Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:20:01 (1005172): wrapper (7.7.26015): starting
02:20:01 (1005172): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 02:20:01] Arguments: --nthreads 4
[2025-11-21 02:20:01] Threads: 4
[2025-11-21 02:20:01] Checking for CVMFS
[2025-11-21 02:20:01] No cvmfs_config command found, will try listing directly
[2025-11-21 02:20:01] CVMFS is ok
[2025-11-21 02:20:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 02:20:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 02:20:01] Further information can be found at the LHC@home message board.
[2025-11-21 02:20:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 02:20:01] Checking for apptainer binary...
[2025-11-21 02:20:01] which: no apptainer in ((null))
[2025-11-21 02:20:01] apptainer is not installed, using version from CVMFS
[2025-11-21 02:20:01] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 02:20:02] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot100/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2025-11-21 02:20:02] apptainer works
[2025-11-21 02:20:02] Set ATHENA_PROC_NUMBER=4
[2025-11-21 02:20:02] Set ATHENA_CORE_NUMBER=4
[2025-11-21 02:20:02] Starting ATLAS job with PandaID=6893861590
[2025-11-21 02:20:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot100/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 18:27:49]  *** The last 200 lines of the pilot log: ***
[2025-11-21 18:27:49] 2025-11-21 17:21:51,500 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 18:27:49] 2025-11-21 17:21:51,520 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2658.038906250001
[2025-11-21 18:27:49] 2025-11-21 17:21:51,544 | INFO     | using path: /scratch/boinc/var/slot100/slots/0/PanDA_Pilot-6893861590/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 18:27:49] 2025-11-21 17:21:51,545 | INFO     | extracted standard info from prmon json
[2025-11-21 18:27:49] 2025-11-21 17:21:51,545 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 18:27:49] 2025-11-21 17:21:51,545 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 18:27:49] 2025-11-21 17:21:51,560 | INFO     | fitting pss+swap vs Time
[2025-11-21 18:27:49] 2025-11-21 17:21:51,562 | INFO     | sum of square deviations: 261681877992.53326
[2025-11-21 18:27:49] 2025-11-21 17:21:51,582 | INFO     | sum of deviations: 586323298083.1108
[2025-11-21 18:27:49] 2025-11-21 17:21:51,582 | INFO     | mean x: 1763716845.0222223
[2025-11-21 18:27:49] 2025-11-21 17:21:51,583 | INFO     | mean y: 2275292.8994708993
[2025-11-21 18:27:49] 2025-11-21 17:21:51,583 | INFO     | intersect: -3949501136.524026
[2025-11-21 18:27:49] 2025-11-21 17:21:51,584 | INFO     | chi2: 3.928434081238236
[2025-11-21 18:27:49] 2025-11-21 17:21:51,585 | INFO     | sum of square deviations: 257550141812.53104
[2025-11-21 18:27:49] 2025-11-21 17:21:51,604 | INFO     | sum of deviations: 760852129872.2682
[2025-11-21 18:27:49] 2025-11-21 17:21:51,605 | INFO     | mean x: 1763716692.5223405
[2025-11-21 18:27:49] 2025-11-21 17:21:51,605 | INFO     | mean y: 2281726.9872340425
[2025-11-21 18:27:49] 2025-11-21 17:21:51,605 | INFO     | intersect: -5208073012.299515
[2025-11-21 18:27:49] 2025-11-21 17:21:51,606 | INFO     | chi2: 2.001168155263185
