Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:10:19 (2347361): wrapper (7.7.26015): starting
01:10:19 (2347361): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 01:10:19] Arguments: --nthreads 4
[2025-11-21 01:10:19] Threads: 4
[2025-11-21 01:10:19] Checking for CVMFS
[2025-11-21 01:10:19] No cvmfs_config command found, will try listing directly
[2025-11-21 01:10:19] CVMFS is ok
[2025-11-21 01:10:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 01:10:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 01:10:19] Further information can be found at the LHC@home message board.
[2025-11-21 01:10:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 01:10:19] Checking for apptainer binary...
[2025-11-21 01:10:19] which: no apptainer in ((null))
[2025-11-21 01:10:19] apptainer is not installed, using version from CVMFS
[2025-11-21 01:10:19] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 01:10:20] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot48/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut07.grid.cesnet.cz
[2025-11-21 01:10:20] apptainer works
[2025-11-21 01:10:20] Set ATHENA_PROC_NUMBER=4
[2025-11-21 01:10:20] Set ATHENA_CORE_NUMBER=4
[2025-11-21 01:10:20] Starting ATLAS job with PandaID=6893860376
[2025-11-21 01:10:20] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot48/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 19:42:05]  *** The last 200 lines of the pilot log: ***
[2025-11-21 19:42:05] 2025-11-21 18:37:45,267 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 19:42:05] 2025-11-21 18:37:45,272 | INFO     | time since job start (66434s) is within the limit (172800.0s)
[2025-11-21 19:42:05] 2025-11-21 18:37:45,454 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-21 19:42:05] 2025-11-21 18:37:45,464 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2515.1292968750004
[2025-11-21 19:42:05] 2025-11-21 18:37:45,478 | INFO     | using path: /scratch/boinc/var/slot48/slots/1/PanDA_Pilot-6893860376/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 19:42:05] 2025-11-21 18:37:45,479 | INFO     | extracted standard info from prmon json
[2025-11-21 19:42:05] 2025-11-21 18:37:45,479 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 19:42:05] 2025-11-21 18:37:45,479 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 19:42:05] 2025-11-21 18:37:45,500 | INFO     | fitting pss+swap vs Time
[2025-11-21 19:42:05] 2025-11-21 18:37:45,502 | INFO     | sum of square deviations: 400462567938.92395
[2025-11-21 19:42:05] 2025-11-21 18:37:45,528 | INFO     | sum of deviations: 945243401040.7943
[2025-11-21 19:42:05] 2025-11-21 18:37:45,529 | INFO     | mean x: 1763717045.0082645
[2025-11-21 19:42:05] 2025-11-21 18:37:45,529 | INFO     | mean y: 2281491.134067952
[2025-11-21 19:42:05] 2025-11-21 18:37:45,529 | INFO     | intersect: -4160759031.4235706
[2025-11-21 19:42:05] 2025-11-21 18:37:45,530 | INFO     | chi2: 4.6986405753528455
[2025-11-21 19:42:05] 2025-11-21 18:37:45,532 | INFO     | sum of square deviations: 394971844478.92505
[2025-11-21 19:42:05] 2025-11-21 18:37:45,559 | INFO     | sum of deviations: 1189396782959.3804
[2025-11-21 19:42:05] 2025-11-21 18:37:45,560 | INFO     | mean x: 1763716892.5083027
[2025-11-21 19:42:05] 2025-11-21 18:37:45,560 | INFO     | mean y: 2288267.679889299
