Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:14:14 (3098836): wrapper (7.7.26015): starting
18:14:14 (3098836): wrapper: running run_atlas (--nthreads 4)
[2025-11-23 18:14:14] Arguments: --nthreads 4
[2025-11-23 18:14:14] Threads: 4
[2025-11-23 18:14:14] Checking for CVMFS
[2025-11-23 18:14:14] No cvmfs_config command found, will try listing directly
[2025-11-23 18:14:14] CVMFS is ok
[2025-11-23 18:14:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 18:14:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 18:14:14] Further information can be found at the LHC@home message board.
[2025-11-23 18:14:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 18:14:14] Checking for apptainer binary...
[2025-11-23 18:14:14] which: no apptainer in ((null))
[2025-11-23 18:14:14] apptainer is not installed, using version from CVMFS
[2025-11-23 18:14:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 18:14:14] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot108/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2025-11-23 18:14:14] apptainer works
[2025-11-23 18:14:14] Set ATHENA_PROC_NUMBER=4
[2025-11-23 18:14:14] Set ATHENA_CORE_NUMBER=4
[2025-11-23 18:14:14] Starting ATLAS job with PandaID=6893850774
[2025-11-23 18:14:14] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot108/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 10:56:06]  *** The last 200 lines of the pilot log: ***
[2025-11-24 10:56:06] 2025-11-24 09:49:34,165 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 10:56:06] 2025-11-24 09:49:35,213 | INFO     | time since job start (59705s) is within the limit (172800.0s)
[2025-11-24 10:56:06] 2025-11-24 09:49:35,355 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 10:56:06] 2025-11-24 09:49:35,377 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2730.359156250002
[2025-11-24 10:56:06] 2025-11-24 09:49:35,403 | INFO     | using path: /scratch/boinc/var/slot108/slots/0/PanDA_Pilot-6893850774/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 10:56:06] 2025-11-24 09:49:35,404 | INFO     | extracted standard info from prmon json
[2025-11-24 10:56:06] 2025-11-24 09:49:35,404 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 10:56:06] 2025-11-24 09:49:35,404 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 10:56:06] 2025-11-24 09:49:35,421 | INFO     | fitting pss+swap vs Time
[2025-11-24 10:56:06] 2025-11-24 09:49:35,423 | INFO     | sum of square deviations: 290064668191.69806
[2025-11-24 10:56:06] 2025-11-24 09:49:35,449 | INFO     | sum of deviations: 668467602766.7153
[2025-11-24 10:56:06] 2025-11-24 09:49:35,450 | INFO     | mean x: 1763947903.5286298
[2025-11-24 10:56:06] 2025-11-24 09:49:35,450 | INFO     | mean y: 2274161.474437628
[2025-11-24 10:56:06] 2025-11-24 09:49:35,450 | INFO     | intersect: -4062826334.315296
[2025-11-24 10:56:06] 2025-11-24 09:49:35,451 | INFO     | chi2: 3.864557248922472
[2025-11-24 10:56:06] 2025-11-24 09:49:35,452 | INFO     | sum of square deviations: 285638537929.19415
[2025-11-24 10:56:06] 2025-11-24 09:49:35,477 | INFO     | sum of deviations: 859642002245.6547
[2025-11-24 10:56:06] 2025-11-24 09:49:35,477 | INFO     | mean x: 1763947751.028777
[2025-11-24 10:56:06] 2025-11-24 09:49:35,477 | INFO     | mean y: 2280743.2980472767
