Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:31:27 (2998088): wrapper (7.7.26015): starting
00:31:27 (2998088): wrapper: running run_atlas (--nthreads 3)
[2025-11-21 00:31:27] Arguments: --nthreads 3
[2025-11-21 00:31:27] Threads: 3
[2025-11-21 00:31:27] Checking for CVMFS
[2025-11-21 00:31:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 00:31:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 00:31:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 00:31:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 00:31:28] 2.9.2.0 16720 638 67200 153101 2 88 34437113 36864000 0 130560 0 8958018 99.999 13903 606 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 00:31:28] CVMFS is ok
[2025-11-21 00:31:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:31:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:31:28] Further information can be found at the LHC@home message board.
[2025-11-21 00:31:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:31:28] Checking for apptainer binary...
[2025-11-21 00:31:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 00:31:28] Running /usr/bin/apptainer --version
[2025-11-21 00:31:28] apptainer version 1.4.1-1.1
[2025-11-21 00:31:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:31:28] thA335
[2025-11-21 00:31:28] apptainer works
[2025-11-21 00:31:28] Set ATHENA_PROC_NUMBER=3
[2025-11-21 00:31:28] Set ATHENA_CORE_NUMBER=3
[2025-11-21 00:31:28] Starting ATLAS job with PandaID=6893860993
[2025-11-21 00:31:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 00:35:45]  *** The last 200 lines of the pilot log: ***
[2025-11-21 00:35:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 00:35:45] ANSI_COLOR="0;31"
[2025-11-21 00:35:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 00:35:45] HOME_URL="https://www.centos.org/"
[2025-11-21 00:35:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 00:35:45] 
[2025-11-21 00:35:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 00:35:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 00:35:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 00:35:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 00:35:45] 
[2025-11-21 00:35:45] 2025-11-20 23:34:53,180 | INFO     | ***************************************
[2025-11-21 00:35:45] 2025-11-20 23:34:53,684 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-21 00:35:45] 2025-11-20 23:34:53,697 | INFO     | sufficient remaining disk space (827211120640 B)
[2025-11-21 00:35:45] 2025-11-20 23:34:53,697 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 00:35:45] 2025-11-20 23:34:53,697 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 00:35:45] 2025-11-20 23:34:53,697 | INFO     | update_server=False
[2025-11-21 00:35:45] 2025-11-20 23:34:53,697 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 00:35:45] 2025-11-20 23:34:53,698 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 00:35:45] 2025-11-20 23:34:53,698 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 00:35:45] 2025-11-20 23:34:53,856 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-21 00:35:45] 2025-11-20 23:34:53,857 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-21 00:35:45] 2025-11-20 23:34:53,857 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 00:35:45] 2025-11-20 23:34:53,857 | INFO     | will abort loop
[2025-11-21 00:35:45] 2025-11-20 23:34:54,063 | INFO     | all data control threads have been joined
[2025-11-21 00:35:45] 2025-11-20 23:34:54,367 | INFO     | all payload control threads have been joined
[2025-11-21 00:35:45] 2025-11-20 23:34:54,702 | INFO     | [job] queue monitor thread has finished
[2025-11-21 00:35:45] 2025-11-20 23:34:54,703 | INFO     | [job] retrieve thread has finished