[2025-11-21 18:27:49] 2025-11-21 17:21:51,606 | INFO     | current chi2=2.001168155263185 (change=49.05939328801414 %)
[2025-11-21 18:27:49] 2025-11-21 17:21:51,607 | INFO     | sum of square deviations: 253462127382.5284
[2025-11-21 18:27:49] 2025-11-21 17:21:51,626 | INFO     | sum of deviations: 763256131072.09
[2025-11-21 18:27:49] 2025-11-21 17:21:51,626 | INFO     | mean x: 1763716540.02246
[2025-11-21 18:27:49] 2025-11-21 17:21:51,626 | INFO     | mean y: 2281814.9005347593
[2025-11-21 18:27:49] 2025-11-21 17:21:51,627 | INFO     | intersect: -5308836956.756195
[2025-11-21 18:27:49] 2025-11-21 17:21:51,628 | INFO     | chi2: 1.9719293905198105
[2025-11-21 18:27:49] 2025-11-21 17:21:51,628 | INFO     | current chi2=1.9719293905198105 (change=1.4610848501898595 %)
[2025-11-21 18:27:49] 2025-11-21 17:21:51,628 | INFO     | right removable region: 934
[2025-11-21 18:27:49] 2025-11-21 17:21:51,629 | INFO     | sum of square deviations: 257550129002.53107
[2025-11-21 18:27:49] 2025-11-21 17:21:51,648 | INFO     | sum of deviations: 414966611061.17993
[2025-11-21 18:27:49] 2025-11-21 17:21:51,649 | INFO     | mean x: 1763716997.5223405
[2025-11-21 18:27:49] 2025-11-21 17:21:51,649 | INFO     | mean y: 2281605.6819148934
[2025-11-21 18:27:49] 2025-11-21 17:21:51,649 | INFO     | intersect: -2839431843.1420712
[2025-11-21 18:27:49] 2025-11-21 17:21:51,650 | INFO     | chi2: 2.0443688238103053
[2025-11-21 18:27:49] 2025-11-21 17:21:51,650 | INFO     | current chi2=2.0443688238103053 (change=47.959701460335474 %)
[2025-11-21 18:27:49] 2025-11-21 17:21:51,651 | INFO     | sum of square deviations: 253462101762.5284
[2025-11-21 18:27:49] 2025-11-21 17:21:51,670 | INFO     | sum of deviations: 401330537446.6146
[2025-11-21 18:27:49] 2025-11-21 17:21:51,670 | INFO     | mean x: 1763717150.02246
[2025-11-21 18:27:49] 2025-11-21 17:21:51,670 | INFO     | mean y: 2282113.7326203207
[2025-11-21 18:27:49] 2025-11-21 17:21:51,670 | INFO     | intersect: -2790378196.428868
[2025-11-21 18:27:49] 2025-11-21 17:21:51,671 | INFO     | chi2: 2.0411998981292094
[2025-11-21 18:27:49] 2025-11-21 17:21:51,671 | INFO     | current chi2=2.0411998981292094 (change=0.15500753309227125 %)
[2025-11-21 18:27:49] 2025-11-21 17:21:51,671 | INFO     | left removable region: 20
[2025-11-21 18:27:49] 2025-11-21 17:21:51,672 | INFO     | sum of square deviations: 236764608576.01645
[2025-11-21 18:27:49] 2025-11-21 17:21:51,691 | INFO     | sum of deviations: 574510799430.3234
[2025-11-21 18:27:49] 2025-11-21 17:21:51,691 | INFO     | mean x: 1763717119.522976
[2025-11-21 18:27:49] 2025-11-21 17:21:51,691 | INFO     | mean y: 2288817.175054705
[2025-11-21 18:27:49] 2025-11-21 17:21:51,691 | INFO     | intersect: -4277381773.798287
[2025-11-21 18:27:49] 2025-11-21 17:21:51,692 | INFO     | chi2: 0.06559008781857815
[2025-11-21 18:27:49] 2025-11-21 17:21:51,693 | INFO     | current memory leak: 2.43 B/s (using 914 data points, chi2=0.07)
[2025-11-21 18:27:49] 2025-11-21 17:21:51,694 | INFO     | could have reported an average CPU frequency of 2680 MHz (35 samples)
[2025-11-21 18:27:49] 2025-11-21 17:21:51,694 | INFO     | ..............................