[2025-11-24 10:56:06] 2025-11-24 09:49:35,477 | INFO     | intersect: -5306399197.24619
[2025-11-24 10:56:06] 2025-11-24 09:49:35,478 | INFO     | chi2: 1.9696944292180274
[2025-11-24 10:56:06] 2025-11-24 09:49:35,478 | INFO     | current chi2=1.9696944292180274 (change=49.03182169788728 %)
[2025-11-24 10:56:06] 2025-11-24 09:49:35,480 | INFO     | sum of square deviations: 281257664329.19
[2025-11-24 10:56:06] 2025-11-24 09:49:35,501 | INFO     | sum of deviations: 851455902143.6041
[2025-11-24 10:56:06] 2025-11-24 09:49:35,501 | INFO     | mean x: 1763947598.5289257
[2025-11-24 10:56:06] 2025-11-24 09:49:35,501 | INFO     | mean y: 2280457.5320247933
[2025-11-24 10:56:06] 2025-11-24 09:49:35,501 | INFO     | intersect: -5337746799.757601
[2025-11-24 10:56:06] 2025-11-24 09:49:35,502 | INFO     | chi2: 1.9643522735283807
[2025-11-24 10:56:06] 2025-11-24 09:49:35,502 | INFO     | current chi2=1.9643522735283807 (change=0.271217484824158 %)
[2025-11-24 10:56:06] 2025-11-24 09:49:35,502 | INFO     | right removable region: 967
[2025-11-24 10:56:06] 2025-11-24 09:49:35,503 | INFO     | sum of square deviations: 285638520849.19415
[2025-11-24 10:56:06] 2025-11-24 09:49:35,525 | INFO     | sum of deviations: 490842365712.60565
[2025-11-24 10:56:06] 2025-11-24 09:49:35,525 | INFO     | mean x: 1763948056.028777
[2025-11-24 10:56:06] 2025-11-24 09:49:35,525 | INFO     | mean y: 2280270.264131552
[2025-11-24 10:56:06] 2025-11-24 09:49:35,525 | INFO     | intersect: -3028895056.653472
[2025-11-24 10:56:06] 2025-11-24 09:49:35,526 | INFO     | chi2: 1.96604440712373
[2025-11-24 10:56:06] 2025-11-24 09:49:35,527 | INFO     | current chi2=1.96604440712373 (change=49.12627034644373 %)
[2025-11-24 10:56:06] 2025-11-24 09:49:35,528 | INFO     | sum of square deviations: 281257630169.18994
[2025-11-24 10:56:06] 2025-11-24 09:49:35,549 | INFO     | sum of deviations: 479516040516.81805
[2025-11-24 10:56:06] 2025-11-24 09:49:35,549 | INFO     | mean x: 1763948208.5289257
[2025-11-24 10:56:06] 2025-11-24 09:49:35,550 | INFO     | mean y: 2280663.9886363638
[2025-11-24 10:56:06] 2025-11-24 09:49:35,550 | INFO     | intersect: -3005074052.4743824
[2025-11-24 10:56:06] 2025-11-24 09:49:35,551 | INFO     | chi2: 1.9644304874143668
[2025-11-24 10:56:06] 2025-11-24 09:49:35,551 | INFO     | current chi2=1.9644304874143668 (change=0.08208968747172499 %)
[2025-11-24 10:56:06] 2025-11-24 09:49:35,551 | INFO     | left removable region: 20
[2025-11-24 10:56:06] 2025-11-24 09:49:35,552 | INFO     | sum of square deviations: 263346881173.17227
[2025-11-24 10:56:06] 2025-11-24 09:49:35,572 | INFO     | sum of deviations: 656937823377.5934
[2025-11-24 10:56:06] 2025-11-24 09:49:35,573 | INFO     | mean x: 1763948178.029567
[2025-11-24 10:56:06] 2025-11-24 09:49:35,573 | INFO     | mean y: 2287117.157338965
[2025-11-24 10:56:06] 2025-11-24 09:49:35,573 | INFO     | intersect: -4398009068.099573
[2025-11-24 10:56:06] 2025-11-24 09:49:35,574 | INFO     | chi2: 0.04514486181835419
[2025-11-24 10:56:06] 2025-11-24 09:49:35,574 | INFO     | current memory leak: 2.49 B/s (using 947 data points, chi2=0.05)
[2025-11-24 10:56:06] 2025-11-24 09:49:35,576 | INFO     | could have reported an average CPU frequency of 2678 MHz (36 samples)
[2025-11-24 10:56:06] 2025-11-24 09:49:35,577 | INFO     | ..............................
