Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:40:53 (1276633): wrapper (7.7.26015): starting
01:40:53 (1276633): wrapper: running run_atlas (--nthreads 4)
[2025-11-23 01:40:53] Arguments: --nthreads 4
[2025-11-23 01:40:53] Threads: 4
[2025-11-23 01:40:53] Checking for CVMFS
[2025-11-23 01:40:53] No cvmfs_config command found, will try listing directly
[2025-11-23 01:40:53] CVMFS is ok
[2025-11-23 01:40:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 01:40:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 01:40:53] Further information can be found at the LHC@home message board.
[2025-11-23 01:40:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 01:40:53] Checking for apptainer binary...
[2025-11-23 01:40:53] which: no apptainer in ((null))
[2025-11-23 01:40:53] apptainer is not installed, using version from CVMFS
[2025-11-23 01:40:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 01:40:54] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot108/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2025-11-23 01:40:54] apptainer works
[2025-11-23 01:40:54] Set ATHENA_PROC_NUMBER=4
[2025-11-23 01:40:54] Set ATHENA_CORE_NUMBER=4
[2025-11-23 01:40:54] Starting ATLAS job with PandaID=6893860992
[2025-11-23 01:40:54] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot108/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 18:14:01]  *** The last 200 lines of the pilot log: ***
[2025-11-23 18:14:01] 2025-11-23 17:00:48,871 | INFO     | using path: /scratch/boinc/var/slot108/slots/0/PanDA_Pilot-6893860992/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 18:14:01] 2025-11-23 17:00:48,872 | INFO     | extracted standard info from prmon json
[2025-11-23 18:14:01] 2025-11-23 17:00:48,872 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 18:14:01] 2025-11-23 17:00:48,872 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 18:14:01] 2025-11-23 17:00:48,888 | INFO     | fitting pss+swap vs Time
[2025-11-23 18:14:01] 2025-11-23 17:00:48,890 | INFO     | sum of square deviations: 276921370392.5005
[2025-11-23 18:14:01] 2025-11-23 17:00:48,912 | INFO     | sum of deviations: 754733449109.5413
[2025-11-23 18:14:01] 2025-11-23 17:00:48,912 | INFO     | mean x: 1763887843.03946
[2025-11-23 18:14:01] 2025-11-23 17:00:48,912 | INFO     | mean y: 2268478.117341641
[2025-11-23 18:14:01] 2025-11-23 17:00:48,912 | INFO     | intersect: -4805107542.493359
[2025-11-23 18:14:01] 2025-11-23 17:00:48,914 | INFO     | chi2: 4.7972097136157466
[2025-11-23 18:14:01] 2025-11-23 17:00:48,915 | INFO     | sum of square deviations: 272630315479.99277
[2025-11-23 18:14:01] 2025-11-23 17:00:48,938 | INFO     | monitor loop #3930: job 0:6893860992 is in state 'finished'
[2025-11-23 18:14:01] 2025-11-23 17:00:48,937 | INFO     | sum of deviations: 973975431475.3163
[2025-11-23 18:14:01] 2025-11-23 17:00:48,938 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 18:14:01] 2025-11-23 17:00:48,938 | INFO     | mean x: 1763887690.539666
[2025-11-23 18:14:01] 2025-11-23 17:00:48,939 | INFO     | mean y: 2276266.9258872652
[2025-11-23 18:14:01] 2025-11-23 17:00:48,939 | INFO     | intersect: -6299235989.488774
[2025-11-23 18:14:01] 2025-11-23 17:00:48,940 | INFO     | chi2: 2.2558216457238087
