Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
17:51:20 (2063580): wrapper (7.7.26015): starting
17:51:20 (2063580): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 17:51:20] Arguments: --nthreads 12
[2025-11-24 17:51:20] Threads: 12
[2025-11-24 17:51:20] Checking for CVMFS
[2025-11-24 17:51:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 17:51:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 17:51:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 17:51:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 17:51:22] 2.13.0.0 2291514 8414 166048 153254 2 81 2161843 4096001 17324 130560 0 49964647 99.984 958380 608 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2025-11-24 17:51:22] CVMFS is ok
[2025-11-24 17:51:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 17:51:22] Checking for apptainer binary...
[2025-11-24 17:51:22] apptainer is not installed, using version from CVMFS
[2025-11-24 17:51:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 17:51:55] epyc7v12
[2025-11-24 17:51:55] apptainer works
[2025-11-24 17:51:55] Set ATHENA_PROC_NUMBER=12
[2025-11-24 17:51:55] Set ATHENA_CORE_NUMBER=12
[2025-11-24 17:51:55] Starting ATLAS job with PandaID=6890966959
[2025-11-24 17:51:55] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 06:09:36]  *** The last 200 lines of the pilot log: ***
[2025-11-25 06:09:36] 2025-11-25 06:08:18,635 | INFO     | 43876s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-25 06:09:36] 2025-11-25 06:08:19,363 | INFO     | monitor loop #2680: job 0:6890966959 is in state 'finished'
[2025-11-25 06:09:36] 2025-11-25 06:08:19,363 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 06:09:36] 2025-11-25 06:08:20,643 | INFO     | time since job start (43866s) is within the limit (172800.0s)
[2025-11-25 06:09:36] 2025-11-25 06:08:21,871 | INFO     | monitor loop #2681: job 0:6890966959 is in state 'finished'
[2025-11-25 06:09:36] 2025-11-25 06:08:21,871 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 06:09:36] 2025-11-25 06:08:22,651 | INFO     | time since job start (43868s) is within the limit (172800.0s)
[2025-11-25 06:09:36] 2025-11-25 06:08:24,381 | INFO     | monitor loop #2682: job 0:6890966959 is in state 'finished'
[2025-11-25 06:09:36] 2025-11-25 06:08:24,382 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 06:09:36] 2025-11-25 06:08:24,663 | INFO     | time since job start (43870s) is within the limit (172800.0s)
[2025-11-25 06:09:36] 2025-11-25 06:08:26,887 | INFO     | monitor loop #2683: job 0:6890966959 is in state 'finished'
[2025-11-25 06:09:36] 2025-11-25 06:08:26,887 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 06:09:36] 2025-11-25 06:08:27,261 | INFO     | PID=2088967 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 06:09:36] 2025-11-25 06:08:27,261 | INFO     | .. there are 19 such processes running
[2025-11-25 06:09:36] 2025-11-25 06:08:28,231 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 06:09:36] 2025-11-25 06:08:28,263 | INFO     | time since job start (43874s) is within the limit (172800.0s)
[2025-11-25 06:09:36] 2025-11-25 06:08:28,286 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2394.9165703125013
[2025-11-25 06:09:36] 2025-11-25 06:08:28,371 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/3/PanDA_Pilot-6890966959/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 06:09:36] 2025-11-25 06:08:28,372 | INFO     | extracted standard info from prmon json