[2025-11-21 18:27:49] 2025-11-21 17:21:51,694 | INFO     | . Timing measurements:
[2025-11-21 18:27:49] 2025-11-21 17:21:51,694 | INFO     | . get job = 0 s
[2025-11-21 18:27:49] 2025-11-21 17:21:51,694 | INFO     | . initial setup = 1 s
[2025-11-21 18:27:49] 2025-11-21 17:21:51,694 | INFO     | . payload setup = 9 s
[2025-11-21 18:27:49] 2025-11-21 17:21:51,694 | INFO     | . stage-in = 0 s
[2025-11-21 18:27:49] 2025-11-21 17:21:51,695 | INFO     | . payload execution = 57651 s
[2025-11-21 18:27:49] 2025-11-21 17:21:51,695 | INFO     | . stage-out = 2 s
[2025-11-21 18:27:49] 2025-11-21 17:21:51,695 | INFO     | . log creation = 0 s
[2025-11-21 18:27:49] 2025-11-21 17:21:51,695 | INFO     | ..............................
[2025-11-21 18:27:49] 2025-11-21 17:21:51,785 | INFO     | 
[2025-11-21 18:27:49] 2025-11-21 17:21:51,785 | INFO     | job summary report
[2025-11-21 18:27:49] 2025-11-21 17:21:51,786 | INFO     | --------------------------------------------------
[2025-11-21 18:27:49] 2025-11-21 17:21:51,786 | INFO     | PanDA job id: 6893861590
[2025-11-21 18:27:49] 2025-11-21 17:21:51,786 | INFO     | task id: 47523449
[2025-11-21 18:27:49] 2025-11-21 17:21:51,786 | INFO     | errors: (none)
[2025-11-21 18:27:49] 2025-11-21 17:21:51,786 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 18:27:49] 2025-11-21 17:21:51,786 | INFO     | pilot state: finished 
[2025-11-21 18:27:49] 2025-11-21 17:21:51,786 | INFO     | transexitcode: 0
[2025-11-21 18:27:49] 2025-11-21 17:21:51,786 | INFO     | exeerrorcode: 0
[2025-11-21 18:27:49] 2025-11-21 17:21:51,786 | INFO     | exeerrordiag: 
[2025-11-21 18:27:49] 2025-11-21 17:21:51,786 | INFO     | exitcode: 0
[2025-11-21 18:27:49] 2025-11-21 17:21:51,786 | INFO     | exitmsg: OK
[2025-11-21 18:27:49] 2025-11-21 17:21:51,786 | INFO     | cpuconsumptiontime: 230678 s
[2025-11-21 18:27:49] 2025-11-21 17:21:51,786 | INFO     | nevents: 1000
[2025-11-21 18:27:49] 2025-11-21 17:21:51,787 | INFO     | neventsw: 0
[2025-11-21 18:27:49] 2025-11-21 17:21:51,787 | INFO     | pid: 1016994
[2025-11-21 18:27:49] 2025-11-21 17:21:51,787 | INFO     | pgrp: 1016994
[2025-11-21 18:27:49] 2025-11-21 17:21:51,787 | INFO     | corecount: 4
[2025-11-21 18:27:49] 2025-11-21 17:21:51,787 | INFO     | event service: False
[2025-11-21 18:27:49] 2025-11-21 17:21:51,787 | INFO     | sizes: {0: 2298819, 1: 2298847, 7: 2299109, 11: 2299137, 57665: 2353369, 57667: 2362387, 57668: 2362571, 57676: 2362817}
[2025-11-21 18:27:49] 2025-11-21 17:21:51,787 | INFO     | --------------------------------------------------
[2025-11-21 18:27:49] 2025-11-21 17:21:51,787 | INFO     | 
[2025-11-21 18:27:49] 2025-11-21 17:21:51,787 | INFO     | executing command: ls -lF /scratch/boinc/var/slot100/slots/0
[2025-11-21 18:27:49] 2025-11-21 17:21:51,816 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 18:27:49] 2025-11-21 17:21:51,817 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 18:27:49] 2025-11-21 17:21:51,817 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 18:27:49] 2025-11-21 17:21:51,817 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 18:27:49] 2025-11-21 17:21:51,817 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 18:27:49] 2025-11-21 17:21:51,817 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 18:27:49] 2025-11-21 17:21:51,817 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 