[2025-11-23 18:14:01] 2025-11-23 17:00:48,940 | INFO     | current chi2=2.2558216457238087 (change=52.976380429623674 %)
[2025-11-23 18:14:01] 2025-11-23 17:00:48,941 | INFO     | sum of square deviations: 268383819542.4846
[2025-11-23 18:14:01] 2025-11-23 17:00:48,964 | INFO     | sum of deviations: 1004090295968.5906
[2025-11-23 18:14:01] 2025-11-23 17:00:48,964 | INFO     | mean x: 1763887538.039874
[2025-11-23 18:14:01] 2025-11-23 17:00:48,964 | INFO     | mean y: 2277344.589716684
[2025-11-23 18:14:01] 2025-11-23 17:00:48,964 | INFO     | intersect: -6596862510.953638
[2025-11-23 18:14:01] 2025-11-23 17:00:48,965 | INFO     | chi2: 2.112432796634946
[2025-11-23 18:14:01] 2025-11-23 17:00:48,965 | INFO     | current chi2=2.112432796634946 (change=6.356391222713642 %)
[2025-11-23 18:14:01] 2025-11-23 17:00:48,965 | INFO     | right removable region: 952
[2025-11-23 18:14:01] 2025-11-23 17:00:48,966 | INFO     | sum of square deviations: 272630292299.99283
[2025-11-23 18:14:01] 2025-11-23 17:00:48,989 | INFO     | sum of deviations: 567493113612.1715
[2025-11-23 18:14:01] 2025-11-23 17:00:48,990 | INFO     | mean x: 1763887995.539666
[2025-11-23 18:14:01] 2025-11-23 17:00:48,990 | INFO     | mean y: 2275121.784968685
[2025-11-23 18:14:01] 2025-11-23 17:00:48,990 | INFO     | intersect: -3669342885.910515
[2025-11-23 18:14:01] 2025-11-23 17:00:48,991 | INFO     | chi2: 2.7943826139047214
[2025-11-23 18:14:01] 2025-11-23 17:00:48,991 | INFO     | current chi2=2.7943826139047214 (change=41.74983415935463 %)
[2025-11-23 18:14:01] 2025-11-23 17:00:48,992 | INFO     | sum of square deviations: 268383773182.48465
[2025-11-23 18:14:01] 2025-11-23 17:00:49,015 | INFO     | sum of deviations: 535643083137.2331
[2025-11-23 18:14:01] 2025-11-23 17:00:49,016 | INFO     | mean x: 1763888148.039874
[2025-11-23 18:14:01] 2025-11-23 17:00:49,016 | INFO     | mean y: 2276264.941238195
[2025-11-23 18:14:01] 2025-11-23 17:00:49,016 | INFO     | intersect: -3518109765.5617533
[2025-11-23 18:14:01] 2025-11-23 17:00:49,017 | INFO     | chi2: 2.7707413311585536
[2025-11-23 18:14:01] 2025-11-23 17:00:49,017 | INFO     | current chi2=2.7707413311585536 (change=0.8460288375875903 %)
[2025-11-23 18:14:01] 2025-11-23 17:00:49,017 | INFO     | left removable region: 20
[2025-11-23 18:14:01] 2025-11-23 17:00:49,018 | INFO     | sum of square deviations: 251029779421.4514
[2025-11-23 18:14:01] 2025-11-23 17:00:49,039 | INFO     | sum of deviations: 737192416719.5201
[2025-11-23 18:14:01] 2025-11-23 17:00:49,040 | INFO     | mean x: 1763888117.5407724
[2025-11-23 18:14:01] 2025-11-23 17:00:49,040 | INFO     | mean y: 2286961.9731759657
[2025-11-23 18:14:01] 2025-11-23 17:00:49,040 | INFO     | intersect: -5177675938.004617
[2025-11-23 18:14:01] 2025-11-23 17:00:49,041 | INFO     | chi2: 0.0601617862519295
[2025-11-23 18:14:01] 2025-11-23 17:00:49,041 | INFO     | current memory leak: 2.94 B/s (using 932 data points, chi2=0.06)
[2025-11-23 18:14:01] 2025-11-23 17:00:49,043 | INFO     | could have reported an average CPU frequency of 2704 MHz (36 samples)
[2025-11-23 18:14:01] 2025-11-23 17:00:49,043 | INFO     | ..............................