[2025-11-21 00:35:45] 2025-11-20 23:34:54,861 | INFO     | [job] job monitor thread has finished
[2025-11-21 00:35:45] 2025-11-20 23:34:54,871 | INFO     | all job control threads have been joined
[2025-11-21 00:35:45] 2025-11-20 23:34:54,999 | INFO     | [payload] validate_post thread has finished
[2025-11-21 00:35:45] 2025-11-20 23:34:55,063 | INFO     | [data] copytool_in thread has finished
[2025-11-21 00:35:45] 2025-11-20 23:34:55,068 | INFO     | [data] control thread has finished
[2025-11-21 00:35:45] 2025-11-20 23:34:55,276 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 00:35:45] 2025-11-20 23:34:55,358 | INFO     | [job] validate thread has finished
[2025-11-21 00:35:45] 2025-11-20 23:34:55,373 | INFO     | [payload] control thread has finished
[2025-11-21 00:35:45] 2025-11-20 23:34:55,445 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 00:35:45] 2025-11-20 23:34:55,493 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 00:35:45] 2025-11-20 23:34:55,695 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 00:35:45] 2025-11-20 23:34:55,704 | INFO     | [data] copytool_out thread has finished
[2025-11-21 00:35:45] 2025-11-20 23:34:55,877 | INFO     | [job] control thread has finished
[2025-11-21 00:35:45] 2025-11-20 23:34:56,054 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 00:35:45] 2025-11-20 23:34:56,073 | INFO     | [payload] failed_post thread has finished
[2025-11-21 00:35:45] 2025-11-20 23:35:00,061 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 00:35:45] 2025-11-20 23:35:23,504 | INFO     | PID=3001827 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 00:35:45] 2025-11-20 23:35:23,504 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 00:35:45] 2025-11-20 23:35:23,504 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 00:35:45] 2025-11-20 23:35:23,504 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 00:35:45] 2025-11-20 23:35:38,700 | INFO     | [monitor] cgroup control has ended
[2025-11-21 00:35:45] 2025-11-20 23:35:39,927 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140203679049536)>', '<ExcThread(monitor, started 140203318548224)>']
[2025-11-21 00:35:45] 2025-11-20 23:35:40,590 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 00:35:45] 2025-11-20 23:35:40,591 | INFO     | [monitor] control thread has ended
[2025-11-21 00:35:45] 2025-11-20 23:35:44,953 | INFO     | all workflow threads have been joined
[2025-11-21 00:35:45] 2025-11-20 23:35:44,954 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 00:35:45] 2025-11-20 23:35:44,954 | INFO     | traces error code: 0
[2025-11-21 00:35:45] 2025-11-20 23:35:44,955 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 00:35:45] 2025-11-20 23:35:45,002 [wrapper] ==== pilot stdout END ====
[2025-11-21 00:35:45] 2025-11-20 23:35:45,005 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 00:35:45] 2025-11-20 23:35:45,008 [wrapper] pilotpid: 3001827
[2025-11-21 00:35:45] 2025-11-20 23:35:45,011 [wrapper] Pilot exit status: 0
[2025-11-21 00:35:45] 2025-11-20 23:35:45,018 [wrapper] pandaids: 6893860993
[2025-11-21 00:35:45] 2025-11-20 23:35:45,035 [wrapper] cleanup supervisor_pilot 3001833 3001828
[2025-11-21 00:35:45] 2025-11-20 23:35:45,038 [wrapper] Test setup, not cleaning
[2025-11-21 00:35:45] 2025-11-20 23:35:45,041 [wrapper] apfmon messages muted
[2025-11-21 00:35:45] 2025-11-20 23:35:45,044 [wrapper] ==== wrapper stdout END ====
[2025-11-21 00:35:45] 2025-11-20 23:35:45,046 [wrapper] ==== wrapper stderr END ====
[2025-11-21 00:35:45]  *** Error codes and diagnostics ***
[2025-11-21 00:35:45]     "exeErrorCode": 65,
[2025-11-21 00:35:45]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 00:35:45]     "pilotErrorCode": 1305,