[2025-11-25 06:09:36] 2025-11-25 06:08:28,372 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 06:09:36] 2025-11-25 06:08:28,372 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 06:09:36] 2025-11-25 06:08:28,398 | INFO     | fitting pss+swap vs Time
[2025-11-25 06:09:36] 2025-11-25 06:08:28,403 | INFO     | sum of square deviations: 109117806959.08223
[2025-11-25 06:09:36] 2025-11-25 06:08:28,428 | INFO     | sum of deviations: 223958202106.38577
[2025-11-25 06:09:36] 2025-11-25 06:08:28,428 | INFO     | mean x: 1764029228.2577903
[2025-11-25 06:09:36] 2025-11-25 06:08:28,429 | INFO     | mean y: 3150169.5198300285
[2025-11-25 06:09:36] 2025-11-25 06:08:28,429 | INFO     | intersect: -3617421260.8781037
[2025-11-25 06:09:36] 2025-11-25 06:08:28,430 | INFO     | chi2: 63.88202366612917
[2025-11-25 06:09:36] 2025-11-25 06:08:28,435 | INFO     | sum of square deviations: 106816216706.02286
[2025-11-25 06:09:36] 2025-11-25 06:08:28,463 | INFO     | sum of deviations: 505766610071.9167
[2025-11-25 06:09:36] 2025-11-25 06:08:28,464 | INFO     | mean x: 1764029075.770328
[2025-11-25 06:09:36] 2025-11-25 06:08:28,464 | INFO     | mean y: 3168833.0057061343
[2025-11-25 06:09:36] 2025-11-25 06:08:28,464 | INFO     | intersect: -8349373816.731755
[2025-11-25 06:09:36] 2025-11-25 06:08:28,465 | INFO     | chi2: 59.21566571497663
[2025-11-25 06:09:36] 2025-11-25 06:08:28,465 | INFO     | current chi2=59.21566571497663 (change=7.304649545137511 %)
[2025-11-25 06:09:36] 2025-11-25 06:08:28,465 | INFO     | right removable region: 700
[2025-11-25 06:09:36] 2025-11-25 06:08:28,466 | INFO     | sum of square deviations: 106815459696.0228
[2025-11-25 06:09:36] 2025-11-25 06:08:28,503 | INFO     | sum of deviations: -112640486924.10034
[2025-11-25 06:09:36] 2025-11-25 06:08:28,503 | INFO     | mean x: 1764029380.770328
[2025-11-25 06:09:36] 2025-11-25 06:08:28,503 | INFO     | mean y: 3172466.1298145507
[2025-11-25 06:09:36] 2025-11-25 06:08:28,503 | INFO     | intersect: 1863400648.116354
[2025-11-25 06:09:36] 2025-11-25 06:08:28,504 | INFO     | chi2: 58.694740846869536
[2025-11-25 06:09:36] 2025-11-25 06:08:28,504 | INFO     | current chi2=58.694740846869536 (change=8.120097832796084 %)
[2025-11-25 06:09:36] 2025-11-25 06:08:28,505 | INFO     | left removable region: 10
[2025-11-25 06:09:36] 2025-11-25 06:08:28,505 | INFO     | sum of square deviations: 101865647204.49905
[2025-11-25 06:09:36] 2025-11-25 06:08:28,542 | INFO     | sum of deviations: -96252107429.68103
[2025-11-25 06:09:36] 2025-11-25 06:08:28,542 | INFO     | mean x: 1764029350.2985506
[2025-11-25 06:09:36] 2025-11-25 06:08:28,542 | INFO     | mean y: 3216864.8188405796
[2025-11-25 06:09:36] 2025-11-25 06:08:28,542 | INFO     | intersect: 1670035337.91197
[2025-11-25 06:09:36] 2025-11-25 06:08:28,551 | INFO     | chi2: 48.606450141807194
[2025-11-25 06:09:36] 2025-11-25 06:08:28,552 | INFO     | current memory leak: -0.94 B/s (using 690 data points, chi2=48.61)
[2025-11-25 06:09:36] 2025-11-25 06:08:28,553 | INFO     | could have reported an average CPU frequency of 2399 MHz (26 samples)
[2025-11-25 06:09:36] 2025-11-25 06:08:28,553 | INFO     | ..............................