[2025-11-23 18:14:01] 2025-11-23 17:00:49,043 | INFO     | . Timing measurements:
[2025-11-23 18:14:01] 2025-11-23 17:00:49,043 | INFO     | . get job = 0 s
[2025-11-23 18:14:01] 2025-11-23 17:00:49,043 | INFO     | . initial setup = 1 s
[2025-11-23 18:14:01] 2025-11-23 17:00:49,043 | INFO     | . payload setup = 9 s
[2025-11-23 18:14:01] 2025-11-23 17:00:49,043 | INFO     | . stage-in = 0 s
[2025-11-23 18:14:01] 2025-11-23 17:00:49,044 | INFO     | . payload execution = 58736 s
[2025-11-23 18:14:01] 2025-11-23 17:00:49,044 | INFO     | . stage-out = 2 s
[2025-11-23 18:14:01] 2025-11-23 17:00:49,044 | INFO     | . log creation = 0 s
[2025-11-23 18:14:01] 2025-11-23 17:00:49,044 | INFO     | ..............................
[2025-11-23 18:14:01] 2025-11-23 17:00:49,146 | INFO     | 
[2025-11-23 18:14:01] 2025-11-23 17:00:49,146 | INFO     | job summary report
[2025-11-23 18:14:01] 2025-11-23 17:00:49,146 | INFO     | --------------------------------------------------
[2025-11-23 18:14:01] 2025-11-23 17:00:49,147 | INFO     | PanDA job id: 6893860992
[2025-11-23 18:14:01] 2025-11-23 17:00:49,147 | INFO     | task id: 47523449
[2025-11-23 18:14:01] 2025-11-23 17:00:49,147 | INFO     | errors: (none)
[2025-11-23 18:14:01] 2025-11-23 17:00:49,147 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 18:14:01] 2025-11-23 17:00:49,147 | INFO     | pilot state: finished 
[2025-11-23 18:14:01] 2025-11-23 17:00:49,147 | INFO     | transexitcode: 0
[2025-11-23 18:14:01] 2025-11-23 17:00:49,147 | INFO     | exeerrorcode: 0
[2025-11-23 18:14:01] 2025-11-23 17:00:49,147 | INFO     | exeerrordiag: 
[2025-11-23 18:14:01] 2025-11-23 17:00:49,147 | INFO     | exitcode: 0
[2025-11-23 18:14:01] 2025-11-23 17:00:49,147 | INFO     | exitmsg: OK
[2025-11-23 18:14:01] 2025-11-23 17:00:49,147 | INFO     | cpuconsumptiontime: 233674 s
[2025-11-23 18:14:01] 2025-11-23 17:00:49,147 | INFO     | nevents: 1000
[2025-11-23 18:14:01] 2025-11-23 17:00:49,147 | INFO     | neventsw: 0
[2025-11-23 18:14:01] 2025-11-23 17:00:49,147 | INFO     | pid: 1289145
[2025-11-23 18:14:01] 2025-11-23 17:00:49,147 | INFO     | pgrp: 1289145
[2025-11-23 18:14:01] 2025-11-23 17:00:49,148 | INFO     | corecount: 4
[2025-11-23 18:14:01] 2025-11-23 17:00:49,148 | INFO     | event service: False
[2025-11-23 18:14:01] 2025-11-23 17:00:49,148 | INFO     | sizes: {0: 2298812, 7: 2299074, 11: 2299102, 58750: 2353803, 58753: 2362821, 58756: 2362877, 58763: 2363251}
[2025-11-23 18:14:01] 2025-11-23 17:00:49,148 | INFO     | --------------------------------------------------
[2025-11-23 18:14:01] 2025-11-23 17:00:49,148 | INFO     | 
[2025-11-23 18:14:01] 2025-11-23 17:00:49,148 | INFO     | executing command: ls -lF /scratch/boinc/var/slot108/slots/0
[2025-11-23 18:14:01] 2025-11-23 17:00:49,211 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 18:14:01] 2025-11-23 17:00:49,211 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 18:14:01] 2025-11-23 17:00:49,211 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 18:14:01] 2025-11-23 17:00:49,211 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 18:14:01] 2025-11-23 17:00:49,212 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 18:14:01] 2025-11-23 17:00:49,212 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 18:14:01] 2025-11-23 17:00:49,212 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 