18:27:49] 2025-11-21 17:21:51,817 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 18:27:49] 2025-11-21 17:21:51,817 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 18:27:49] 2025-11-21 17:21:51,817 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 18:27:49] 2025-11-21 17:21:51,818 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 18:27:49] 2025-11-21 17:21:51,818 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 18:27:49] 2025-11-21 17:21:51,818 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 18:27:49] 2025-11-21 17:21:51,818 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 18:27:49] 2025-11-21 17:21:51,818 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 18:27:49] 2025-11-21 17:21:51,818 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 18:27:49] 2025-11-21 17:21:51,818 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 18:27:49] 2025-11-21 17:21:51,818 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 18:27:49] 2025-11-21 17:21:51,818 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 18:27:49] 2025-11-21 17:21:51,818 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 18:27:49] 2025-11-21 17:21:51,819 | INFO     | job 6893861590 has completed (purged errors)
[2025-11-21 18:27:49] 2025-11-21 17:21:51,819 | INFO     | overall cleanup function is called
[2025-11-21 18:27:49] 2025-11-21 17:21:52,834 | INFO     | --- collectZombieJob: --- 10, [1016994]
[2025-11-21 18:27:49] 2025-11-21 17:21:52,835 | INFO     | zombie collector waiting for pid 1016994
[2025-11-21 18:27:49] 2025-11-21 17:21:52,835 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 18:27:49] 2025-11-21 17:21:52,835 | INFO     | collected zombie processes
[2025-11-21 18:27:49] 2025-11-21 17:21:52,835 | INFO     | will attempt to kill all subprocesses of pid=1016994
[2025-11-21 18:27:49] 2025-11-21 17:21:53,605 | INFO     | PID=1009684 has CPU usage=29.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-21 18:27:49] 2025-11-21 17:21:53,606 | INFO     | .. there are 8 such processes running
[2025-11-21 18:27:49] 2025-11-21 17:21:54,110 | INFO     | process IDs to be killed: [1016994] (in reverse order)
[2025-11-21 18:27:49] 2025-11-21 17:21:54,391 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 18:27:49] 2025-11-21 17:21:54,392 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 18:27:49] 2025-11-21 17:21:54,422 | INFO     | did not find any defunct processes belonging to 1016994
[2025-11-21 18:27:49] 2025-11-21 17:21:54,450 | INFO     | did not find any defunct processes belonging to 1016994
[2025-11-21 18:27:49] 2025-11-21 17:21:54,451 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 18:27:49] 2025-11-21 17:21:54,451 | INFO     | ready for new job
[2025-11-21 18:27:49] 2025-11-21 17:21:54,451 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 18:27:49] 2025-11-21 17:21:54,457 | INFO     | ***************************************
[2025-11-21 18:27:49] 2025-11-21 17:21:54,457 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 18:27:49] 2025-11-21 17:21:54,457 | INFO     | ***************************************
[2025-11-21 18:27:49] 2025-11-21 17:21:54,457 | INFO     | 
[2025-11-21 18:27:49] 2025-11-21 17:21:54,465 | INFO     | architecture information:
[2025-11-21 18:27:49] 2025-11-21 17:21:54,466 | INFO     | executing command: cat /etc/os-release
