Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:49:50 (9792): wrapper (7.7.26015): starting
01:49:50 (9792): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 01:49:50] Arguments: --nthreads 8
[2025-11-24 01:49:50] Threads: 8
[2025-11-24 01:49:50] Checking for CVMFS
[2025-11-24 01:49:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 01:49:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 01:49:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 01:49:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 01:49:51] 2.11.2.0 18458 281629 145600 153227 1 236 21536129 25165824 4039 130560 2 125398232 99.877 77244462 3046 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 01:49:51] CVMFS is ok
[2025-11-24 01:49:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 01:49:51] Checking for apptainer binary...
[2025-11-24 01:49:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 01:49:51] Running /usr/bin/apptainer --version
[2025-11-24 01:49:51] apptainer version 1.3.2-1.el7
[2025-11-24 01:49:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 01:49:54] cg-vwn434.simple-grid.lan
[2025-11-24 01:49:54] apptainer works
[2025-11-24 01:49:54] Set ATHENA_PROC_NUMBER=8
[2025-11-24 01:49:54] Set ATHENA_CORE_NUMBER=8
[2025-11-24 01:49:54] Starting ATLAS job with PandaID=6893860996
[2025-11-24 01:49:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 01:51:30]  *** The last 200 lines of the pilot log: ***
[2025-11-25 01:51:30] 2025-11-25 00:50:43,108 | INFO     | time since job start (86406s) is within the limit (172800.0s)
[2025-11-25 01:51:30] 2025-11-25 00:50:44,609 | INFO     | monitor loop #5737: job 0:6893860996 is in state 'finished'
[2025-11-25 01:51:30] 2025-11-25 00:50:44,610 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:51:30] 2025-11-25 00:50:45,115 | INFO     | time since job start (86408s) is within the limit (172800.0s)
[2025-11-25 01:51:30] 2025-11-25 00:50:47,118 | INFO     | monitor loop #5738: job 0:6893860996 is in state 'finished'
[2025-11-25 01:51:30] 2025-11-25 00:50:47,119 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:51:30] 2025-11-25 00:50:47,121 | INFO     | time since job start (86410s) is within the limit (172800.0s)
[2025-11-25 01:51:30] 2025-11-25 00:50:49,130 | INFO     | time since job start (86412s) is within the limit (172800.0s)
[2025-11-25 01:51:30] 2025-11-25 00:50:49,623 | INFO     | monitor loop #5739: job 0:6893860996 is in state 'finished'
[2025-11-25 01:51:30] 2025-11-25 00:50:49,623 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:51:30] 2025-11-25 00:50:50,349 | INFO     | PID=13599 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 01:51:30] 2025-11-25 00:50:50,349 | INFO     | .. there are 9 such processes running
[2025-11-25 01:51:30] 2025-11-25 00:50:51,351 | INFO     | time since job start (86414s) is within the limit (172800.0s)
[2025-11-25 01:51:30] 2025-11-25 00:50:52,132 | INFO     | monitor loop #5740: job 0:6893860996 is in state 'finished'
[2025-11-25 01:51:30] 2025-11-25 00:50:52,133 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:51:30] 2025-11-25 00:50:53,142 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 01:51:30] 2025-11-25 00:50:53,143 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 01:51:30] 2025-11-25 00:50:53,145 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6893860996/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 01:51:30] 2025-11-25 00:50:53,145 | INFO     | extracted standard info from prmon json
