INFO     | --- collectZombieJob: --- 10, [1490211]
[2025-11-22 01:42:17] 2025-11-22 00:32:58,154 | INFO     | zombie collector waiting for pid 1490211
[2025-11-22 01:42:17] 2025-11-22 00:32:58,156 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 01:42:17] 2025-11-22 00:32:58,156 | INFO     | collected zombie processes
[2025-11-22 01:42:17] 2025-11-22 00:32:58,156 | INFO     | will attempt to kill all subprocesses of pid=1490211
[2025-11-22 01:42:17] 2025-11-22 00:32:58,498 | INFO     | process IDs to be killed: [1490211] (in reverse order)
[2025-11-22 01:42:17] 2025-11-22 00:32:58,586 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 01:42:17] 2025-11-22 00:32:58,587 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 01:42:17] 2025-11-22 00:32:58,596 | INFO     | did not find any defunct processes belonging to 1490211
[2025-11-22 01:42:17] 2025-11-22 00:32:58,604 | INFO     | did not find any defunct processes belonging to 1490211
[2025-11-22 01:42:17] 2025-11-22 00:32:58,605 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 01:42:17] 2025-11-22 00:32:58,606 | INFO     | ready for new job
[2025-11-22 01:42:17] 2025-11-22 00:32:58,606 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 01:42:17] 2025-11-22 00:32:58,612 | INFO     | ***************************************
[2025-11-22 01:42:17] 2025-11-22 00:32:58,612 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 01:42:17] 2025-11-22 00:32:58,612 | INFO     | ***************************************
[2025-11-22 01:42:17] 2025-11-22 00:32:58,612 | INFO     | 
[2025-11-22 01:42:17] 2025-11-22 00:32:58,615 | INFO     | architecture information:
[2025-11-22 01:42:17] 2025-11-22 00:32:58,616 | INFO     | executing command: cat /etc/os-release
[2025-11-22 01:42:17] 2025-11-22 00:32:58,630 | INFO     | cat /etc/os-release:
[2025-11-22 01:42:17] NAME="CentOS Linux"
[2025-11-22 01:42:17] VERSION="7 (Core)"
[2025-11-22 01:42:17] ID="centos"
[2025-11-22 01:42:17] ID_LIKE="rhel fedora"
[2025-11-22 01:42:17] VERSION_ID="7"
[2025-11-22 01:42:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 01:42:17] ANSI_COLOR="0;31"
[2025-11-22 01:42:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 01:42:17] HOME_URL="https://www.centos.org/"
[2025-11-22 01:42:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 01:42:17] 
[2025-11-22 01:42:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 01:42:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 01:42:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 01:42:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 01:42:17] 
[2025-11-22 01:42:17] 2025-11-22 00:32:58,631 | INFO     | ***************************************
[2025-11-22 01:42:17] 2025-11-22 00:32:59,133 | INFO     | executing command: df -mP /scratch/boinc/var/slot36/slots/1
[2025-11-22 01:42:17] 2025-11-22 00:32:59,146 | INFO     | sufficient remaining disk space (1672868790272 B)
[2025-11-22 01:42:17] 2025-11-22 00:32:59,146 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 01:42:17] 2025-11-22 00:32:59,147 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 01:42:17] 2025-11-22 00:32:59,147 | INFO     | update_server=False
[2025-11-22 01:42:17] 2025-11-22 00:32:59,147 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 01:42:17] 2025-11-22 00:32:59,484 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 01:42:17] 2025-11-22 00:32:59,485 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 01:42:17] 2025-11-22 00:32:59,485 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 01:42:17] 2025-11-22 00:32:59,485 | INFO     | will abort loop
[2025-11-22 01:42:17] 2025-11-22 00:32:59,597 | INFO     | all payload control threads have been joined
[2025-11-22 01:42:17] 2025-11-22 00:32:59,609 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 01:42:17] 2025-11-22 00:32:59,829 | INFO     | all data control threads have been joined
[2025-11-22 01:42:17] 2025-11-22 00:33:00,152 | INFO     | [job] retrieve thread has finished