[2025-11-21 18:27:49] 2025-11-21 17:21:54,486 | INFO     | cat /etc/os-release:
[2025-11-21 18:27:49] NAME="CentOS Linux"
[2025-11-21 18:27:49] VERSION="7 (Core)"
[2025-11-21 18:27:49] ID="centos"
[2025-11-21 18:27:49] ID_LIKE="rhel fedora"
[2025-11-21 18:27:49] VERSION_ID="7"
[2025-11-21 18:27:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 18:27:49] ANSI_COLOR="0;31"
[2025-11-21 18:27:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 18:27:49] HOME_URL="https://www.centos.org/"
[2025-11-21 18:27:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 18:27:49] 
[2025-11-21 18:27:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 18:27:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 18:27:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 18:27:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 18:27:49] 
[2025-11-21 18:27:49] 2025-11-21 17:21:54,486 | INFO     | ***************************************
[2025-11-21 18:27:49] 2025-11-21 17:21:54,988 | INFO     | executing command: df -mP /scratch/boinc/var/slot100/slots/0
[2025-11-21 18:27:49] 2025-11-21 17:21:55,010 | INFO     | sufficient remaining disk space (3309562757120 B)
[2025-11-21 18:27:49] 2025-11-21 17:21:55,011 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 18:27:49] 2025-11-21 17:21:55,011 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 18:27:49] 2025-11-21 17:21:55,011 | INFO     | update_server=False
[2025-11-21 18:27:49] 2025-11-21 17:21:55,011 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 18:27:49] 2025-11-21 17:21:55,011 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 18:27:49] 2025-11-21 17:21:55,214 | INFO     | all data control threads have been joined
[2025-11-21 18:27:49] 2025-11-21 17:21:55,397 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 18:27:49] 2025-11-21 17:21:55,398 | INFO     | aborting loop
[2025-11-21 18:27:49] 2025-11-21 17:21:56,014 | INFO     | [job] retrieve thread has finished
[2025-11-21 18:27:49] 2025-11-21 17:21:56,118 | INFO     | [payload] validate_post thread has finished
[2025-11-21 18:27:49] 2025-11-21 17:21:56,125 | INFO     | [job] validate thread has finished
[2025-11-21 18:27:49] 2025-11-21 17:21:56,156 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 18:27:49] 2025-11-21 17:21:56,220 | INFO     | [data] control thread has finished
[2025-11-21 18:27:49] 2025-11-21 17:21:56,373 | INFO     | all payload control threads have been joined
[2025-11-21 18:27:49] 2025-11-21 17:21:56,403 | INFO     | [job] job monitor thread has finished
[2025-11-21 18:27:49] 2025-11-21 17:21:56,451 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 18:27:49] 2025-11-21 17:21:56,528 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 18:27:49] 2025-11-21 17:21:56,681 | INFO     | all job control threads have been joined
[2025-11-21 18:27:49] 2025-11-21 17:21:56,700 | INFO     | [data] copytool_in thread has finished
[2025-11-21 18:27:49] 2025-11-21 17:21:56,731 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 18:27:49] 2025-11-21 17:21:56,792 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 18:27:49] 2025-11-21 17:21:56,972 | INFO     | [payload] failed_post thread has finished
[2025-11-21 18:27:49] 2025-11-21 17:21:57,378 | INFO     | [payload] control thread has finished
[2025-11-21 18:27:49] 2025-11-21 17:21:57,687 | INFO     | [job] control thread has finished