[2025-11-21 19:42:05] 2025-11-21 18:37:45,560 | INFO     | intersect: -5308873090.58858
[2025-11-21 19:42:05] 2025-11-21 18:37:45,561 | INFO     | chi2: 2.2654060502813373
[2025-11-21 19:42:05] 2025-11-21 18:37:45,562 | INFO     | current chi2=2.2654060502813373 (change=51.78592586620192 %)
[2025-11-21 19:42:05] 2025-11-21 18:37:45,563 | INFO     | sum of square deviations: 389531540568.92487
[2025-11-21 19:42:05] 2025-11-21 18:37:45,589 | INFO     | sum of deviations: 1229655565548.4822
[2025-11-21 19:42:05] 2025-11-21 18:37:45,590 | INFO     | mean x: 1763716740.008341
[2025-11-21 19:42:05] 2025-11-21 18:37:45,590 | INFO     | mean y: 2289393.1686746986
[2025-11-21 19:42:05] 2025-11-21 18:37:45,590 | INFO     | intersect: -5565331914.812507
[2025-11-21 19:42:05] 2025-11-21 18:37:45,591 | INFO     | chi2: 2.102094393524483
[2025-11-21 19:42:05] 2025-11-21 18:37:45,592 | INFO     | current chi2=2.102094393524483 (change=7.2089353136746945 %)
[2025-11-21 19:42:05] 2025-11-21 18:37:45,592 | INFO     | right removable region: 1078
[2025-11-21 19:42:05] 2025-11-21 18:37:45,593 | INFO     | sum of square deviations: 394971838988.925
[2025-11-21 19:42:05] 2025-11-21 18:37:45,620 | INFO     | sum of deviations: 731267059379.8604
[2025-11-21 19:42:05] 2025-11-21 18:37:45,621 | INFO     | mean x: 1763717197.5083027
[2025-11-21 19:42:05] 2025-11-21 18:37:45,621 | INFO     | mean y: 2287426.348708487
[2025-11-21 19:42:05] 2025-11-21 18:37:45,621 | INFO     | intersect: -3263130918.162049
[2025-11-21 19:42:05] 2025-11-21 18:37:45,622 | INFO     | chi2: 2.7441454857319076
[2025-11-21 19:42:05] 2025-11-21 18:37:45,622 | INFO     | current chi2=2.7441454857319076 (change=41.59703340309584 %)
[2025-11-21 19:42:05] 2025-11-21 18:37:45,624 | INFO     | sum of square deviations: 389531529588.9248
[2025-11-21 19:42:05] 2025-11-21 18:37:45,651 | INFO     | sum of deviations: 685019431860.0818
[2025-11-21 19:42:05] 2025-11-21 18:37:45,651 | INFO     | mean x: 1763717350.008341
[2025-11-21 19:42:05] 2025-11-21 18:37:45,651 | INFO     | mean y: 2288722.2131603337
[2025-11-21 19:42:05] 2025-11-21 18:37:45,652 | INFO     | intersect: -3099336089.3636684
[2025-11-21 19:42:05] 2025-11-21 18:37:45,653 | INFO     | chi2: 2.697798544255452
[2025-11-21 19:42:05] 2025-11-21 18:37:45,653 | INFO     | current chi2=2.697798544255452 (change=1.6889389326271165 %)
[2025-11-21 19:42:05] 2025-11-21 18:37:45,653 | INFO     | left removable region: 20
[2025-11-21 19:42:05] 2025-11-21 18:37:45,655 | INFO     | sum of square deviations: 367227575202.4235
[2025-11-21 19:42:05] 2025-11-21 18:37:45,680 | INFO     | sum of deviations: 904514321232.2719
[2025-11-21 19:42:05] 2025-11-21 18:37:45,680 | INFO     | mean x: 1763717319.5085065
[2025-11-21 19:42:05] 2025-11-21 18:37:45,680 | INFO     | mean y: 2298529.9697542535
[2025-11-21 19:42:05] 2025-11-21 18:37:45,680 | INFO     | intersect: -4341894776.378419
[2025-11-21 19:42:05] 2025-11-21 18:37:45,682 | INFO     | chi2: 0.0656508631077453
[2025-11-21 19:42:05] 2025-11-21 18:37:45,682 | INFO     | current memory leak: 2.46 B/s (using 1058 data points, chi2=0.07)
[2025-11-21 19:42:05] 2025-11-21 18:37:45,683 | INFO     | could have reported an average CPU frequency of 2542 MHz (40 samples)
[2025-11-21 19:42:05] 2025-11-21 18:37:45,684 | INFO     | ..............................