[2025-11-24 10:56:06] 2025-11-24 09:49:35,577 | INFO     | . Timing measurements:
[2025-11-24 10:56:06] 2025-11-24 09:49:35,577 | INFO     | . get job = 0 s
[2025-11-24 10:56:06] 2025-11-24 09:49:35,577 | INFO     | . initial setup = 1 s
[2025-11-24 10:56:06] 2025-11-24 09:49:35,577 | INFO     | . payload setup = 9 s
[2025-11-24 10:56:06] 2025-11-24 09:49:35,577 | INFO     | . stage-in = 0 s
[2025-11-24 10:56:06] 2025-11-24 09:49:35,577 | INFO     | . payload execution = 59659 s
[2025-11-24 10:56:06] 2025-11-24 09:49:35,577 | INFO     | . stage-out = 2 s
[2025-11-24 10:56:06] 2025-11-24 09:49:35,577 | INFO     | . log creation = 0 s
[2025-11-24 10:56:06] 2025-11-24 09:49:35,577 | INFO     | ..............................
[2025-11-24 10:56:06] 2025-11-24 09:49:35,675 | INFO     | 
[2025-11-24 10:56:06] 2025-11-24 09:49:35,675 | INFO     | job summary report
[2025-11-24 10:56:06] 2025-11-24 09:49:35,675 | INFO     | --------------------------------------------------
[2025-11-24 10:56:06] 2025-11-24 09:49:35,675 | INFO     | PanDA job id: 6893850774
[2025-11-24 10:56:06] 2025-11-24 09:49:35,675 | INFO     | task id: 47523449
[2025-11-24 10:56:06] 2025-11-24 09:49:35,675 | INFO     | errors: (none)
[2025-11-24 10:56:06] 2025-11-24 09:49:35,675 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 10:56:06] 2025-11-24 09:49:35,675 | INFO     | pilot state: finished 
[2025-11-24 10:56:06] 2025-11-24 09:49:35,675 | INFO     | transexitcode: 0
[2025-11-24 10:56:06] 2025-11-24 09:49:35,676 | INFO     | exeerrorcode: 0
[2025-11-24 10:56:06] 2025-11-24 09:49:35,676 | INFO     | exeerrordiag: 
[2025-11-24 10:56:06] 2025-11-24 09:49:35,676 | INFO     | exitcode: 0
[2025-11-24 10:56:06] 2025-11-24 09:49:35,676 | INFO     | exitmsg: OK
[2025-11-24 10:56:06] 2025-11-24 09:49:35,676 | INFO     | cpuconsumptiontime: 236940 s
[2025-11-24 10:56:06] 2025-11-24 09:49:35,676 | INFO     | nevents: 1000
[2025-11-24 10:56:06] 2025-11-24 09:49:35,676 | INFO     | neventsw: 0
[2025-11-24 10:56:06] 2025-11-24 09:49:35,676 | INFO     | pid: 3110196
[2025-11-24 10:56:06] 2025-11-24 09:49:35,676 | INFO     | pgrp: 3110196
[2025-11-24 10:56:06] 2025-11-24 09:49:35,676 | INFO     | corecount: 4
[2025-11-24 10:56:06] 2025-11-24 09:49:35,676 | INFO     | event service: False
[2025-11-24 10:56:06] 2025-11-24 09:49:35,676 | INFO     | sizes: {0: 2298647, 1: 2298846, 8: 2299108, 12: 2299136, 59673: 2354036, 59676: 2363054, 59678: 2363238, 59688: 2363484}
[2025-11-24 10:56:06] 2025-11-24 09:49:35,676 | INFO     | --------------------------------------------------
[2025-11-24 10:56:06] 2025-11-24 09:49:35,677 | INFO     | 
[2025-11-24 10:56:06] 2025-11-24 09:49:35,677 | INFO     | executing command: ls -lF /scratch/boinc/var/slot108/slots/0
[2025-11-24 10:56:06] 2025-11-24 09:49:35,705 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 10:56:06] 2025-11-24 09:49:35,705 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 10:56:06] 2025-11-24 09:49:35,706 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 10:56:06] 2025-11-24 09:49:35,706 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 10:56:06] 2025-11-24 09:49:35,706 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 10:56:06] 2025-11-24 09:49:35,706 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 10:56:06] 2025-11-24 