[2025-11-25 01:51:30] 2025-11-25 00:50:53,145 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 01:51:30] 2025-11-25 00:50:53,146 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 01:51:30] 2025-11-25 00:50:53,181 | INFO     | fitting pss+swap vs Time
[2025-11-25 01:51:30] 2025-11-25 00:50:53,183 | INFO     | sum of square deviations: 874788270609.9877
[2025-11-25 01:51:30] 2025-11-25 00:50:53,275 | INFO     | sum of deviations: 1654730189633.1191
[2025-11-25 01:51:30] 2025-11-25 00:50:53,275 | INFO     | mean x: 1763988633.2193913
[2025-11-25 01:51:30] 2025-11-25 00:50:53,275 | INFO     | mean y: 2837357.5576786976
[2025-11-25 01:51:30] 2025-11-25 00:50:53,275 | INFO     | intersect: -3333884616.9178486
[2025-11-25 01:51:30] 2025-11-25 00:50:53,277 | INFO     | chi2: 20.970576114624247
[2025-11-25 01:51:30] 2025-11-25 00:50:53,279 | INFO     | sum of square deviations: 865535078427.5272
[2025-11-25 01:51:30] 2025-11-25 00:50:53,349 | INFO     | sum of deviations: 2108419313268.0344
[2025-11-25 01:51:30] 2025-11-25 00:50:53,349 | INFO     | mean x: 1763988480.7237215
[2025-11-25 01:51:30] 2025-11-25 00:50:53,349 | INFO     | mean y: 2844833.2982954546
[2025-11-25 01:51:30] 2025-11-25 00:50:53,349 | INFO     | intersect: -4294181912.1655507
[2025-11-25 01:51:30] 2025-11-25 00:50:53,351 | INFO     | chi2: 17.80943504822039
[2025-11-25 01:51:30] 2025-11-25 00:50:53,351 | INFO     | current chi2=17.80943504822039 (change=15.074173685668907 %)
[2025-11-25 01:51:30] 2025-11-25 00:50:53,351 | INFO     | right removable region: 1407
[2025-11-25 01:51:30] 2025-11-25 00:50:53,354 | INFO     | sum of square deviations: 865534027397.5276
[2025-11-25 01:51:30] 2025-11-25 00:50:53,363 | INFO     | time since job start (86416s) is within the limit (172800.0s)
[2025-11-25 01:51:30] 2025-11-25 00:50:53,413 | INFO     | sum of deviations: 1196749279743.2156
[2025-11-25 01:51:30] 2025-11-25 00:50:53,413 | INFO     | mean x: 1763988785.7237215
[2025-11-25 01:51:30] 2025-11-25 00:50:53,413 | INFO     | mean y: 2844901.897727273
[2025-11-25 01:51:30] 2025-11-25 00:50:53,413 | INFO     | intersect: -2436172215.8202763
[2025-11-25 01:51:30] 2025-11-25 00:50:53,415 | INFO     | chi2: 18.224890313391974
[2025-11-25 01:51:30] 2025-11-25 00:50:53,415 | INFO     | current chi2=18.224890313391974 (change=13.09303943880452 %)
[2025-11-25 01:51:30] 2025-11-25 00:50:53,415 | INFO     | left removable region: 10
[2025-11-25 01:51:30] 2025-11-25 00:50:53,418 | INFO     | sum of square deviations: 845406491359.7819
[2025-11-25 01:51:30] 2025-11-25 00:50:53,480 | INFO     | sum of deviations: 1609011644075.2998
[2025-11-25 01:51:30] 2025-11-25 00:50:53,481 | INFO     | mean x: 1763988755.230494
[2025-11-25 01:51:30] 2025-11-25 00:50:53,481 | INFO     | mean y: 2856353.368647101
[2025-11-25 01:51:30] 2025-11-25 00:50:53,481 | INFO     | intersect: -3354438008.80093
[2025-11-25 01:51:30] 2025-11-25 00:50:53,483 | INFO     | chi2: 14.078611002632575
[2025-11-25 01:51:30] 2025-11-25 00:50:53,483 | INFO     | current memory leak: 1.90 B/s (using 1397 data points, chi2=14.08)
[2025-11-25 01:51:30] 2025-11-25 00:50:53,486 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-25 01:51:30] 2025-11-25 00:50:53,486 | INFO     | ..............................