[2025-11-21 00:35:45]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 00:35:45]  *** Listing of results directory ***
[2025-11-21 00:35:45] total 401808
[2025-11-21 00:35:45] -rw-r--r-- 1 boinc boinc    576529 Nov 20 14:50 pilot3.tar.gz
[2025-11-21 00:35:45] -rwx------ 1 boinc boinc     36292 Nov 20 14:53 runpilot2-wrapper.sh
[2025-11-21 00:35:45] -rw-r--r-- 1 boinc boinc      5112 Nov 20 14:53 queuedata.json
[2025-11-21 00:35:45] -rw-r--r-- 1 boinc boinc       100 Nov 21 00:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 00:35:45] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 00:31 run_atlas
[2025-11-21 00:35:45] -rw-r--r-- 1 boinc boinc       105 Nov 21 00:31 job.xml
[2025-11-21 00:35:45] -rw-r--r-- 2 boinc boinc 407254688 Nov 21 00:31 EVNT.47493127._000564.pool.root.1
[2025-11-21 00:35:45] -rw-r--r-- 2 boinc boinc    590098 Nov 21 00:31 input.tar.gz
[2025-11-21 00:35:45] -rw-r--r-- 2 boinc boinc     15847 Nov 21 00:31 start_atlas.sh
[2025-11-21 00:35:45] drwxrwx--x 2 boinc boinc      4096 Nov 21 00:31 shared
[2025-11-21 00:35:45] -rw-r--r-- 1 boinc boinc         0 Nov 21 00:31 boinc_setup_complete
[2025-11-21 00:35:45] -rw-r--r-- 1 boinc boinc      6194 Nov 21 00:31 init_data.xml
[2025-11-21 00:35:45] -rw-r--r-- 1 boinc boinc         0 Nov 21 00:31 boinc_lockfile
[2025-11-21 00:35:45] -rw-r--r-- 1 boinc boinc      2785 Nov 21 00:31 pandaJob.out
[2025-11-21 00:35:45] -rw------- 1 boinc boinc    989817 Nov 21 00:31 agis_schedconf.cvmfs.json
[2025-11-21 00:35:45] -rw------- 1 boinc boinc   1526164 Nov 21 00:31 agis_ddmendpoints.agis.ALL.json
[2025-11-21 00:35:45] drwx------ 5 boinc boinc      4096 Nov 21 00:31 pilot3
[2025-11-21 00:35:45] -rw-r--r-- 1 boinc boinc       522 Nov 21 00:32 boinc_task_state.xml
[2025-11-21 00:35:45] -rw------- 1 boinc boinc       954 Nov 21 00:32 memory_monitor_summary.json
[2025-11-21 00:35:45] -rw------- 1 boinc boinc     55962 Nov 21 00:32 log.47523449._005632.job.log.tgz.1
[2025-11-21 00:35:45] -rw------- 1 boinc boinc        95 Nov 21 00:34 pilot_heartbeat.json
[2025-11-21 00:35:45] -rw------- 1 boinc boinc      8384 Nov 21 00:34 heartbeat.json
[2025-11-21 00:35:45] -rw-r--r-- 1 boinc boinc        22 Nov 21 00:35 wrapper_checkpoint.txt
[2025-11-21 00:35:45] -rw-r--r-- 1 boinc boinc      8192 Nov 21 00:35 boinc_mmap_file
[2025-11-21 00:35:45] -rw------- 1 boinc boinc      4938 Nov 21 00:35 pilotlog.txt
[2025-11-21 00:35:45] -rw------- 1 boinc boinc     92424 Nov 21 00:35 log.47523449._005632.job.log.1
[2025-11-21 00:35:45] -rw------- 1 boinc boinc       186 Nov 21 00:35 output.list
[2025-11-21 00:35:45] -rw-r--r-- 1 boinc boinc       620 Nov 21 00:35 runtime_log
[2025-11-21 00:35:45] -rw------- 1 boinc boinc    163840 Nov 21 00:35 result.tar.gz
[2025-11-21 00:35:45] -rw-r--r-- 1 boinc boinc      8744 Nov 21 00:35 runtime_log.err
[2025-11-21 00:35:45] -rw------- 1 boinc boinc       649 Nov 21 00:35 nnOLDmKHKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmD0HKDm9edeem.diag
[2025-11-21 00:35:45] -rw-r--r-- 1 boinc boinc      9110 Nov 21 00:35 stderr.txt
[2025-11-21 00:35:45] No HITS result produced
[2025-11-21 00:35:45]  *** Contents of shared directory: ***
[2025-11-21 00:35:45] total 398472
[2025-11-21 00:35:45] -rw-r--r-- 2 boinc boinc 407254688 Nov 21 00:31 ATLAS.root_0
[2025-11-21 00:35:45] -rw-r--r-- 2 boinc boinc    590098 Nov 21 00:31 input.tar.gz
[2025-11-21 00:35:45] -rw-r--r-- 2 boinc boinc     15847 Nov 21 00:31 start_atlas.sh
[2025-11-21 00:35:45] -rw------- 1 boinc boinc    163840 Nov 21 00:35 result.tar.gz
00:35:46 (2998088): run_atlas exited; CPU time 30.630048
00:35:46 (2998088): called boinc_finish(0)

</stderr_txt>
]]>

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