18:14:01] 2025-11-23 17:00:49,212 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 18:14:01] 2025-11-23 17:00:49,212 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 18:14:01] 2025-11-23 17:00:49,212 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 18:14:01] 2025-11-23 17:00:49,212 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 18:14:01] 2025-11-23 17:00:49,212 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 18:14:01] 2025-11-23 17:00:49,212 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 18:14:01] 2025-11-23 17:00:49,212 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 18:14:01] 2025-11-23 17:00:49,213 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 18:14:01] 2025-11-23 17:00:49,213 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 18:14:01] 2025-11-23 17:00:49,213 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 18:14:01] 2025-11-23 17:00:49,213 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 18:14:01] 2025-11-23 17:00:49,213 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 18:14:01] 2025-11-23 17:00:49,213 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 18:14:01] 2025-11-23 17:00:49,213 | INFO     | job 6893860992 has completed (purged errors)
[2025-11-23 18:14:01] 2025-11-23 17:00:49,213 | INFO     | overall cleanup function is called
[2025-11-23 18:14:01] 2025-11-23 17:00:50,165 | INFO     | PID=1281007 has CPU usage=23.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-23 18:14:01] 2025-11-23 17:00:50,166 | INFO     | .. there are 12 such processes running
[2025-11-23 18:14:01] 2025-11-23 17:00:50,236 | INFO     | --- collectZombieJob: --- 10, [1289145]
[2025-11-23 18:14:01] 2025-11-23 17:00:50,237 | INFO     | zombie collector waiting for pid 1289145
[2025-11-23 18:14:01] 2025-11-23 17:00:50,237 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 18:14:01] 2025-11-23 17:00:50,237 | INFO     | collected zombie processes
[2025-11-23 18:14:01] 2025-11-23 17:00:50,237 | INFO     | will attempt to kill all subprocesses of pid=1289145
[2025-11-23 18:14:01] 2025-11-23 17:00:51,026 | INFO     | process IDs to be killed: [1289145] (in reverse order)
[2025-11-23 18:14:01] 2025-11-23 17:00:51,313 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 18:14:01] 2025-11-23 17:00:51,313 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 18:14:01] 2025-11-23 17:00:51,346 | INFO     | did not find any defunct processes belonging to 1289145
[2025-11-23 18:14:01] 2025-11-23 17:00:51,378 | INFO     | did not find any defunct processes belonging to 1289145
[2025-11-23 18:14:01] 2025-11-23 17:00:51,380 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 18:14:01] 2025-11-23 17:00:51,380 | INFO     | ready for new job
[2025-11-23 18:14:01] 2025-11-23 17:00:51,380 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 18:14:01] 2025-11-23 17:00:51,386 | INFO     | ***************************************
[2025-11-23 18:14:01] 2025-11-23 17:00:51,386 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 18:14:01] 2025-11-23 17:00:51,386 | INFO     | ***************************************
[2025-11-23 18:14:01] 2025-11-23 17:00:51,386 | INFO     | 
[2025-11-23 18:14:01] 2025-11-23 17:00:51,395 | INFO     | architecture information:
[2025-11-23 18:14:01] 2025-11-23 17:00:51,396 | INFO     | executing command: cat /etc/os-release