09:49:35,706 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 10:56:06] 2025-11-24 09:49:35,706 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 10:56:06] 2025-11-24 09:49:35,706 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 10:56:06] 2025-11-24 09:49:35,706 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 10:56:06] 2025-11-24 09:49:35,706 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 10:56:06] 2025-11-24 09:49:35,706 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 10:56:06] 2025-11-24 09:49:35,707 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 10:56:06] 2025-11-24 09:49:35,707 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 10:56:06] 2025-11-24 09:49:35,707 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 10:56:06] 2025-11-24 09:49:35,707 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 10:56:06] 2025-11-24 09:49:35,707 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 10:56:06] 2025-11-24 09:49:35,707 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 10:56:06] 2025-11-24 09:49:35,707 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 10:56:06] 2025-11-24 09:49:35,707 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 10:56:06] 2025-11-24 09:49:35,707 | INFO     | job 6893850774 has completed (purged errors)
[2025-11-24 10:56:06] 2025-11-24 09:49:35,708 | INFO     | overall cleanup function is called
[2025-11-24 10:56:06] 2025-11-24 09:49:36,725 | INFO     | --- collectZombieJob: --- 10, [3110196]
[2025-11-24 10:56:06] 2025-11-24 09:49:36,725 | INFO     | zombie collector waiting for pid 3110196
[2025-11-24 10:56:06] 2025-11-24 09:49:36,725 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 10:56:06] 2025-11-24 09:49:36,725 | INFO     | collected zombie processes
[2025-11-24 10:56:06] 2025-11-24 09:49:36,725 | INFO     | will attempt to kill all subprocesses of pid=3110196
[2025-11-24 10:56:06] 2025-11-24 09:49:37,604 | INFO     | process IDs to be killed: [3110196] (in reverse order)
[2025-11-24 10:56:06] 2025-11-24 09:49:37,900 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 10:56:06] 2025-11-24 09:49:37,900 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 10:56:06] 2025-11-24 09:49:37,935 | INFO     | did not find any defunct processes belonging to 3110196
[2025-11-24 10:56:06] 2025-11-24 09:49:37,969 | INFO     | did not find any defunct processes belonging to 3110196
[2025-11-24 10:56:06] 2025-11-24 09:49:37,971 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 10:56:06] 2025-11-24 09:49:37,971 | INFO     | ready for new job
[2025-11-24 10:56:06] 2025-11-24 09:49:37,972 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 10:56:06] 2025-11-24 09:49:37,978 | INFO     | ***************************************
[2025-11-24 10:56:06] 2025-11-24 09:49:37,978 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 10:56:06] 2025-11-24 09:49:37,979 | INFO     | ***************************************
[2025-11-24 10:56:06] 2025-11-24 09:49:37,979 | INFO     | 
[2025-11-24 10:56:06] 2025-11-24 09:49:37,987 | INFO     | architecture information:
[2025-11-24 10:56:06] 2025-11-24 09:49:37,988 | INFO     | executing command: cat /etc/os-release
[2025-11-24 10:56:06] 2025-11-24 09:49:38,014 | INFO     | cat /etc/os-release:
[2025-11-24 10:56:06] NAME="CentOS Linux"