[2025-11-25 06:09:36] 2025-11-25 06:08:28,553 | INFO     | . Timing measurements:
[2025-11-25 06:09:36] 2025-11-25 06:08:28,553 | INFO     | . get job = 0 s
[2025-11-25 06:09:36] 2025-11-25 06:08:28,553 | INFO     | . initial setup = 11 s
[2025-11-25 06:09:36] 2025-11-25 06:08:28,553 | INFO     | . payload setup = 191 s
[2025-11-25 06:09:36] 2025-11-25 06:08:28,553 | INFO     | . stage-in = 0 s
[2025-11-25 06:09:36] 2025-11-25 06:08:28,553 | INFO     | . payload execution = 43195 s
[2025-11-25 06:09:36] 2025-11-25 06:08:28,554 | INFO     | . stage-out = 7 s
[2025-11-25 06:09:36] 2025-11-25 06:08:28,554 | INFO     | . log creation = 2 s
[2025-11-25 06:09:36] 2025-11-25 06:08:28,554 | INFO     | ..............................
[2025-11-25 06:09:36] 2025-11-25 06:08:29,129 | INFO     | 
[2025-11-25 06:09:36] 2025-11-25 06:08:29,130 | INFO     | job summary report
[2025-11-25 06:09:36] 2025-11-25 06:08:29,130 | INFO     | --------------------------------------------------
[2025-11-25 06:09:36] 2025-11-25 06:08:29,130 | INFO     | PanDA job id: 6890966959
[2025-11-25 06:09:36] 2025-11-25 06:08:29,130 | INFO     | task id: 47483661
[2025-11-25 06:09:36] 2025-11-25 06:08:29,130 | INFO     | errors: (none)
[2025-11-25 06:09:36] 2025-11-25 06:08:29,130 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 06:09:36] 2025-11-25 06:08:29,130 | INFO     | pilot state: finished 
[2025-11-25 06:09:36] 2025-11-25 06:08:29,130 | INFO     | transexitcode: 0
[2025-11-25 06:09:36] 2025-11-25 06:08:29,130 | INFO     | exeerrorcode: 0
[2025-11-25 06:09:36] 2025-11-25 06:08:29,130 | INFO     | exeerrordiag: 
[2025-11-25 06:09:36] 2025-11-25 06:08:29,131 | INFO     | exitcode: 0
[2025-11-25 06:09:36] 2025-11-25 06:08:29,131 | INFO     | exitmsg: OK
[2025-11-25 06:09:36] 2025-11-25 06:08:29,131 | INFO     | cpuconsumptiontime: 262195 s
[2025-11-25 06:09:36] 2025-11-25 06:08:29,131 | INFO     | nevents: 1000
[2025-11-25 06:09:36] 2025-11-25 06:08:29,131 | INFO     | neventsw: 0
[2025-11-25 06:09:36] 2025-11-25 06:08:29,131 | INFO     | pid: 2126812
[2025-11-25 06:09:36] 2025-11-25 06:08:29,131 | INFO     | pgrp: 2126812
[2025-11-25 06:09:36] 2025-11-25 06:08:29,131 | INFO     | corecount: 12
[2025-11-25 06:09:36] 2025-11-25 06:08:29,131 | INFO     | event service: False
[2025-11-25 06:09:36] 2025-11-25 06:08:29,131 | INFO     | sizes: {0: 2283467, 1: 2284346, 2: 2284346, 13: 2284374, 24: 2284430, 34: 2284458, 45: 2284614, 56: 2284642, 67: 2284670, 78: 2284698, 88: 2284754, 99: 2285062, 11
[2025-11-25 06:09:36] 2025-11-25 06:08:29,132 | INFO     | --------------------------------------------------
[2025-11-25 06:09:36] 2025-11-25 06:08:29,132 | INFO     | 
[2025-11-25 06:09:36] 2025-11-25 06:08:29,132 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/3
[2025-11-25 06:09:36] 2025-11-25 06:08:29,671 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 06:09:36] 2025-11-25 06:08:29,671 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 06:09:36] 2025-11-25 06:08:29,672 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 06:09:36] 2025-11-25 06:08:29,672 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 06:09:36] 2025-11-25 06:08:29,672 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 06:09:36] 2025-11-25 06:08:29,672 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 06:09:36] 2025-11-25 