[2025-11-21 19:42:05] 2025-11-21 18:37:45,684 | INFO     | . Timing measurements:
[2025-11-21 19:42:05] 2025-11-21 18:37:45,684 | INFO     | . get job = 0 s
[2025-11-21 19:42:05] 2025-11-21 18:37:45,684 | INFO     | . initial setup = 1 s
[2025-11-21 19:42:05] 2025-11-21 18:37:45,684 | INFO     | . payload setup = 7 s
[2025-11-21 19:42:05] 2025-11-21 18:37:45,684 | INFO     | . stage-in = 0 s
[2025-11-21 19:42:05] 2025-11-21 18:37:45,684 | INFO     | . payload execution = 66397 s
[2025-11-21 19:42:05] 2025-11-21 18:37:45,684 | INFO     | . stage-out = 2 s
[2025-11-21 19:42:05] 2025-11-21 18:37:45,684 | INFO     | . log creation = 0 s
[2025-11-21 19:42:05] 2025-11-21 18:37:45,684 | INFO     | ..............................
[2025-11-21 19:42:05] 2025-11-21 18:37:46,240 | INFO     | 
[2025-11-21 19:42:05] 2025-11-21 18:37:46,241 | INFO     | job summary report
[2025-11-21 19:42:05] 2025-11-21 18:37:46,241 | INFO     | --------------------------------------------------
[2025-11-21 19:42:05] 2025-11-21 18:37:46,241 | INFO     | PanDA job id: 6893860376
[2025-11-21 19:42:05] 2025-11-21 18:37:46,241 | INFO     | task id: 47523449
[2025-11-21 19:42:05] 2025-11-21 18:37:46,241 | INFO     | errors: (none)
[2025-11-21 19:42:05] 2025-11-21 18:37:46,241 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 19:42:05] 2025-11-21 18:37:46,241 | INFO     | pilot state: finished 
[2025-11-21 19:42:05] 2025-11-21 18:37:46,241 | INFO     | transexitcode: 0
[2025-11-21 19:42:05] 2025-11-21 18:37:46,242 | INFO     | exeerrorcode: 0
[2025-11-21 19:42:05] 2025-11-21 18:37:46,242 | INFO     | exeerrordiag: 
[2025-11-21 19:42:05] 2025-11-21 18:37:46,242 | INFO     | exitcode: 0
[2025-11-21 19:42:05] 2025-11-21 18:37:46,242 | INFO     | exitmsg: OK
[2025-11-21 19:42:05] 2025-11-21 18:37:46,242 | INFO     | cpuconsumptiontime: 261619 s
[2025-11-21 19:42:05] 2025-11-21 18:37:46,242 | INFO     | nevents: 1000
[2025-11-21 19:42:05] 2025-11-21 18:37:46,242 | INFO     | neventsw: 0
[2025-11-21 19:42:05] 2025-11-21 18:37:46,242 | INFO     | pid: 2358050
[2025-11-21 19:42:05] 2025-11-21 18:37:46,242 | INFO     | pgrp: 2358050
[2025-11-21 19:42:05] 2025-11-21 18:37:46,242 | INFO     | corecount: 4
[2025-11-21 19:42:05] 2025-11-21 18:37:46,242 | INFO     | event service: False
[2025-11-21 19:42:05] 2025-11-21 18:37:46,242 | INFO     | sizes: {0: 2298596, 1: 2298795, 6: 2299057, 12: 2299085, 66408: 2354318, 66412: 2363518, 66418: 2363708}
[2025-11-21 19:42:05] 2025-11-21 18:37:46,243 | INFO     | --------------------------------------------------
[2025-11-21 19:42:05] 2025-11-21 18:37:46,243 | INFO     | 
[2025-11-21 19:42:05] 2025-11-21 18:37:46,243 | INFO     | executing command: ls -lF /scratch/boinc/var/slot48/slots/1
[2025-11-21 19:42:05] 2025-11-21 18:37:46,264 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 19:42:05] 2025-11-21 18:37:46,265 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 19:42:05] 2025-11-21 18:37:46,265 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 19:42:05] 2025-11-21 18:37:46,265 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 19:42:05] 2025-11-21 18:37:46,265 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 19:42:05] 2025-11-21 18:37:46,265 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 19:42:05] 2025-11-21 18:37:46,265 