[2025-11-24 10:56:06] VERSION="7 (Core)"
[2025-11-24 10:56:06] ID="centos"
[2025-11-24 10:56:06] ID_LIKE="rhel fedora"
[2025-11-24 10:56:06] VERSION_ID="7"
[2025-11-24 10:56:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 10:56:06] ANSI_COLOR="0;31"
[2025-11-24 10:56:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 10:56:06] HOME_URL="https://www.centos.org/"
[2025-11-24 10:56:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 10:56:06] 
[2025-11-24 10:56:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 10:56:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 10:56:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 10:56:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 10:56:06] 
[2025-11-24 10:56:06] 2025-11-24 09:49:38,015 | INFO     | ***************************************
[2025-11-24 10:56:06] 2025-11-24 09:49:38,518 | INFO     | executing command: df -mP /scratch/boinc/var/slot108/slots/0
[2025-11-24 10:56:06] 2025-11-24 09:49:38,542 | INFO     | sufficient remaining disk space (3287834165248 B)
[2025-11-24 10:56:06] 2025-11-24 09:49:38,542 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 10:56:06] 2025-11-24 09:49:38,542 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 10:56:06] 2025-11-24 09:49:38,542 | INFO     | update_server=False
[2025-11-24 10:56:06] 2025-11-24 09:49:38,542 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 10:56:06] 2025-11-24 09:49:38,543 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 10:56:06] 2025-11-24 09:49:38,543 | INFO     | aborting loop
[2025-11-24 10:56:06] 2025-11-24 09:49:38,557 | INFO     | all data control threads have been joined
[2025-11-24 10:56:06] 2025-11-24 09:49:39,151 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 10:56:06] 2025-11-24 09:49:39,548 | INFO     | [job] retrieve thread has finished
[2025-11-24 10:56:06] 2025-11-24 09:49:39,549 | INFO     | [job] job monitor thread has finished
[2025-11-24 10:56:06] 2025-11-24 09:49:39,563 | INFO     | [data] control thread has finished
[2025-11-24 10:56:06] 2025-11-24 09:49:39,616 | INFO     | [data] copytool_in thread has finished
[2025-11-24 10:56:06] 2025-11-24 09:49:39,754 | INFO     | all payload control threads have been joined
[2025-11-24 10:56:06] 2025-11-24 09:49:39,771 | INFO     | all job control threads have been joined
[2025-11-24 10:56:06] 2025-11-24 09:49:39,783 | INFO     | [payload] validate_post thread has finished
[2025-11-24 10:56:06] 2025-11-24 09:49:39,864 | INFO     | [payload] failed_post thread has finished
[2025-11-24 10:56:06] 2025-11-24 09:49:40,089 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 10:56:06] 2025-11-24 09:49:40,282 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 10:56:06] 2025-11-24 09:49:40,478 | INFO     | [job] validate thread has finished
[2025-11-24 10:56:06] 2025-11-24 09:49:40,685 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 10:56:06] 2025-11-24 09:49:40,759 | INFO     | [payload] control thread has finished
[2025-11-24 10:56:06] 2025-11-24 09:49:40,777 | INFO     | [job] control thread has finished
[2025-11-24 10:56:06] 2025-11-24 09:49:40,896 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 10:56:06] 2025-11-24 09:49:41,114 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 10:56:06] 2025-11-24 09:49:41,156 | INFO     | [data] copytool_out thread has finished