[2025-11-25 01:51:30] 2025-11-25 00:50:53,486 | INFO     | . Timing measurements:
[2025-11-25 01:51:30] 2025-11-25 00:50:53,486 | INFO     | . get job = 0 s
[2025-11-25 01:51:30] 2025-11-25 00:50:53,486 | INFO     | . initial setup = 2 s
[2025-11-25 01:51:30] 2025-11-25 00:50:53,486 | INFO     | . payload setup = 29 s
[2025-11-25 01:51:30] 2025-11-25 00:50:53,487 | INFO     | . stage-in = 0 s
[2025-11-25 01:51:30] 2025-11-25 00:50:53,487 | INFO     | . payload execution = 86221 s
[2025-11-25 01:51:30] 2025-11-25 00:50:53,487 | INFO     | . stage-out = 7 s
[2025-11-25 01:51:30] 2025-11-25 00:50:53,487 | INFO     | . log creation = 2 s
[2025-11-25 01:51:30] 2025-11-25 00:50:53,487 | INFO     | ..............................
[2025-11-25 01:51:30] 2025-11-25 00:50:53,631 | INFO     | 
[2025-11-25 01:51:30] 2025-11-25 00:50:53,632 | INFO     | job summary report
[2025-11-25 01:51:30] 2025-11-25 00:50:53,632 | INFO     | --------------------------------------------------
[2025-11-25 01:51:30] 2025-11-25 00:50:53,632 | INFO     | PanDA job id: 6893860996
[2025-11-25 01:51:30] 2025-11-25 00:50:53,632 | INFO     | task id: 47523449
[2025-11-25 01:51:30] 2025-11-25 00:50:53,632 | INFO     | errors: (none)
[2025-11-25 01:51:30] 2025-11-25 00:50:53,632 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 01:51:30] 2025-11-25 00:50:53,632 | INFO     | pilot state: finished 
[2025-11-25 01:51:30] 2025-11-25 00:50:53,632 | INFO     | transexitcode: 0
[2025-11-25 01:51:30] 2025-11-25 00:50:53,632 | INFO     | exeerrorcode: 0
[2025-11-25 01:51:30] 2025-11-25 00:50:53,632 | INFO     | exeerrordiag: 
[2025-11-25 01:51:30] 2025-11-25 00:50:53,632 | INFO     | exitcode: 0
[2025-11-25 01:51:30] 2025-11-25 00:50:53,633 | INFO     | exitmsg: OK
[2025-11-25 01:51:30] 2025-11-25 00:50:53,633 | INFO     | cpuconsumptiontime: 333864 s
[2025-11-25 01:51:30] 2025-11-25 00:50:53,633 | INFO     | nevents: 1000
[2025-11-25 01:51:30] 2025-11-25 00:50:53,633 | INFO     | neventsw: 0
[2025-11-25 01:51:30] 2025-11-25 00:50:53,633 | INFO     | pid: 27350
[2025-11-25 01:51:30] 2025-11-25 00:50:53,633 | INFO     | pgrp: 27350
[2025-11-25 01:51:30] 2025-11-25 00:50:53,633 | INFO     | corecount: 8
[2025-11-25 01:51:30] 2025-11-25 00:50:53,633 | INFO     | event service: False
[2025-11-25 01:51:30] 2025-11-25 00:50:53,633 | INFO     | sizes: {0: 2298585, 1: 2298784, 2: 2298784, 12: 2298812, 18: 2299102, 23: 2299130, 86255: 2360510, 86263: 2370351, 86364: 2370541}
[2025-11-25 01:51:30] 2025-11-25 00:50:53,633 | INFO     | --------------------------------------------------
[2025-11-25 01:51:30] 2025-11-25 00:50:53,633 | INFO     | 
[2025-11-25 01:51:30] 2025-11-25 00:50:53,634 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-25 01:51:30] 2025-11-25 00:50:54,208 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 01:51:30] 2025-11-25 00:50:54,208 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 01:51:30] 2025-11-25 00:50:54,208 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 01:51:30] 2025-11-25 00:50:54,208 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 01:51:30] 2025-11-25 00:50:54,208 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 01:51:30] 2025-11-25 00:50:54,208 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 01:51:30] 2025-11-25 00:50:54,209 