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 19:42:05] 2025-11-21 18:37:46,265 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 19:42:05] 2025-11-21 18:37:46,266 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 19:42:05] 2025-11-21 18:37:46,266 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 19:42:05] 2025-11-21 18:37:46,266 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 19:42:05] 2025-11-21 18:37:46,266 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 19:42:05] 2025-11-21 18:37:46,266 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 19:42:05] 2025-11-21 18:37:46,266 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 19:42:05] 2025-11-21 18:37:46,266 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 19:42:05] 2025-11-21 18:37:46,266 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 19:42:05] 2025-11-21 18:37:46,266 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 19:42:05] 2025-11-21 18:37:46,266 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 19:42:05] 2025-11-21 18:37:46,266 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 19:42:05] 2025-11-21 18:37:46,267 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 19:42:05] 2025-11-21 18:37:46,267 | INFO     | job 6893860376 has completed (purged errors)
[2025-11-21 19:42:05] 2025-11-21 18:37:46,267 | INFO     | overall cleanup function is called
[2025-11-21 19:42:05] 2025-11-21 18:37:47,280 | INFO     | --- collectZombieJob: --- 10, [2358050]
[2025-11-21 19:42:05] 2025-11-21 18:37:47,280 | INFO     | zombie collector waiting for pid 2358050
[2025-11-21 19:42:05] 2025-11-21 18:37:47,280 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 19:42:05] 2025-11-21 18:37:47,280 | INFO     | collected zombie processes
[2025-11-21 19:42:05] 2025-11-21 18:37:47,280 | INFO     | will attempt to kill all subprocesses of pid=2358050
[2025-11-21 19:42:05] 2025-11-21 18:37:47,704 | INFO     | process IDs to be killed: [2358050] (in reverse order)
[2025-11-21 19:42:05] 2025-11-21 18:37:47,826 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 19:42:05] 2025-11-21 18:37:47,827 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 19:42:05] 2025-11-21 18:37:47,841 | INFO     | did not find any defunct processes belonging to 2358050
[2025-11-21 19:42:05] 2025-11-21 18:37:47,854 | INFO     | did not find any defunct processes belonging to 2358050
[2025-11-21 19:42:05] 2025-11-21 18:37:47,856 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 19:42:05] 2025-11-21 18:37:47,856 | INFO     | ready for new job
[2025-11-21 19:42:05] 2025-11-21 18:37:47,856 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 19:42:05] 2025-11-21 18:37:47,863 | INFO     | ***************************************
[2025-11-21 19:42:05] 2025-11-21 18:37:47,863 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 19:42:05] 2025-11-21 18:37:47,863 | INFO     | ***************************************
[2025-11-21 19:42:05] 2025-11-21 18:37:47,863 | INFO     | 
[2025-11-21 19:42:05] 2025-11-21 18:37:47,867 | INFO     | architecture information:
[2025-11-21 19:42:05] 2025-11-21 18:37:47,868 | INFO     | executing command: cat /etc/os-release
[2025-11-21 19:42:05] 2025-11-21 18:37:47,884 | INFO     | cat /etc/os-release:
[2025-11-21 19:42:05] NAME="CentOS Linux"