[2025-11-23 18:14:01] 2025-11-23 17:00:51,416 | INFO     | cat /etc/os-release:
[2025-11-23 18:14:01] NAME="CentOS Linux"
[2025-11-23 18:14:01] VERSION="7 (Core)"
[2025-11-23 18:14:01] ID="centos"
[2025-11-23 18:14:01] ID_LIKE="rhel fedora"
[2025-11-23 18:14:01] VERSION_ID="7"
[2025-11-23 18:14:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 18:14:01] ANSI_COLOR="0;31"
[2025-11-23 18:14:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 18:14:01] HOME_URL="https://www.centos.org/"
[2025-11-23 18:14:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 18:14:01] 
[2025-11-23 18:14:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 18:14:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 18:14:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 18:14:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 18:14:01] 
[2025-11-23 18:14:01] 2025-11-23 17:00:51,416 | INFO     | ***************************************
[2025-11-23 18:14:01] 2025-11-23 17:00:51,919 | INFO     | executing command: df -mP /scratch/boinc/var/slot108/slots/0
[2025-11-23 18:14:01] 2025-11-23 17:00:51,942 | INFO     | sufficient remaining disk space (3317104115712 B)
[2025-11-23 18:14:01] 2025-11-23 17:00:51,943 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 18:14:01] 2025-11-23 17:00:51,943 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 18:14:01] 2025-11-23 17:00:51,943 | INFO     | update_server=False
[2025-11-23 18:14:01] 2025-11-23 17:00:51,943 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 18:14:01] 2025-11-23 17:00:51,943 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 18:14:01] 2025-11-23 17:00:51,980 | INFO     | all job control threads have been joined
[2025-11-23 18:14:01] 2025-11-23 17:00:52,182 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 18:14:01] 2025-11-23 17:00:52,245 | INFO     | all payload control threads have been joined
[2025-11-23 18:14:01] 2025-11-23 17:00:52,447 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 18:14:01] 2025-11-23 17:00:52,447 | INFO     | aborting loop
[2025-11-23 18:14:01] 2025-11-23 17:00:52,571 | INFO     | all data control threads have been joined
[2025-11-23 18:14:01] 2025-11-23 17:00:52,948 | INFO     | [job] retrieve thread has finished
[2025-11-23 18:14:01] 2025-11-23 17:00:52,985 | INFO     | [job] control thread has finished
[2025-11-23 18:14:01] 2025-11-23 17:00:53,039 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 18:14:01] 2025-11-23 17:00:53,123 | INFO     | [payload] validate_post thread has finished
[2025-11-23 18:14:01] 2025-11-23 17:00:53,251 | INFO     | [payload] control thread has finished
[2025-11-23 18:14:01] 2025-11-23 17:00:53,321 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 18:14:01] 2025-11-23 17:00:53,434 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 18:14:01] 2025-11-23 17:00:53,452 | INFO     | [job] job monitor thread has finished
[2025-11-23 18:14:01] 2025-11-23 17:00:53,476 | INFO     | [payload] failed_post thread has finished
[2025-11-23 18:14:01] 2025-11-23 17:00:53,576 | INFO     | [data] control thread has finished
[2025-11-23 18:14:01] 2025-11-23 17:00:53,637 | INFO     | [data] copytool_in thread has finished
[2025-11-23 18:14:01] 2025-11-23 17:00:53,674 | INFO     | [job] validate thread has finished
[2025-11-23 18:14:01] 2025-11-23 17:00:53,949 | INFO     | [data] copytool_out thread has finished