06:08:29,672 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 06:09:36] 2025-11-25 06:08:29,672 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 06:09:36] 2025-11-25 06:08:29,672 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 06:09:36] 2025-11-25 06:08:29,672 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 06:09:36] 2025-11-25 06:08:29,672 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 06:09:36] 2025-11-25 06:08:29,673 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 06:09:36] 2025-11-25 06:08:29,673 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 06:09:36] 2025-11-25 06:08:29,673 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 06:09:36] 2025-11-25 06:08:29,673 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 06:09:36] 2025-11-25 06:08:29,673 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 06:09:36] 2025-11-25 06:08:29,673 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 06:09:36] 2025-11-25 06:08:29,673 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 06:09:36] 2025-11-25 06:08:29,673 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 06:09:36] 2025-11-25 06:08:29,673 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 06:09:36] 2025-11-25 06:08:29,674 | INFO     | job 6890966959 has completed (purged errors)
[2025-11-25 06:09:36] 2025-11-25 06:08:29,674 | INFO     | overall cleanup function is called
[2025-11-25 06:09:36] 2025-11-25 06:08:30,727 | INFO     | --- collectZombieJob: --- 10, [2126812]
[2025-11-25 06:09:36] 2025-11-25 06:08:30,727 | INFO     | zombie collector waiting for pid 2126812
[2025-11-25 06:09:36] 2025-11-25 06:08:30,727 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 06:09:36] 2025-11-25 06:08:30,727 | INFO     | collected zombie processes
[2025-11-25 06:09:36] 2025-11-25 06:08:30,727 | INFO     | will attempt to kill all subprocesses of pid=2126812
[2025-11-25 06:09:36] 2025-11-25 06:08:31,900 | INFO     | process IDs to be killed: [2126812] (in reverse order)
[2025-11-25 06:09:36] 2025-11-25 06:08:45,080 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 06:09:36] 2025-11-25 06:08:45,080 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 06:09:36] 2025-11-25 06:08:45,129 | INFO     | did not find any defunct processes belonging to 2126812
[2025-11-25 06:09:36] 2025-11-25 06:08:45,173 | INFO     | did not find any defunct processes belonging to 2126812
[2025-11-25 06:09:36] 2025-11-25 06:08:45,243 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 06:09:36] 2025-11-25 06:08:45,243 | INFO     | ready for new job
[2025-11-25 06:09:36] 2025-11-25 06:08:45,243 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 06:09:36] 2025-11-25 06:08:45,248 | INFO     | ***************************************
[2025-11-25 06:09:36] 2025-11-25 06:08:45,249 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 06:09:36] 2025-11-25 06:08:45,249 | INFO     | ***************************************
[2025-11-25 06:09:36] 2025-11-25 06:08:45,249 | INFO     | 
[2025-11-25 06:09:36] 2025-11-25 06:08:45,289 | INFO     | architecture information:
[2025-11-25 06:09:36] 2025-11-25 06:08:45,315 | INFO     | executing command: cat /etc/os-release
[2025-11-25 06:09:36] 2025-11-25 06:08:45,888 | INFO     | cat /etc/os-release:
[2025-11-25 06:09:36] NAME="CentOS Linux"
[2025-11-25 06:09:36] VERSION="7 (Core)"