[2025-11-24 10:56:06] 2025-11-24 09:49:41,691 | INFO     | [job] queue monitor thread has finished
[2025-11-24 10:56:06] 2025-11-24 09:49:45,120 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 10:56:06] 2025-11-24 09:49:49,371 | INFO     | job.realtimelogging is not enabled
[2025-11-24 10:56:06] 2025-11-24 09:49:50,376 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 10:56:06] 2025-11-24 09:50:09,175 | INFO     | PID=3102822 has CPU usage=12.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-24 10:56:06] 2025-11-24 09:50:09,175 | INFO     | .. there are 10 such processes running
[2025-11-24 10:56:06] 2025-11-24 09:50:09,176 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 10:56:06] 2025-11-24 09:50:09,176 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 10:56:06] 2025-11-24 09:50:09,176 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 10:56:06] 2025-11-24 09:50:09,218 | INFO     | [monitor] cgroup control has ended
[2025-11-24 10:56:06] 2025-11-24 09:50:09,587 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23176984561472)>', '<ExcThread(monitor, started 23176746600192)>']
[2025-11-24 10:56:06] 2025-11-24 09:50:10,181 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 10:56:06] 2025-11-24 09:50:10,182 | INFO     | [monitor] control thread has ended
[2025-11-24 10:56:06] 2025-11-24 09:50:14,613 | INFO     | all workflow threads have been joined
[2025-11-24 10:56:06] 2025-11-24 09:50:14,613 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 10:56:06] 2025-11-24 09:50:14,613 | INFO     | traces error code: 0
[2025-11-24 10:56:06] 2025-11-24 09:50:14,613 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 10:56:06] 2025-11-24 09:50:14,760 [wrapper] ==== pilot stdout END ====
[2025-11-24 10:56:06] 2025-11-24 09:50:14,764 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 10:56:06] 2025-11-24 09:50:14,768 [wrapper] pilotpid: 3102822
[2025-11-24 10:56:06] 2025-11-24 09:50:14,772 [wrapper] Pilot exit status: 0
[2025-11-24 10:56:06] 2025-11-24 09:50:14,786 [wrapper] pandaids: 6893850774
[2025-11-24 10:56:06] 2025-11-24 09:50:14,972 [wrapper] cleanup supervisor_pilot  653712 3102823
[2025-11-24 10:56:06] 2025-11-24 09:50:14,977 [wrapper] Test setup, not cleaning
[2025-11-24 10:56:06] 2025-11-24 09:50:14,981 [wrapper] apfmon messages muted
[2025-11-24 10:56:06] 2025-11-24 09:50:14,985 [wrapper] ==== wrapper stdout END ====
[2025-11-24 10:56:06] 2025-11-24 09:50:14,988 [wrapper] ==== wrapper stderr END ====
[2025-11-24 10:56:06]  *** Error codes and diagnostics ***
[2025-11-24 10:56:06]     "exeErrorCode": 0,
[2025-11-24 10:56:06]     "exeErrorDiag": "",
[2025-11-24 10:56:06]     "pilotErrorCode": 0,
[2025-11-24 10:56:06]     "pilotErrorDiag": "",
[2025-11-24 10:56:06]  *** Listing of results directory ***
[2025-11-24 10:56:06] total 1311100
[2025-11-24 10:56:06] -rw-r--r-- 1 boinc boinc    576529 Nov 20 12:09 pilot3.tar.gz
[2025-11-24 10:56:06] -rw-r--r-- 1 boinc boinc      5112 Nov 20 12:23 queuedata.json
[2025-11-24 10:56:06] -rwx------ 1 boinc boinc     36292 Nov 20 12:25 runpilot2-wrapper.sh
[2025-11-24 10:56:06] -rw-r--r-- 1 boinc boinc       100 Nov 23 18:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 10:56:06] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 18:14 run_atlas