[2025-11-23 18:14:01] 2025-11-23 17:00:54,157 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 18:14:01] 2025-11-23 17:00:55,162 | INFO     | [job] queue monitor thread has finished
[2025-11-23 18:14:01] 2025-11-23 17:00:56,187 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 18:14:01] 2025-11-23 17:01:02,867 | INFO     | job.realtimelogging is not enabled
[2025-11-23 18:14:01] 2025-11-23 17:01:03,872 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 18:14:01] 2025-11-23 17:01:23,174 | INFO     | PID=1281007 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 18:14:01] 2025-11-23 17:01:23,174 | INFO     | .. there are 12 such processes running
[2025-11-23 18:14:01] 2025-11-23 17:01:23,174 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 18:14:01] 2025-11-23 17:01:23,174 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 18:14:01] 2025-11-23 17:01:23,174 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 18:14:01] 2025-11-23 17:01:45,396 | INFO     | [monitor] cgroup control has ended
[2025-11-23 18:14:01] 2025-11-23 17:01:45,510 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22946528569152)>', '<ExcThread(monitor, started 22946275858176)>']
[2025-11-23 18:14:01] 2025-11-23 17:01:46,294 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 18:14:01] 2025-11-23 17:01:46,295 | INFO     | [monitor] control thread has ended
[2025-11-23 18:14:01] 2025-11-23 17:01:50,534 | INFO     | all workflow threads have been joined
[2025-11-23 18:14:01] 2025-11-23 17:01:50,535 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 18:14:01] 2025-11-23 17:01:50,535 | INFO     | traces error code: 0
[2025-11-23 18:14:01] 2025-11-23 17:01:50,535 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 18:14:01] 2025-11-23 17:01:50,682 [wrapper] ==== pilot stdout END ====
[2025-11-23 18:14:01] 2025-11-23 17:01:50,686 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 18:14:01] 2025-11-23 17:01:50,690 [wrapper] pilotpid: 1281007
[2025-11-23 18:14:01] 2025-11-23 17:01:50,692 [wrapper] Pilot exit status: 0
[2025-11-23 18:14:01] 2025-11-23 17:01:50,716 [wrapper] pandaids: 6893860992
[2025-11-23 18:14:01] 2025-11-23 17:01:50,896 [wrapper] cleanup supervisor_pilot 3068108 1281008
[2025-11-23 18:14:01] 2025-11-23 17:01:50,907 [wrapper] Test setup, not cleaning
[2025-11-23 18:14:01] 2025-11-23 17:01:50,911 [wrapper] apfmon messages muted
[2025-11-23 18:14:01] 2025-11-23 17:01:50,915 [wrapper] ==== wrapper stdout END ====
[2025-11-23 18:14:01] 2025-11-23 17:01:50,918 [wrapper] ==== wrapper stderr END ====
[2025-11-23 18:14:01]  *** Error codes and diagnostics ***
[2025-11-23 18:14:01]     "exeErrorCode": 0,
[2025-11-23 18:14:01]     "exeErrorDiag": "",
[2025-11-23 18:14:01]     "pilotErrorCode": 0,
[2025-11-23 18:14:01]     "pilotErrorDiag": "",
[2025-11-23 18:14:01]  *** Listing of results directory ***
[2025-11-23 18:14:01] total 1306108
[2025-11-23 18:14:01] -rwx------ 1 boinc boinc     36292 Nov 20 14:50 runpilot2-wrapper.sh
[2025-11-23 18:14:01] -rw-r--r-- 1 boinc boinc      5112 Nov 20 14:50 queuedata.json
[2025-11-23 18:14:01] -rw-r--r-- 1 boinc boinc    576529 Nov 20 14:50 pilot3.tar.gz
[2025-11-23 18:14:01] -rw-r--r-- 1 boinc boinc       100 Nov 23 01:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 18:14:01] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 01:40 run_atlas