[2025-11-25 06:09:36] ID="centos"
[2025-11-25 06:09:36] ID_LIKE="rhel fedora"
[2025-11-25 06:09:36] VERSION_ID="7"
[2025-11-25 06:09:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 06:09:36] ANSI_COLOR="0;31"
[2025-11-25 06:09:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 06:09:36] HOME_URL="https://www.centos.org/"
[2025-11-25 06:09:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 06:09:36] 
[2025-11-25 06:09:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 06:09:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 06:09:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 06:09:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 06:09:36] 
[2025-11-25 06:09:36] 2025-11-25 06:08:45,888 | INFO     | ***************************************
[2025-11-25 06:09:36] 2025-11-25 06:08:46,395 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/3
[2025-11-25 06:09:36] 2025-11-25 06:08:46,901 | INFO     | sufficient remaining disk space (325722308608 B)
[2025-11-25 06:09:36] 2025-11-25 06:08:46,901 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 06:09:36] 2025-11-25 06:08:46,901 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 06:09:36] 2025-11-25 06:08:46,901 | INFO     | update_server=False
[2025-11-25 06:09:36] 2025-11-25 06:08:46,901 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 06:09:36] 2025-11-25 06:08:47,003 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 06:09:36] 2025-11-25 06:08:47,003 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 06:09:36] 2025-11-25 06:08:47,003 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 06:09:36] 2025-11-25 06:08:47,003 | INFO     | will abort loop
[2025-11-25 06:09:36] 2025-11-25 06:08:47,471 | INFO     | all data control threads have been joined
[2025-11-25 06:09:36] 2025-11-25 06:08:47,823 | INFO     | all job control threads have been joined
[2025-11-25 06:09:36] 2025-11-25 06:08:47,867 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 06:09:36] 2025-11-25 06:08:47,871 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 06:09:36] 2025-11-25 06:08:47,911 | INFO     | [job] retrieve thread has finished
[2025-11-25 06:09:36] 2025-11-25 06:08:47,999 | INFO     | [payload] validate_post thread has finished
[2025-11-25 06:09:36] 2025-11-25 06:08:48,007 | INFO     | [job] job monitor thread has finished
[2025-11-25 06:09:36] 2025-11-25 06:08:48,179 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 06:09:36] 2025-11-25 06:08:48,239 | INFO     | all payload control threads have been joined
[2025-11-25 06:09:36] 2025-11-25 06:08:48,475 | INFO     | [data] control thread has finished
[2025-11-25 06:09:36] 2025-11-25 06:08:48,699 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 06:09:36] 2025-11-25 06:08:48,827 | INFO     | [job] control thread has finished
[2025-11-25 06:09:36] 2025-11-25 06:08:48,883 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 06:09:36] 2025-11-25 06:08:49,039 | INFO     | [job] validate thread has finished
[2025-11-25 06:09:36] 2025-11-25 06:08:49,047 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 06:09:36] 2025-11-25 06:08:49,243 | INFO     | [payload] control thread has finished
[2025-11-25 06:09:36] 2025-11-25 06:08:49,255 | INFO     | [data] copytool_in thread has finished
[2025-11-25 06:09:36] 2025-11-25 06:08:49,267 | INFO     | [payload] failed_post thread has finished