[2025-11-22 01:42:17] 2025-11-22 00:33:00,164 | INFO     | all job control threads have been joined
[2025-11-22 01:42:17] 2025-11-22 00:33:00,245 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 01:42:17] 2025-11-22 00:33:00,376 | INFO     | [payload] failed_post thread has finished
[2025-11-22 01:42:17] 2025-11-22 00:33:00,376 | INFO     | [payload] validate_post thread has finished
[2025-11-22 01:42:17] 2025-11-22 00:33:00,491 | INFO     | [job] job monitor thread has finished
[2025-11-22 01:42:17] 2025-11-22 00:33:00,501 | INFO     | [job] validate thread has finished
[2025-11-22 01:42:17] 2025-11-22 00:33:00,510 | INFO     | [data] copytool_in thread has finished
[2025-11-22 01:42:17] 2025-11-22 00:33:00,602 | INFO     | [payload] control thread has finished
[2025-11-22 01:42:17] 2025-11-22 00:33:00,834 | INFO     | [data] control thread has finished
[2025-11-22 01:42:17] 2025-11-22 00:33:00,859 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 01:42:17] 2025-11-22 00:33:01,169 | INFO     | [job] control thread has finished
[2025-11-22 01:42:17] 2025-11-22 00:33:01,460 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 01:42:17] 2025-11-22 00:33:01,614 | INFO     | [data] copytool_out thread has finished
[2025-11-22 01:42:17] 2025-11-22 00:33:02,003 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 01:42:17] 2025-11-22 00:33:02,188 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 01:42:17] 2025-11-22 00:33:03,008 | INFO     | [job] queue monitor thread has finished
[2025-11-22 01:42:17] 2025-11-22 00:33:06,193 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 01:42:17] 2025-11-22 00:33:09,886 | INFO     | job.realtimelogging is not enabled
[2025-11-22 01:42:17] 2025-11-22 00:33:10,891 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 01:42:17] 2025-11-22 00:33:30,036 | INFO     | PID=1483451 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 01:42:17] 2025-11-22 00:33:30,036 | INFO     | .. there are 3 such processes running
[2025-11-22 01:42:17] 2025-11-22 00:33:30,036 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 01:42:17] 2025-11-22 00:33:30,037 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 01:42:17] 2025-11-22 00:33:30,037 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 01:42:17] 2025-11-22 00:33:49,899 | INFO     | [monitor] cgroup control has ended
[2025-11-22 01:42:17] 2025-11-22 00:33:51,809 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23443442059072)>', '<ExcThread(monitor, started 23442998937344)>']
[2025-11-22 01:42:17] 2025-11-22 00:33:52,143 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 01:42:17] 2025-11-22 00:33:52,143 | INFO     | [monitor] control thread has ended
[2025-11-22 01:42:17] 2025-11-22 00:33:56,834 | INFO     | all workflow threads have been joined
[2025-11-22 01:42:17] 2025-11-22 00:33:56,834 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 01:42:17] 2025-11-22 00:33:56,834 | INFO     | traces error code: 0
[2025-11-22 01:42:17] 2025-11-22 00:33:56,835 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 01:42:17] 2025-11-22 00:33:56,961 [wrapper] ==== pilot stdout END ====
[2025-11-22 01:42:17] 2025-11-22 00:33:56,964 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 01:42:17] 2025-11-22 00:33:56,966 [wrapper] pilotpid: 1483451
[2025-11-22 01:42:17] 2025-11-22 00:33:56,968 [wrapper] Pilot exit status: 0
[2025-11-22 01:42:17] 2025-11-22 00:33:56,977 [wrapper] pandaids: 6893861426
[2025-11-22 01:42:17] 2025-11-22 00:33:57,035 [wrapper] cleanup supervisor_pilot 2479470 1483452
[2025-11-22 01:42:17] 2025-11-22 00:33:57,038 [wrapper] Test setup, not cleaning
[2025-11-22 01:42:17] 2025-11-22 00:33:57,040 [wrapper] apfmon messages muted
[2025-11-22 01:42:17] 2025-11-22 00:33:57,043 [wrapper] ==== wrapper stdout END ====
[2025-11-22 01:42:17] 2025-11-22 00:33:57,045 [wrapper] ==== wrapper stderr END ====
[2025-11-22 01:42:17]  *** Error codes and diagnostics ***
[2025-11-22 01:42:17]     "exeErrorCode": 0,