[2025-11-23 18:14:01] -rw-r--r-- 1 boinc boinc       105 Nov 23 01:40 job.xml
[2025-11-23 18:14:01] -rw-r--r-- 2 boinc boinc 407254688 Nov 23 01:40 EVNT.47493127._000564.pool.root.1
[2025-11-23 18:14:01] -rw-r--r-- 1 boinc boinc      6687 Nov 23 01:40 init_data.xml
[2025-11-23 18:14:01] -rw-r--r-- 2 boinc boinc     15847 Nov 23 01:40 start_atlas.sh
[2025-11-23 18:14:01] drwxrwx--x 2 boinc boinc      4096 Nov 23 01:40 shared
[2025-11-23 18:14:01] -rw-r--r-- 2 boinc boinc    590094 Nov 23 01:40 input.tar.gz
[2025-11-23 18:14:01] -rw-r--r-- 1 boinc boinc         0 Nov 23 01:40 boinc_lockfile
[2025-11-23 18:14:01] -rw-r--r-- 1 boinc boinc      2782 Nov 23 01:40 pandaJob.out
[2025-11-23 18:14:01] -rw------- 1 boinc boinc    989784 Nov 23 01:41 agis_schedconf.cvmfs.json
[2025-11-23 18:14:01] drwx------ 5 boinc boinc      4096 Nov 23 01:41 pilot3
[2025-11-23 18:14:01] -rw-r--r-- 1 boinc boinc       532 Nov 23 17:52 boinc_task_state.xml
[2025-11-23 18:14:01] -rw------- 1 boinc boinc 906711986 Nov 23 17:59 HITS.47523449._005631.pool.root.1
[2025-11-23 18:14:01] -rw------- 1 boinc boinc      1039 Nov 23 18:00 memory_monitor_summary.json
[2025-11-23 18:14:01] -rw------- 1 boinc boinc   1526164 Nov 23 18:00 agis_ddmendpoints.agis.ALL.json
[2025-11-23 18:14:01] -rw------- 1 boinc boinc   1695906 Nov 23 18:00 log.47523449._005631.job.log.tgz.1
[2025-11-23 18:14:01] -rw------- 1 boinc boinc        95 Nov 23 18:00 pilot_heartbeat.json
[2025-11-23 18:14:01] -rw------- 1 boinc boinc      8600 Nov 23 18:00 heartbeat.json
[2025-11-23 18:14:01] -rw------- 1 boinc boinc      4908 Nov 23 18:01 pilotlog.txt
[2025-11-23 18:14:01] -rw------- 1 boinc boinc   8082117 Nov 23 18:01 log.47523449._005631.job.log.1
[2025-11-23 18:14:01] -rw------- 1 boinc boinc       353 Nov 23 18:01 output.list
[2025-11-23 18:14:01] -rw-r--r-- 1 boinc boinc       620 Nov 23 18:01 runtime_log
[2025-11-23 18:14:01] -rw------- 1 boinc boinc   9799680 Nov 23 18:01 result.tar.gz
[2025-11-23 18:14:01] -rw-r--r-- 1 boinc boinc      9223 Nov 23 18:01 runtime_log.err
[2025-11-23 18:14:01] -rw------- 1 boinc boinc       671 Nov 23 18:01 F4vNDmAEKg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmfkGKDmJalHNm.diag
[2025-11-23 18:14:01] -rw-r--r-- 1 boinc boinc        28 Nov 23 18:14 wrapper_checkpoint.txt
[2025-11-23 18:14:01] -rw-r--r-- 1 boinc boinc      8192 Nov 23 18:14 boinc_mmap_file
[2025-11-23 18:14:01] -rw-r--r-- 1 boinc boinc     21173 Nov 23 18:14 stderr.txt
[2025-11-23 18:14:01] HITS file was successfully produced:
[2025-11-23 18:14:01] -rw------- 1 boinc boinc 906711986 Nov 23 17:59 shared/HITS.pool.root.1
[2025-11-23 18:14:01]  *** Contents of shared directory: ***
[2025-11-23 18:14:01] total 1293352
[2025-11-23 18:14:01] -rw-r--r-- 2 boinc boinc 407254688 Nov 23 01:40 ATLAS.root_0
[2025-11-23 18:14:01] -rw-r--r-- 2 boinc boinc     15847 Nov 23 01:40 start_atlas.sh
[2025-11-23 18:14:01] -rw-r--r-- 2 boinc boinc    590094 Nov 23 01:40 input.tar.gz
[2025-11-23 18:14:01] -rw------- 1 boinc boinc 906711986 Nov 23 17:59 HITS.pool.root.1
[2025-11-23 18:14:01] -rw------- 1 boinc boinc   9799680 Nov 23 18:01 result.tar.gz
18:14:02 (1276633): run_atlas exited; CPU time 236415.160993
18:14:02 (1276633): called boinc_finish(0)

</stderr_txt>
]]>

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