[2025-11-25 06:09:36] 2025-11-25 06:08:49,875 | INFO     | [data] copytool_out thread has finished
[2025-11-25 06:09:36] 2025-11-25 06:08:49,883 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 06:09:36] 2025-11-25 06:08:50,887 | INFO     | [job] queue monitor thread has finished
[2025-11-25 06:09:36] 2025-11-25 06:08:51,891 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 06:09:36] 2025-11-25 06:09:02,684 | INFO     | PID=2088967 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 06:09:36] 2025-11-25 06:09:02,684 | INFO     | .. there are 19 such processes running
[2025-11-25 06:09:36] 2025-11-25 06:09:02,685 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 06:09:36] 2025-11-25 06:09:02,685 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 06:09:36] 2025-11-25 06:09:02,685 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 06:09:36] 2025-11-25 06:09:27,611 | INFO     | [monitor] cgroup control has ended
[2025-11-25 06:09:36] 2025-11-25 06:09:27,863 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140176909109056)>', '<ExcThread(monitor, started 140176256923392)>']
[2025-11-25 06:09:36] 2025-11-25 06:09:28,827 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 06:09:36] 2025-11-25 06:09:28,827 | INFO     | [monitor] control thread has ended
[2025-11-25 06:09:36] 2025-11-25 06:09:32,887 | INFO     | all workflow threads have been joined
[2025-11-25 06:09:36] 2025-11-25 06:09:32,887 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 06:09:36] 2025-11-25 06:09:32,887 | INFO     | traces error code: 0
[2025-11-25 06:09:36] 2025-11-25 06:09:32,887 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 06:09:36] 2025-11-25 06:09:33,243 [wrapper] ==== pilot stdout END ====
[2025-11-25 06:09:36] 2025-11-25 06:09:33,327 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 06:09:36] 2025-11-25 06:09:33,395 [wrapper] pilotpid: 2088967
[2025-11-25 06:09:36] 2025-11-25 06:09:33,507 [wrapper] Pilot exit status: 0
[2025-11-25 06:09:36] 2025-11-25 06:09:33,708 [wrapper] pandaids: 6890966959
[2025-11-25 06:09:36] 2025-11-25 06:09:34,183 [wrapper] cleanup supervisor_pilot 3620530 2088968
[2025-11-25 06:09:36] 2025-11-25 06:09:34,285 [wrapper] Test setup, not cleaning
[2025-11-25 06:09:36] 2025-11-25 06:09:34,347 [wrapper] apfmon messages muted
[2025-11-25 06:09:36] 2025-11-25 06:09:34,452 [wrapper] ==== wrapper stdout END ====
[2025-11-25 06:09:36] 2025-11-25 06:09:34,491 [wrapper] ==== wrapper stderr END ====
[2025-11-25 06:09:36]  *** Error codes and diagnostics ***
[2025-11-25 06:09:36]     "exeErrorCode": 0,
[2025-11-25 06:09:36]     "exeErrorDiag": "",
[2025-11-25 06:09:36]     "pilotErrorCode": 0,
[2025-11-25 06:09:36]     "pilotErrorDiag": "",
[2025-11-25 06:09:36]  *** Listing of results directory ***
[2025-11-25 06:09:36] total 1315876
[2025-11-25 06:09:36] -rw-r--r-- 1 boinc boinc      5112 Nov 18 03:56 queuedata.json
[2025-11-25 06:09:36] -rw-r--r-- 1 boinc boinc    576529 Nov 18 03:56 pilot3.tar.gz
[2025-11-25 06:09:36] -rwx------ 1 boinc boinc     36292 Nov 18 03:57 runpilot2-wrapper.sh
[2025-11-25 06:09:36] -rw-rw-r-- 1 boinc boinc       100 Nov 24 17:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 06:09:36] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 17:51 run_atlas
[2025-11-25 06:09:36] -rw-rw-r-- 1 boinc boinc       105 Nov 24 17:51 job.xml