[2025-11-21 19:42:05] VERSION="7 (Core)"
[2025-11-21 19:42:05] ID="centos"
[2025-11-21 19:42:05] ID_LIKE="rhel fedora"
[2025-11-21 19:42:05] VERSION_ID="7"
[2025-11-21 19:42:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 19:42:05] ANSI_COLOR="0;31"
[2025-11-21 19:42:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 19:42:05] HOME_URL="https://www.centos.org/"
[2025-11-21 19:42:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 19:42:05] 
[2025-11-21 19:42:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 19:42:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 19:42:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 19:42:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 19:42:05] 
[2025-11-21 19:42:05] 2025-11-21 18:37:47,884 | INFO     | ***************************************
[2025-11-21 19:42:05] 2025-11-21 18:37:48,387 | INFO     | executing command: df -mP /scratch/boinc/var/slot48/slots/1
[2025-11-21 19:42:05] 2025-11-21 18:37:48,404 | INFO     | sufficient remaining disk space (668038332416 B)
[2025-11-21 19:42:05] 2025-11-21 18:37:48,405 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 19:42:05] 2025-11-21 18:37:48,405 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 19:42:05] 2025-11-21 18:37:48,405 | INFO     | update_server=False
[2025-11-21 19:42:05] 2025-11-21 18:37:48,405 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 19:42:05] 2025-11-21 18:37:48,405 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 19:42:05] 2025-11-21 18:37:48,775 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 19:42:05] 2025-11-21 18:37:48,775 | INFO     | aborting loop
[2025-11-21 19:42:05] 2025-11-21 18:37:49,411 | INFO     | [job] retrieve thread has finished
[2025-11-21 19:42:05] 2025-11-21 18:37:49,412 | INFO     | [job] validate thread has finished
[2025-11-21 19:42:05] 2025-11-21 18:37:49,491 | INFO     | all data control threads have been joined
[2025-11-21 19:42:05] 2025-11-21 18:37:49,757 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 19:42:05] 2025-11-21 18:37:49,780 | INFO     | [job] job monitor thread has finished
[2025-11-21 19:42:05] 2025-11-21 18:37:49,908 | INFO     | all payload control threads have been joined
[2025-11-21 19:42:05] 2025-11-21 18:37:50,000 | INFO     | all job control threads have been joined
[2025-11-21 19:42:05] 2025-11-21 18:37:50,051 | INFO     | [payload] validate_post thread has finished
[2025-11-21 19:42:05] 2025-11-21 18:37:50,118 | INFO     | [payload] failed_post thread has finished
[2025-11-21 19:42:05] 2025-11-21 18:37:50,411 | INFO     | [data] copytool_out thread has finished
[2025-11-21 19:42:05] 2025-11-21 18:37:50,498 | INFO     | [data] control thread has finished
[2025-11-21 19:42:05] 2025-11-21 18:37:50,594 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 19:42:05] 2025-11-21 18:37:50,661 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 19:42:05] 2025-11-21 18:37:50,802 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 19:42:05] 2025-11-21 18:37:50,812 | INFO     | [data] copytool_in thread has finished
[2025-11-21 19:42:05] 2025-11-21 18:37:50,818 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 19:42:05] 2025-11-21 18:37:50,912 | INFO     | [payload] control thread has finished
[2025-11-21 19:42:05] 2025-11-21 18:37:51,005 | INFO     | [job] control thread has finished