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 01:51:30] 2025-11-25 00:50:54,209 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 01:51:30] 2025-11-25 00:50:54,209 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 01:51:30] 2025-11-25 00:50:54,209 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 01:51:30] 2025-11-25 00:50:54,209 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 01:51:30] 2025-11-25 00:50:54,209 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 01:51:30] 2025-11-25 00:50:54,209 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 01:51:30] 2025-11-25 00:50:54,209 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 01:51:30] 2025-11-25 00:50:54,209 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 01:51:30] 2025-11-25 00:50:54,209 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 01:51:30] 2025-11-25 00:50:54,210 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 01:51:30] 2025-11-25 00:50:54,210 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 01:51:30] 2025-11-25 00:50:54,210 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 01:51:30] 2025-11-25 00:50:54,210 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 01:51:30] 2025-11-25 00:50:54,210 | INFO     | job 6893860996 has completed (purged errors)
[2025-11-25 01:51:30] 2025-11-25 00:50:54,210 | INFO     | overall cleanup function is called
[2025-11-25 01:51:30] 2025-11-25 00:50:55,233 | INFO     | --- collectZombieJob: --- 10, [27350]
[2025-11-25 01:51:30] 2025-11-25 00:50:55,234 | INFO     | zombie collector waiting for pid 27350
[2025-11-25 01:51:30] 2025-11-25 00:50:55,234 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 01:51:30] 2025-11-25 00:50:55,234 | INFO     | collected zombie processes
[2025-11-25 01:51:30] 2025-11-25 00:50:55,234 | INFO     | will attempt to kill all subprocesses of pid=27350
[2025-11-25 01:51:30] 2025-11-25 00:50:55,366 | INFO     | process IDs to be killed: [27350] (in reverse order)
[2025-11-25 01:51:30] 2025-11-25 00:50:56,258 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 01:51:30] 2025-11-25 00:50:56,258 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 01:51:30] 2025-11-25 00:50:56,262 | INFO     | did not find any defunct processes belonging to 27350
[2025-11-25 01:51:30] 2025-11-25 00:50:56,266 | INFO     | did not find any defunct processes belonging to 27350
[2025-11-25 01:51:30] 2025-11-25 00:50:56,306 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 01:51:30] 2025-11-25 00:50:56,307 | INFO     | ready for new job
[2025-11-25 01:51:30] 2025-11-25 00:50:56,307 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 01:51:30] 2025-11-25 00:50:56,314 | INFO     | ***************************************
[2025-11-25 01:51:30] 2025-11-25 00:50:56,314 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 01:51:30] 2025-11-25 00:50:56,314 | INFO     | ***************************************
[2025-11-25 01:51:30] 2025-11-25 00:50:56,314 | INFO     | 
[2025-11-25 01:51:30] 2025-11-25 00:50:56,315 | INFO     | pilot is running in a VM
[2025-11-25 01:51:30] 2025-11-25 00:50:56,315 | INFO     | architecture information:
[2025-11-25 01:51:30] 2025-11-25 00:50:56,321 | INFO     | executing command: cat /etc/os-release
[2025-11-25 01:51:30] 2025-11-25 00:50:56,573 | INFO     | cat /etc/os-release:
[2025-11-25 01:51:30] NAME="CentOS Linux"
[2025-11-25 01:51:30] VERSION="7 (Core)"
[2025-11-25 01:51:30] ID="centos"
[2025-11-25 01:51:30] ID_LIKE="rhel fedora"
[2025-11-25 01:51:30] VERSION_ID="7"
[2025-11-25 01:51:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 01:51:30] ANSI_COLOR="0;31"
[2025-11-25 01:51:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 01:51:30] HOME_URL="https://www.centos.org/"
[2025-11-25 01:51:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 01:51:30] 
[2025-11-25 01:51:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 01:51:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 01:51:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 01:51:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 01:51:30] 
[2025-11-25 01:51:30] 2025-11-25 00:50:56,573 | INFO     | ***************************************
[2025-11-25 01:51:30] 2025-11-25 00:50:57,076 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-25 01:51:30] 2025-11-25 00:50:57,259 | INFO     | sufficient remaining disk space (494625882112 B)
[2025-11-25 01:51:30] 2025-11-25 00:50:57,259 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 01:51:30] 2025-11-25 00:50:57,260 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 01:51:30] 2025-11-25 00:50:57,260 | INFO     | update_server=False
[2025-11-25 01:51:30] 2025-11-25 00:50:57,260 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 01:51:30] 2025-11-25 00:50:57,495 | INFO     | all data control threads have been joined
[2025-11-25 01:51:30] 2025-11-25 00:50:57,536 | INFO     | all job control threads have been joined
[2025-11-25 01:51:30] 2025-11-25 00:50:57,547 | INFO     | all payload control threads have been joined
[2025-11-25 01:51:30] 2025-11-25 00:50:58,060 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 01:51:30] 2025-11-25 00:50:58,155 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:51:30] 2025-11-25 00:50:58,156 | INFO     | aborting loop
[2025-11-25 01:51:30] 2025-11-25 00:50:58,265 | INFO     | [job] retrieve thread has finished
[2025-11-25 01:51:30] 2025-11-25 00:50:58,277 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 01:51:30] 2025-11-25 00:50:58,283 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 01:51:30] 2025-11-25 00:50:58,501 | INFO     | [data] control thread has finished
[2025-11-25 01:51:30] 2025-11-25 00:50:58,507 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 01:51:30] 2025-11-25 00:50:58,536 | INFO     | [job] validate thread has finished
[2025-11-25 01:51:30] 2025-11-25 00:50:58,542 | INFO     | [job] control thread has finished
[2025-11-25 01:51:30] 2025-11-25 00:50:58,553 | INFO     | [payload] control thread has finished
[2025-11-25 01:51:30] 2025-11-25 00:50:58,646 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:51:30] 2025-11-25 00:50:58,766 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 01:51:30] 2025-11-25 00:50:59,161 | INFO     | [job] job monitor thread has finished
[2025-11-25 01:51:30] 2025-11-25 00:50:59,238 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 01:51:30] 2025-11-25 00:50:59,437 | INFO     | [data] copytool_in thread has finished
[2025-11-25 01:51:30] 2025-11-25 00:50:59,652 | INFO     | [job] queue monitor thread has finished