[2025-11-25 06:09:36] -rw-r--r-- 2 boinc boinc 408498985 Nov 24 17:51 EVNT.47483658._000031.pool.root.1
[2025-11-25 06:09:36] -rw-r--r-- 2 boinc boinc     15120 Nov 24 17:51 start_atlas.sh
[2025-11-25 06:09:36] drwxrwx--x 2 boinc boinc      4096 Nov 24 17:51 shared
[2025-11-25 06:09:36] -rw-r--r-- 2 boinc boinc    590099 Nov 24 17:51 input.tar.gz
[2025-11-25 06:09:36] -rw-rw-r-- 1 boinc boinc      7042 Nov 24 17:51 init_data.xml
[2025-11-25 06:09:36] -rw-rw-r-- 1 boinc boinc         0 Nov 24 17:51 boinc_setup_complete
[2025-11-25 06:09:36] -rw-rw-r-- 1 boinc boinc         0 Nov 24 17:51 boinc_lockfile
[2025-11-25 06:09:36] -rw-rw-r-- 1 boinc boinc      2771 Nov 24 17:51 pandaJob.out
[2025-11-25 06:09:36] -rw------- 1 boinc boinc    991801 Nov 24 17:57 agis_schedconf.cvmfs.json
[2025-11-25 06:09:36] drwx------ 5 boinc boinc      4096 Nov 24 17:57 pilot3
[2025-11-25 06:09:36] -rw-rw-r-- 1 boinc boinc       533 Nov 25 05:12 boinc_task_state.xml
[2025-11-25 06:09:36] -rw------- 1 boinc boinc 919122730 Nov 25 06:03 HITS.47483661._000792.pool.root.1
[2025-11-25 06:09:36] -rw------- 1 boinc boinc      1038 Nov 25 06:05 memory_monitor_summary.json
[2025-11-25 06:09:36] -rw------- 1 boinc boinc   1516227 Nov 25 06:05 agis_ddmendpoints.agis.ALL.json
[2025-11-25 06:09:36] -rw------- 1 boinc boinc   2340964 Nov 25 06:05 log.47483661._000792.job.log.tgz.1
[2025-11-25 06:09:36] -rw------- 1 boinc boinc      7887 Nov 25 06:08 heartbeat.json
[2025-11-25 06:09:36] -rw------- 1 boinc boinc        95 Nov 25 06:09 pilot_heartbeat.json
[2025-11-25 06:09:36] -rw-rw-r-- 1 boinc boinc      8192 Nov 25 06:09 boinc_mmap_file
[2025-11-25 06:09:36] -rw------- 1 boinc boinc      5034 Nov 25 06:09 pilotlog.txt
[2025-11-25 06:09:36] -rw-rw-r-- 1 boinc boinc        29 Nov 25 06:09 wrapper_checkpoint.txt
[2025-11-25 06:09:36] -rw------- 1 boinc boinc   5615657 Nov 25 06:09 log.47483661._000792.job.log.1
[2025-11-25 06:09:36] -rw------- 1 boinc boinc       353 Nov 25 06:09 output.list
[2025-11-25 06:09:36] -rw-rw-r-- 1 boinc boinc       620 Nov 25 06:09 runtime_log
[2025-11-25 06:09:36] -rw------- 1 boinc boinc   7976960 Nov 25 06:09 result.tar.gz
[2025-11-25 06:09:36] -rw-rw-r-- 1 boinc boinc      9008 Nov 25 06:09 runtime_log.err
[2025-11-25 06:09:36] -rw------- 1 boinc boinc       660 Nov 25 06:09 NBhMDm60Rf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmE7JODm43LR4n.diag
[2025-11-25 06:09:36] -rw-rw-r-- 1 boinc boinc     21682 Nov 25 06:09 stderr.txt
[2025-11-25 06:09:36] HITS file was successfully produced:
[2025-11-25 06:09:36] -rw------- 1 boinc boinc 919122730 Nov 25 06:03 shared/HITS.pool.root.1
[2025-11-25 06:09:36]  *** Contents of shared directory: ***
[2025-11-25 06:09:36] total 1304908
[2025-11-25 06:09:36] -rw-r--r-- 2 boinc boinc 408498985 Nov 24 17:51 ATLAS.root_0
[2025-11-25 06:09:36] -rw-r--r-- 2 boinc boinc     15120 Nov 24 17:51 start_atlas.sh
[2025-11-25 06:09:36] -rw-r--r-- 2 boinc boinc    590099 Nov 24 17:51 input.tar.gz
[2025-11-25 06:09:36] -rw------- 1 boinc boinc 919122730 Nov 25 06:03 HITS.pool.root.1
[2025-11-25 06:09:36] -rw------- 1 boinc boinc   7976960 Nov 25 06:09 result.tar.gz
06:09:38 (2063580): run_atlas exited; CPU time 263789.242564
06:09:38 (2063580): called boinc_finish(0)

</stderr_txt>
]]>

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