[2025-11-21 18:27:49] 2025-11-21 17:21:57,797 | INFO     | [job] queue monitor thread has finished
[2025-11-21 18:27:49] 2025-11-21 17:21:58,161 | INFO     | [data] copytool_out thread has finished
[2025-11-21 18:27:49] 2025-11-21 17:21:59,018 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 18:27:49] 2025-11-21 17:22:05,873 | INFO     | job.realtimelogging is not enabled
[2025-11-21 18:27:49] 2025-11-21 17:22:06,879 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 18:27:49] 2025-11-21 17:22:26,729 | INFO     | PID=1009684 has CPU usage=7.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 18:27:49] 2025-11-21 17:22:26,729 | INFO     | .. there are 8 such processes running
[2025-11-21 18:27:49] 2025-11-21 17:22:26,729 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 18:27:49] 2025-11-21 17:22:26,729 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 18:27:49] 2025-11-21 17:22:26,729 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 18:27:49] 2025-11-21 17:22:53,980 | INFO     | [monitor] cgroup control has ended
[2025-11-21 18:27:49] 2025-11-21 17:22:54,153 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22683032737600)>', '<ExcThread(monitor, started 22682592601856)>']
[2025-11-21 18:27:49] 2025-11-21 17:22:54,869 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 18:27:49] 2025-11-21 17:22:54,870 | INFO     | [monitor] control thread has ended
[2025-11-21 18:27:49] 2025-11-21 17:22:59,178 | INFO     | all workflow threads have been joined
[2025-11-21 18:27:49] 2025-11-21 17:22:59,178 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 18:27:49] 2025-11-21 17:22:59,178 | INFO     | traces error code: 0
[2025-11-21 18:27:49] 2025-11-21 17:22:59,178 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 18:27:49] 2025-11-21 17:22:59,336 [wrapper] ==== pilot stdout END ====
[2025-11-21 18:27:49] 2025-11-21 17:22:59,339 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 18:27:49] 2025-11-21 17:22:59,343 [wrapper] pilotpid: 1009684
[2025-11-21 18:27:49] 2025-11-21 17:22:59,348 [wrapper] Pilot exit status: 0
[2025-11-21 18:27:49] 2025-11-21 17:22:59,361 [wrapper] pandaids: 6893861590
[2025-11-21 18:27:49] 2025-11-21 17:22:59,550 [wrapper] cleanup supervisor_pilot 2663872 1009685
[2025-11-21 18:27:49] 2025-11-21 17:22:59,555 [wrapper] Test setup, not cleaning
[2025-11-21 18:27:49] 2025-11-21 17:22:59,559 [wrapper] apfmon messages muted
[2025-11-21 18:27:49] 2025-11-21 17:22:59,563 [wrapper] ==== wrapper stdout END ====
[2025-11-21 18:27:49] 2025-11-21 17:22:59,566 [wrapper] ==== wrapper stderr END ====
[2025-11-21 18:27:49]  *** Error codes and diagnostics ***
[2025-11-21 18:27:49]     "exeErrorCode": 0,
[2025-11-21 18:27:49]     "exeErrorDiag": "",
[2025-11-21 18:27:49]     "pilotErrorCode": 0,
[2025-11-21 18:27:49]     "pilotErrorDiag": "",
[2025-11-21 18:27:49]  *** Listing of results directory ***
[2025-11-21 18:27:49] total 1309316
[2025-11-21 18:27:49] -rw-r--r-- 1 boinc boinc    576529 Nov 20 14:50 pilot3.tar.gz
[2025-11-21 18:27:49] -rw-r--r-- 1 boinc boinc      5112 Nov 20 15:04 queuedata.json
[2025-11-21 18:27:49] -rwx------ 1 boinc boinc     36292 Nov 20 15:04 runpilot2-wrapper.sh
[2025-11-21 18:27:49] -rw-r--r-- 1 boinc boinc       100 Nov 21 00:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 18:27:49] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 00:39 run_atlas