[2025-11-25 01:51:30] 2025-11-25 00:50:59,670 | INFO     | [payload] failed_post thread has finished
[2025-11-25 01:51:30] 2025-11-25 00:50:59,741 | INFO     | [payload] validate_post thread has finished
[2025-11-25 01:51:30] 2025-11-25 00:51:00,514 | INFO     | [data] copytool_out thread has finished
[2025-11-25 01:51:30] 2025-11-25 00:51:02,070 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 01:51:30] 2025-11-25 00:51:07,466 | INFO     | [monitor] cgroup control has ended
[2025-11-25 01:51:30] 2025-11-25 00:51:08,517 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140538915292992)>', '<ExcThread(monitor, started 140538460215040)>']
[2025-11-25 01:51:30] 2025-11-25 00:51:13,543 | INFO     | all workflow threads have been joined
[2025-11-25 01:51:30] 2025-11-25 00:51:13,543 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 01:51:30] 2025-11-25 00:51:13,544 | INFO     | traces error code: 0
[2025-11-25 01:51:30] 2025-11-25 00:51:13,544 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 01:51:30] 2025-11-25 00:51:26,538 | INFO     | PID=13599 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 01:51:30] 2025-11-25 00:51:26,539 | INFO     | .. there are 9 such processes running
[2025-11-25 01:51:30] 2025-11-25 00:51:26,540 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 01:51:30] 2025-11-25 00:51:26,541 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 01:51:30] 2025-11-25 00:51:26,541 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 01:51:30] 2025-11-25 00:51:26,541 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 01:51:30] 2025-11-25 00:51:26,541 | INFO     | [monitor] control thread has ended
[2025-11-25 01:51:30] 2025-11-25 00:51:26,817 [wrapper] ==== pilot stdout END ====
[2025-11-25 01:51:30] 2025-11-25 00:51:26,825 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 01:51:30] 2025-11-25 00:51:26,831 [wrapper] pilotpid: 13599
[2025-11-25 01:51:30] 2025-11-25 00:51:26,837 [wrapper] Pilot exit status: 0
[2025-11-25 01:51:30] 2025-11-25 00:51:26,876 [wrapper] pandaids: 6893860996
[2025-11-25 01:51:30] 2025-11-25 00:51:27,747 [wrapper] cleanup supervisor_pilot 22661 13600
[2025-11-25 01:51:30] 2025-11-25 00:51:27,884 [wrapper] Test setup, not cleaning
[2025-11-25 01:51:30] 2025-11-25 00:51:27,957 [wrapper] apfmon messages muted
[2025-11-25 01:51:30] 2025-11-25 00:51:28,057 [wrapper] ==== wrapper stdout END ====
[2025-11-25 01:51:30] 2025-11-25 00:51:28,116 [wrapper] ==== wrapper stderr END ====
[2025-11-25 01:51:30]  *** Error codes and diagnostics ***
[2025-11-25 01:51:30]     "exeErrorCode": 0,
[2025-11-25 01:51:30]     "exeErrorDiag": "",
[2025-11-25 01:51:30]     "pilotErrorCode": 0,
[2025-11-25 01:51:30]     "pilotErrorDiag": "",
[2025-11-25 01:51:30]  *** Listing of results directory ***
[2025-11-25 01:51:30] total 1313520
[2025-11-25 01:51:30] -rw-r--r--. 1 boinc boinc    576529 Nov 20 14:50 pilot3.tar.gz
[2025-11-25 01:51:30] -rwx------. 1 boinc boinc     36292 Nov 20 14:51 runpilot2-wrapper.sh
[2025-11-25 01:51:30] -rw-r--r--. 1 boinc boinc      5112 Nov 20 14:51 queuedata.json
[2025-11-25 01:51:30] -rw-r--r--. 1 boinc boinc       100 Nov 24 01:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 01:51:30] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 01:49 run_atlas