[2025-11-21 19:42:05] 2025-11-21 18:37:51,808 | INFO     | [job] queue monitor thread has finished
[2025-11-21 19:42:05] 2025-11-21 18:37:54,600 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 19:42:05] 2025-11-21 18:37:59,143 | INFO     | job.realtimelogging is not enabled
[2025-11-21 19:42:05] 2025-11-21 18:38:00,149 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 19:42:05] 2025-11-21 18:38:18,887 | INFO     | PID=2351119 has CPU usage=11.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-21 19:42:05] 2025-11-21 18:38:18,887 | INFO     | .. there are 4 such processes running
[2025-11-21 19:42:05] 2025-11-21 18:38:18,887 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 19:42:05] 2025-11-21 18:38:18,887 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 19:42:05] 2025-11-21 18:38:18,887 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 19:42:05] 2025-11-21 18:38:21,288 | INFO     | [monitor] cgroup control has ended
[2025-11-21 19:42:05] 2025-11-21 18:38:21,605 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23157936772928)>', '<ExcThread(monitor, started 23157700265728)>']
[2025-11-21 19:42:05] 2025-11-21 18:38:21,901 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 19:42:05] 2025-11-21 18:38:21,902 | INFO     | [monitor] control thread has ended
[2025-11-21 19:42:05] 2025-11-21 18:38:26,614 | INFO     | all workflow threads have been joined
[2025-11-21 19:42:05] 2025-11-21 18:38:26,614 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 19:42:05] 2025-11-21 18:38:26,615 | INFO     | traces error code: 0
[2025-11-21 19:42:05] 2025-11-21 18:38:26,615 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 19:42:05] 2025-11-21 18:38:26,787 [wrapper] ==== pilot stdout END ====
[2025-11-21 19:42:05] 2025-11-21 18:38:26,789 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 19:42:05] 2025-11-21 18:38:26,792 [wrapper] pilotpid: 2351119
[2025-11-21 19:42:05] 2025-11-21 18:38:26,794 [wrapper] Pilot exit status: 0
[2025-11-21 19:42:05] 2025-11-21 18:38:26,803 [wrapper] pandaids: 6893860376
[2025-11-21 19:42:05] 2025-11-21 18:38:26,884 [wrapper] cleanup supervisor_pilot 3374305 2351120
[2025-11-21 19:42:05] 2025-11-21 18:38:26,888 [wrapper] Test setup, not cleaning
[2025-11-21 19:42:05] 2025-11-21 18:38:26,890 [wrapper] apfmon messages muted
[2025-11-21 19:42:05] 2025-11-21 18:38:26,893 [wrapper] ==== wrapper stdout END ====
[2025-11-21 19:42:05] 2025-11-21 18:38:26,897 [wrapper] ==== wrapper stderr END ====
[2025-11-21 19:42:05]  *** Error codes and diagnostics ***
[2025-11-21 19:42:05]     "exeErrorCode": 0,
[2025-11-21 19:42:05]     "exeErrorDiag": "",
[2025-11-21 19:42:05]     "pilotErrorCode": 0,
[2025-11-21 19:42:05]     "pilotErrorDiag": "",
[2025-11-21 19:42:05]  *** Listing of results directory ***
[2025-11-21 19:42:05] total 1325260
[2025-11-21 19:42:05] -rw-r--r-- 1 boinc boinc    576529 Nov 20 14:12 pilot3.tar.gz
[2025-11-21 19:42:05] -rw-r--r-- 1 boinc boinc      5112 Nov 20 14:48 queuedata.json
[2025-11-21 19:42:05] -rwx------ 1 boinc boinc     36292 Nov 20 14:49 runpilot2-wrapper.sh
[2025-11-21 19:42:05] -rw-r--r-- 1 boinc boinc       100 Nov 21 00:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 19:42:05] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 00:08 run_atlas