[2025-11-21 18:27:49] -rw-r--r-- 1 boinc boinc       105 Nov 21 00:39 job.xml
[2025-11-21 18:27:49] -rw-r--r-- 2 boinc boinc 409799959 Nov 21 02:20 EVNT.47493127._000577.pool.root.1
[2025-11-21 18:27:49] -rw-r--r-- 1 boinc boinc      6686 Nov 21 02:20 init_data.xml
[2025-11-21 18:27:49] -rw-r--r-- 2 boinc boinc     15847 Nov 21 02:20 start_atlas.sh
[2025-11-21 18:27:49] drwxrwx--x 2 boinc boinc      4096 Nov 21 02:20 shared
[2025-11-21 18:27:49] -rw-r--r-- 2 boinc boinc    590104 Nov 21 02:20 input.tar.gz
[2025-11-21 18:27:49] -rw-r--r-- 1 boinc boinc         0 Nov 21 02:20 boinc_lockfile
[2025-11-21 18:27:49] -rw-r--r-- 1 boinc boinc      2786 Nov 21 02:20 pandaJob.out
[2025-11-21 18:27:49] -rw------- 1 boinc boinc    989817 Nov 21 02:20 agis_schedconf.cvmfs.json
[2025-11-21 18:27:49] drwx------ 5 boinc boinc      4096 Nov 21 02:20 pilot3
[2025-11-21 18:27:49] -rw-r--r-- 1 boinc boinc       532 Nov 21 18:15 boinc_task_state.xml
[2025-11-21 18:27:49] -rw------- 1 boinc boinc 907844864 Nov 21 18:21 HITS.47523449._005764.pool.root.1
[2025-11-21 18:27:49] -rw------- 1 boinc boinc      1039 Nov 21 18:21 memory_monitor_summary.json
[2025-11-21 18:27:49] -rw------- 1 boinc boinc   1526164 Nov 21 18:21 agis_ddmendpoints.agis.ALL.json
[2025-11-21 18:27:49] -rw------- 1 boinc boinc   1683615 Nov 21 18:21 log.47523449._005764.job.log.tgz.1
[2025-11-21 18:27:49] -rw------- 1 boinc boinc        95 Nov 21 18:21 pilot_heartbeat.json
[2025-11-21 18:27:49] -rw------- 1 boinc boinc      8605 Nov 21 18:21 heartbeat.json
[2025-11-21 18:27:49] -rw------- 1 boinc boinc      4907 Nov 21 18:22 pilotlog.txt
[2025-11-21 18:27:49] -rw------- 1 boinc boinc   7903107 Nov 21 18:22 log.47523449._005764.job.log.1
[2025-11-21 18:27:49] -rw------- 1 boinc boinc       353 Nov 21 18:22 output.list
[2025-11-21 18:27:49] -rw-r--r-- 1 boinc boinc       620 Nov 21 18:22 runtime_log
[2025-11-21 18:27:49] -rw------- 1 boinc boinc   9605120 Nov 21 18:22 result.tar.gz
[2025-11-21 18:27:49] -rw-r--r-- 1 boinc boinc      9223 Nov 21 18:22 runtime_log.err
[2025-11-21 18:27:49] -rw------- 1 boinc boinc       671 Nov 21 18:22 J93LDmNSKg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm2lGKDmq1rFPo.diag
[2025-11-21 18:27:49] -rw-r--r-- 1 boinc boinc        28 Nov 21 18:27 wrapper_checkpoint.txt
[2025-11-21 18:27:49] -rw-r--r-- 1 boinc boinc      8192 Nov 21 18:27 boinc_mmap_file
[2025-11-21 18:27:49] -rw-r--r-- 1 boinc boinc     21163 Nov 21 18:27 stderr.txt
[2025-11-21 18:27:49] HITS file was successfully produced:
[2025-11-21 18:27:49] -rw------- 1 boinc boinc 907844864 Nov 21 18:21 shared/HITS.pool.root.1
[2025-11-21 18:27:49]  *** Contents of shared directory: ***
[2025-11-21 18:27:49] total 1296748
[2025-11-21 18:27:49] -rw-r--r-- 2 boinc boinc 409799959 Nov 21 02:20 ATLAS.root_0
[2025-11-21 18:27:49] -rw-r--r-- 2 boinc boinc     15847 Nov 21 02:20 start_atlas.sh
[2025-11-21 18:27:49] -rw-r--r-- 2 boinc boinc    590104 Nov 21 02:20 input.tar.gz
[2025-11-21 18:27:49] -rw------- 1 boinc boinc 907844864 Nov 21 18:21 HITS.pool.root.1
[2025-11-21 18:27:49] -rw------- 1 boinc boinc   9605120 Nov 21 18:22 result.tar.gz
18:27:50 (1005172): run_atlas exited; CPU time 233674.756052
18:27:50 (1005172): called boinc_finish(0)

</stderr_txt>
]]>

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