[2025-11-22 01:42:17]     "exeErrorDiag": "",
[2025-11-22 01:42:17]     "pilotErrorCode": 0,
[2025-11-22 01:42:17]     "pilotErrorDiag": "",
[2025-11-22 01:42:17]  *** Listing of results directory ***
[2025-11-22 01:42:17] total 1320584
[2025-11-22 01:42:17] -rw-r--r-- 1 boinc boinc    576529 Nov 20 14:50 pilot3.tar.gz
[2025-11-22 01:42:17] -rwx------ 1 boinc boinc     36292 Nov 20 14:54 runpilot2-wrapper.sh
[2025-11-22 01:42:17] -rw-r--r-- 1 boinc boinc      5112 Nov 20 14:54 queuedata.json
[2025-11-22 01:42:17] -rw-r--r-- 1 boinc boinc       100 Nov 21 00:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 01:42:17] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 00:49 run_atlas
[2025-11-22 01:42:17] -rw-r--r-- 1 boinc boinc       105 Nov 21 00:49 job.xml
[2025-11-22 01:42:17] -rw-r--r-- 2 boinc boinc 408874893 Nov 21 02:00 EVNT.47493127._000566.pool.root.1
[2025-11-22 01:42:17] -rw-r--r-- 1 boinc boinc      6419 Nov 21 02:00 init_data.xml
[2025-11-22 01:42:17] -rw-r--r-- 2 boinc boinc     15847 Nov 21 02:00 start_atlas.sh
[2025-11-22 01:42:17] drwxrwx--x 2 boinc boinc      4096 Nov 21 02:00 shared
[2025-11-22 01:42:17] -rw-r--r-- 2 boinc boinc    590099 Nov 21 02:00 input.tar.gz
[2025-11-22 01:42:17] -rw-r--r-- 1 boinc boinc         0 Nov 21 02:00 boinc_lockfile
[2025-11-22 01:42:17] -rw-r--r-- 1 boinc boinc      2786 Nov 21 02:00 pandaJob.out
[2025-11-22 01:42:17] -rw------- 1 boinc boinc    989817 Nov 21 02:00 agis_schedconf.cvmfs.json
[2025-11-22 01:42:17] drwx------ 5 boinc boinc      4096 Nov 21 02:00 pilot3
[2025-11-22 01:42:17] -rw-r--r-- 1 boinc boinc       531 Nov 22 01:21 boinc_task_state.xml
[2025-11-22 01:42:17] -rw------- 1 boinc boinc 911830454 Nov 22 01:32 HITS.47523449._005656.pool.root.1
[2025-11-22 01:42:17] -rw------- 1 boinc boinc      1045 Nov 22 01:32 memory_monitor_summary.json
[2025-11-22 01:42:17] -rw------- 1 boinc boinc        95 Nov 22 01:32 pilot_heartbeat.json
[2025-11-22 01:42:17] -rw------- 1 boinc boinc   1526164 Nov 22 01:32 agis_ddmendpoints.agis.ALL.json
[2025-11-22 01:42:17] -rw------- 1 boinc boinc   2019792 Nov 22 01:32 log.47523449._005656.job.log.tgz.1
[2025-11-22 01:42:17] -rw------- 1 boinc boinc      8633 Nov 22 01:32 heartbeat.json
[2025-11-22 01:42:17] -rw------- 1 boinc boinc      5092 Nov 22 01:33 pilotlog.txt
[2025-11-22 01:42:17] -rw------- 1 boinc boinc  11805309 Nov 22 01:33 log.47523449._005656.job.log.1
[2025-11-22 01:42:17] -rw------- 1 boinc boinc       353 Nov 22 01:33 output.list
[2025-11-22 01:42:17] -rw-r--r-- 1 boinc boinc       620 Nov 22 01:33 runtime_log
[2025-11-22 01:42:17] -rw------- 1 boinc boinc  13844480 Nov 22 01:33 result.tar.gz
[2025-11-22 01:42:17] -rw-r--r-- 1 boinc boinc      9206 Nov 22 01:33 runtime_log.err
[2025-11-22 01:42:17] -rw------- 1 boinc boinc       672 Nov 22 01:33 k2bMDmSIKg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm8kGKDmLtkG5m.diag
[2025-11-22 01:42:17] -rw-r--r-- 1 boinc boinc        27 Nov 22 01:42 wrapper_checkpoint.txt
[2025-11-22 01:42:17] -rw-r--r-- 1 boinc boinc      8192 Nov 22 01:42 boinc_mmap_file
[2025-11-22 01:42:17] -rw-r--r-- 1 boinc boinc     21156 Nov 22 01:42 stderr.txt
[2025-11-22 01:42:17] HITS file was successfully produced:
[2025-11-22 01:42:17] -rw------- 1 boinc boinc 911830454 Nov 22 01:32 shared/HITS.pool.root.1
[2025-11-22 01:42:17]  *** Contents of shared directory: ***
[2025-11-22 01:42:17] total 1303876
[2025-11-22 01:42:17] -rw-r--r-- 2 boinc boinc 408874893 Nov 21 02:00 ATLAS.root_0
[2025-11-22 01:42:17] -rw-r--r-- 2 boinc boinc     15847 Nov 21 02:00 start_atlas.sh
[2025-11-22 01:42:17] -rw-r--r-- 2 boinc boinc    590099 Nov 21 02:00 input.tar.gz
[2025-11-22 01:42:17] -rw------- 1 boinc boinc 911830454 Nov 22 01:32 HITS.pool.root.1
[2025-11-22 01:42:17] -rw------- 1 boinc boinc  13844480 Nov 22 01:33 result.tar.gz
01:42:19 (1479438): run_atlas exited; CPU time 321932.519593
01:42:19 (1479438): called boinc_finish(0)

</stderr_txt>
]]>

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