[2025-11-25 01:51:30] -rw-r--r--. 1 boinc boinc       105 Nov 24 01:49 job.xml
[2025-11-25 01:51:30] -rw-r--r--. 2 boinc boinc 407254688 Nov 24 01:49 EVNT.47493127._000564.pool.root.1
[2025-11-25 01:51:30] -rw-r--r--. 1 boinc boinc      6392 Nov 24 01:49 init_data.xml
[2025-11-25 01:51:30] -rw-r--r--. 2 boinc boinc     15847 Nov 24 01:49 start_atlas.sh
[2025-11-25 01:51:30] drwxrwx--x. 2 boinc boinc        68 Nov 24 01:49 shared
[2025-11-25 01:51:30] -rw-r--r--. 2 boinc boinc    590098 Nov 24 01:49 input.tar.gz
[2025-11-25 01:51:30] -rw-r--r--. 1 boinc boinc         0 Nov 24 01:49 boinc_lockfile
[2025-11-25 01:51:30] -rw-r--r--. 1 boinc boinc      2785 Nov 24 01:49 pandaJob.out
[2025-11-25 01:51:30] -rw-------. 1 boinc boinc    989786 Nov 24 01:50 agis_schedconf.cvmfs.json
[2025-11-25 01:51:30] drwx------. 5 boinc boinc      4096 Nov 24 01:50 pilot3
[2025-11-25 01:51:30] -rw-r--r--. 1 boinc boinc       533 Nov 25 01:17 boinc_task_state.xml
[2025-11-25 01:51:30] -rw-------. 1 boinc boinc 906001178 Nov 25 01:47 HITS.47523449._005635.pool.root.1
[2025-11-25 01:51:30] -rw-------. 1 boinc boinc      1029 Nov 25 01:49 memory_monitor_summary.json
[2025-11-25 01:51:30] -rw-------. 1 boinc boinc   1516227 Nov 25 01:49 agis_ddmendpoints.agis.ALL.json
[2025-11-25 01:51:30] -rw-------. 1 boinc boinc   2489876 Nov 25 01:49 log.47523449._005635.job.log.tgz.1
[2025-11-25 01:51:30] -rw-------. 1 boinc boinc      8631 Nov 25 01:50 heartbeat.json
[2025-11-25 01:51:30] -rw-------. 1 boinc boinc        95 Nov 25 01:51 pilot_heartbeat.json
[2025-11-25 01:51:30] -rw-------. 1 boinc boinc       820 Nov 25 01:51 pilotlog.txt
[2025-11-25 01:51:30] -rw-r--r--. 1 boinc boinc        29 Nov 25 01:51 wrapper_checkpoint.txt
[2025-11-25 01:51:30] -rw-r--r--. 1 boinc boinc      8192 Nov 25 01:51 boinc_mmap_file
[2025-11-25 01:51:30] -rw-------. 1 boinc boinc  11452419 Nov 25 01:51 log.47523449._005635.job.log.1
[2025-11-25 01:51:30] -rw-------. 1 boinc boinc       353 Nov 25 01:51 output.list
[2025-11-25 01:51:30] -rw-r--r--. 1 boinc boinc       620 Nov 25 01:51 runtime_log
[2025-11-25 01:51:30] -rw-------. 1 boinc boinc  13967360 Nov 25 01:51 result.tar.gz
[2025-11-25 01:51:30] -rw-------. 1 boinc boinc       662 Nov 25 01:51 Ua1MDmKFKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8zHKDms1mvRn.diag
[2025-11-25 01:51:30] -rw-r--r--. 1 boinc boinc      8817 Nov 25 01:51 runtime_log.err
[2025-11-25 01:51:30] -rw-r--r--. 1 boinc boinc     21472 Nov 25 01:51 stderr.txt
[2025-11-25 01:51:30] HITS file was successfully produced:
[2025-11-25 01:51:30] -rw-------. 1 boinc boinc 906001178 Nov 25 01:47 shared/HITS.pool.root.1
[2025-11-25 01:51:30]  *** Contents of shared directory: ***
[2025-11-25 01:51:30] total 1296716
[2025-11-25 01:51:30] -rw-r--r--. 2 boinc boinc 407254688 Nov 24 01:49 ATLAS.root_0
[2025-11-25 01:51:30] -rw-r--r--. 2 boinc boinc     15847 Nov 24 01:49 start_atlas.sh
[2025-11-25 01:51:30] -rw-r--r--. 2 boinc boinc    590098 Nov 24 01:49 input.tar.gz
[2025-11-25 01:51:30] -rw-------. 1 boinc boinc 906001178 Nov 25 01:47 HITS.pool.root.1
[2025-11-25 01:51:30] -rw-------. 1 boinc boinc  13967360 Nov 25 01:51 result.tar.gz
01:51:32 (9792): run_atlas exited; CPU time 334368.274070
01:51:32 (9792): called boinc_finish(0)

</stderr_txt>
]]>

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