[2025-11-21 19:42:05] -rw-r--r-- 1 boinc boinc       105 Nov 21 00:08 job.xml
[2025-11-21 19:42:05] -rw-r--r-- 1 boinc boinc      6632 Nov 21 01:10 init_data.xml
[2025-11-21 19:42:05] -rw-r--r-- 2 boinc boinc 409305273 Nov 21 01:10 EVNT.47493127._000557.pool.root.1
[2025-11-21 19:42:05] -rw-r--r-- 2 boinc boinc     15847 Nov 21 01:10 start_atlas.sh
[2025-11-21 19:42:05] drwxrwx--x 2 boinc boinc      4096 Nov 21 01:10 shared
[2025-11-21 19:42:05] -rw-r--r-- 2 boinc boinc    590101 Nov 21 01:10 input.tar.gz
[2025-11-21 19:42:05] -rw-r--r-- 1 boinc boinc         0 Nov 21 01:10 boinc_lockfile
[2025-11-21 19:42:05] -rw-r--r-- 1 boinc boinc      2785 Nov 21 01:10 pandaJob.out
[2025-11-21 19:42:05] -rw------- 1 boinc boinc    989817 Nov 21 01:10 agis_schedconf.cvmfs.json
[2025-11-21 19:42:05] drwx------ 5 boinc boinc      4096 Nov 21 01:10 pilot3
[2025-11-21 19:42:05] -rw-r--r-- 1 boinc boinc       530 Nov 21 19:29 boinc_task_state.xml
[2025-11-21 19:42:05] -rw------- 1 boinc boinc 921610530 Nov 21 19:36 HITS.47523449._005570.pool.root.1
[2025-11-21 19:42:05] -rw------- 1 boinc boinc        95 Nov 21 19:37 pilot_heartbeat.json
[2025-11-21 19:42:05] -rw------- 1 boinc boinc      1045 Nov 21 19:37 memory_monitor_summary.json
[2025-11-21 19:42:05] -rw------- 1 boinc boinc   1526164 Nov 21 19:37 agis_ddmendpoints.agis.ALL.json
[2025-11-21 19:42:05] -rw------- 1 boinc boinc   1818326 Nov 21 19:37 log.47523449._005570.job.log.tgz.1
[2025-11-21 19:42:05] -rw------- 1 boinc boinc      8629 Nov 21 19:37 heartbeat.json
[2025-11-21 19:42:05] -rw------- 1 boinc boinc      4906 Nov 21 19:38 pilotlog.txt
[2025-11-21 19:42:05] -rw------- 1 boinc boinc   9297376 Nov 21 19:38 log.47523449._005570.job.log.1
[2025-11-21 19:42:05] -rw------- 1 boinc boinc       353 Nov 21 19:38 output.list
[2025-11-21 19:42:05] -rw-r--r-- 1 boinc boinc       620 Nov 21 19:38 runtime_log
[2025-11-21 19:42:05] -rw------- 1 boinc boinc  11130880 Nov 21 19:38 result.tar.gz
[2025-11-21 19:42:05] -rw-r--r-- 1 boinc boinc      9206 Nov 21 19:38 runtime_log.err
[2025-11-21 19:42:05] -rw------- 1 boinc boinc       673 Nov 21 19:38 01kLDmBDKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmzHKDmm0yqPn.diag
[2025-11-21 19:42:05] -rw-r--r-- 1 boinc boinc        28 Nov 21 19:42 wrapper_checkpoint.txt
[2025-11-21 19:42:05] -rw-r--r-- 1 boinc boinc      8192 Nov 21 19:42 boinc_mmap_file
[2025-11-21 19:42:05] -rw-r--r-- 1 boinc boinc     21082 Nov 21 19:42 stderr.txt
[2025-11-21 19:42:05] HITS file was successfully produced:
[2025-11-21 19:42:05] -rw------- 1 boinc boinc 921610530 Nov 21 19:36 shared/HITS.pool.root.1
[2025-11-21 19:42:05]  *** Contents of shared directory: ***
[2025-11-21 19:42:05] total 1311204
[2025-11-21 19:42:05] -rw-r--r-- 2 boinc boinc 409305273 Nov 21 01:10 ATLAS.root_0
[2025-11-21 19:42:05] -rw-r--r-- 2 boinc boinc     15847 Nov 21 01:10 start_atlas.sh
[2025-11-21 19:42:05] -rw-r--r-- 2 boinc boinc    590101 Nov 21 01:10 input.tar.gz
[2025-11-21 19:42:05] -rw------- 1 boinc boinc 921610530 Nov 21 19:36 HITS.pool.root.1
[2025-11-21 19:42:05] -rw------- 1 boinc boinc  11130880 Nov 21 19:38 result.tar.gz
19:42:07 (2347361): run_atlas exited; CPU time 264297.331438
19:42:07 (2347361): called boinc_finish(0)

</stderr_txt>
]]>

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