[2025-11-24 10:56:06] -rw-r--r-- 1 boinc boinc       105 Nov 23 18:14 job.xml
[2025-11-24 10:56:06] -rw-r--r-- 1 boinc boinc      6687 Nov 23 18:14 init_data.xml
[2025-11-24 10:56:06] -rw-r--r-- 2 boinc boinc 407708447 Nov 23 18:14 EVNT.47493127._000340.pool.root.1
[2025-11-24 10:56:06] -rw-r--r-- 2 boinc boinc     15847 Nov 23 18:14 start_atlas.sh
[2025-11-24 10:56:06] drwxrwx--x 2 boinc boinc      4096 Nov 23 18:14 shared
[2025-11-24 10:56:06] -rw-r--r-- 2 boinc boinc    590102 Nov 23 18:14 input.tar.gz
[2025-11-24 10:56:06] -rw-r--r-- 1 boinc boinc         0 Nov 23 18:14 boinc_lockfile
[2025-11-24 10:56:06] -rw-r--r-- 1 boinc boinc      2785 Nov 23 18:14 pandaJob.out
[2025-11-24 10:56:06] -rw------- 1 boinc boinc    989786 Nov 23 18:14 agis_schedconf.cvmfs.json
[2025-11-24 10:56:06] drwx------ 5 boinc boinc      4096 Nov 23 18:14 pilot3
[2025-11-24 10:56:06] -rw-r--r-- 1 boinc boinc       532 Nov 24 10:43 boinc_task_state.xml
[2025-11-24 10:56:06] -rw------- 1 boinc boinc 911226972 Nov 24 10:48 HITS.47523449._003399.pool.root.1
[2025-11-24 10:56:06] -rw------- 1 boinc boinc      1039 Nov 24 10:49 memory_monitor_summary.json
[2025-11-24 10:56:06] -rw------- 1 boinc boinc   1526164 Nov 24 10:49 agis_ddmendpoints.agis.ALL.json
[2025-11-24 10:56:06] -rw------- 1 boinc boinc   1706616 Nov 24 10:49 log.47523449._003399.job.log.tgz.1
[2025-11-24 10:56:06] -rw------- 1 boinc boinc      8595 Nov 24 10:49 heartbeat.json
[2025-11-24 10:56:06] -rw------- 1 boinc boinc        95 Nov 24 10:50 pilot_heartbeat.json
[2025-11-24 10:56:06] -rw------- 1 boinc boinc      4909 Nov 24 10:50 pilotlog.txt
[2025-11-24 10:56:06] -rw------- 1 boinc boinc   8148292 Nov 24 10:50 log.47523449._003399.job.log.1
[2025-11-24 10:56:06] -rw------- 1 boinc boinc       353 Nov 24 10:50 output.list
[2025-11-24 10:56:06] -rw-r--r-- 1 boinc boinc       620 Nov 24 10:50 runtime_log
[2025-11-24 10:56:06] -rw------- 1 boinc boinc   9871360 Nov 24 10:50 result.tar.gz
[2025-11-24 10:56:06] -rw-r--r-- 1 boinc boinc      9223 Nov 24 10:50 runtime_log.err
[2025-11-24 10:56:06] -rw------- 1 boinc boinc       671 Nov 24 10:50 2KyLDmWyHg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIdHKDms2h4Hm.diag
[2025-11-24 10:56:06] -rw-r--r-- 1 boinc boinc        28 Nov 24 10:56 wrapper_checkpoint.txt
[2025-11-24 10:56:06] -rw-r--r-- 1 boinc boinc      8192 Nov 24 10:56 boinc_mmap_file
[2025-11-24 10:56:06] -rw-r--r-- 1 boinc boinc     21101 Nov 24 10:56 stderr.txt
[2025-11-24 10:56:06] HITS file was successfully produced:
[2025-11-24 10:56:06] -rw------- 1 boinc boinc 911226972 Nov 24 10:48 shared/HITS.pool.root.1
[2025-11-24 10:56:06]  *** Contents of shared directory: ***
[2025-11-24 10:56:06] total 1298272
[2025-11-24 10:56:06] -rw-r--r-- 2 boinc boinc 407708447 Nov 23 18:14 ATLAS.root_0
[2025-11-24 10:56:06] -rw-r--r-- 2 boinc boinc     15847 Nov 23 18:14 start_atlas.sh
[2025-11-24 10:56:06] -rw-r--r-- 2 boinc boinc    590102 Nov 23 18:14 input.tar.gz
[2025-11-24 10:56:06] -rw------- 1 boinc boinc 911226972 Nov 24 10:48 HITS.pool.root.1
[2025-11-24 10:56:06] -rw------- 1 boinc boinc   9871360 Nov 24 10:50 result.tar.gz
10:56:07 (3098836): run_atlas exited; CPU time 240177.765780
10:56:07 (3098836): called boinc_finish(0)

</stderr_txt>
]]>

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