Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:40:43 (1231531): wrapper (7.7.26015): starting
23:40:43 (1231531): wrapper: running run_atlas (--nthreads 4)
[2025-11-24 23:40:43] Arguments: --nthreads 4
[2025-11-24 23:40:43] Threads: 4
[2025-11-24 23:40:43] Checking for CVMFS
[2025-11-24 23:40:43] No cvmfs_config command found, will try listing directly
[2025-11-24 23:40:43] CVMFS is ok
[2025-11-24 23:40:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 23:40:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 23:40:43] Further information can be found at the LHC@home message board.
[2025-11-24 23:40:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 23:40:43] Checking for apptainer binary...
[2025-11-24 23:40:43] which: no apptainer in ((null))
[2025-11-24 23:40:43] apptainer is not installed, using version from CVMFS
[2025-11-24 23:40:43] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 23:40:43] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2025-11-24 23:40:43] apptainer works
[2025-11-24 23:40:43] Set ATHENA_PROC_NUMBER=4
[2025-11-24 23:40:43] Set ATHENA_CORE_NUMBER=4
[2025-11-24 23:40:44] Starting ATLAS job with PandaID=6893839984
[2025-11-24 23:40:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 14:56:40]  *** The last 200 lines of the pilot log: ***
[2025-11-25 14:56:40] 2025-11-25 13:53:30,755 | INFO     | PID=1237815 has CPU usage=20.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-25 14:56:40] 2025-11-25 13:53:30,756 | INFO     | .. there are 5 such processes running
[2025-11-25 14:56:40] 2025-11-25 13:53:30,932 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 14:56:40] 2025-11-25 13:53:30,951 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2712.0169609375002
[2025-11-25 14:56:40] 2025-11-25 13:53:30,973 | INFO     | using path: /scratch/boinc/var/slot116/slots/0/PanDA_Pilot-6893839984/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 14:56:40] 2025-11-25 13:53:30,973 | INFO     | extracted standard info from prmon json
[2025-11-25 14:56:40] 2025-11-25 13:53:30,973 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 14:56:40] 2025-11-25 13:53:30,974 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 14:56:40] 2025-11-25 13:53:30,987 | INFO     | fitting pss+swap vs Time
[2025-11-25 14:56:40] 2025-11-25 13:53:30,988 | INFO     | sum of square deviations: 223797491008.0
[2025-11-25 14:56:40] 2025-11-25 13:53:31,008 | INFO     | sum of deviations: 856152007653.9999
[2025-11-25 14:56:40] 2025-11-25 13:53:31,009 | INFO     | mean x: 1764051421.0
[2025-11-25 14:56:40] 2025-11-25 13:53:31,009 | INFO     | mean y: 2282536.6655518394
[2025-11-25 14:56:40] 2025-11-25 13:53:31,009 | INFO     | intersect: -6746212090.7387085
[2025-11-25 14:56:40] 2025-11-25 13:53:31,010 | INFO     | chi2: 3.748574573322505
[2025-11-25 14:56:40] 2025-11-25 13:53:31,011 | INFO     | sum of square deviations: 220075877043.0
[2025-11-25 14:56:40] 2025-11-25 13:53:31,031 | INFO     | sum of deviations: 1003938561657.4998
[2025-11-25 14:56:40] 2025-11-25 13:53:31,031 | INFO     | mean x: 1764051268.5
[2025-11-25 14:56:40] 2025-11-25 13:53:31,031 | INFO     | mean y: 2288584.24103139
[2025-11-25 14:56:40] 2025-11-25 13:53:31,031 | INFO     | intersect: -8044931842.566344
[2025-11-25 14:56:40] 2025-11-25 13:53:31,032 | INFO     | chi2: 2.061961974043463
[2025-11-25 14:56:40] 2025-11-25 13:53:31,032 | INFO     | current chi2=2.061961974043463 (change=44.993438606828434 %)
[2025-11-25 14:56:40] 2025-11-25 13:53:31,033 | INFO     | sum of square deviations: 216395752228.0
[2025-11-25 14:56:40] 2025-11-25 13:53:31,053 | INFO     | sum of deviations: 993467550324.0001
[2025-11-25 14:56:40] 2025-11-25 13:53:31,054 | INFO     | mean x: 1764051116.0
[2025-11-25 14:56:40] 2025-11-25 13:53:31,054 | INFO     | mean y: 2288148.727170237
[2025-11-25 14:56:40] 2025-11-25 13:53:31,054 | INFO     | intersect: -8096426926.845716
[2025-11-25 14:56:40] 2025-11-25 13:53:31,055 | INFO     | chi2: 2.0516539582001885
[2025-11-25 14:56:40] 2025-11-25 13:53:31,055 | INFO     | current chi2=2.0516539582001885 (change=0.49991299417906615 %)
[2025-11-25 14:56:40] 2025-11-25 13:53:31,055 | INFO     | right removable region: 886
[2025-11-25 14:56:40] 2025-11-25 13:53:31,056 | INFO     | sum of square deviations: 220075877043.0
[2025-11-25 14:56:40] 2025-11-25 13:53:31,076 | INFO     | sum of deviations: 685314238222.9999
[2025-11-25 14:56:40] 2025-11-25 13:53:31,077 | INFO     | mean x: 1764051573.5
[2025-11-25 14:56:40] 2025-11-25 13:53:31,077 | INFO     | mean y: 2289524.6995515693
[2025-11-25 14:56:40] 2025-11-25 13:53:31,077 | INFO     | intersect: -5490950700.093589
[2025-11-25 14:56:40] 2025-11-25 13:53:31,078 | INFO     | chi2: 1.8332714872678058
[2025-11-25 14:56:40] 2025-11-25 13:53:31,078 | INFO     | current chi2=1.8332714872678058 (change=51.09417055980009 %)
[2025-11-25 14:56:40] 2025-11-25 13:53:31,079 | INFO     | sum of square deviations: 216395752228.0
[2025-11-25 14:56:40] 2025-11-25 13:53:31,098 | INFO     | sum of deviations: 659999228462.9999
[2025-11-25 14:56:40] 2025-11-25 13:53:31,099 | INFO     | mean x: 1764051726.0
[2025-11-25 14:56:40] 2025-11-25 13:53:31,099 | INFO     | mean y: 2290573.0169109358
[2025-11-25 14:56:40] 2025-11-25 13:53:31,099 | INFO     | intersect: -5378003476.850187
[2025-11-25 14:56:40] 2025-11-25 13:53:31,100 | INFO     | chi2: 1.8224233222422057
[2025-11-25 14:56:40] 2025-11-25 13:53:31,100 | INFO     | current chi2=1.8224233222422057 (change=0.5917380541257136 %)
[2025-11-25 14:56:40] 2025-11-25 13:53:31,100 | INFO     | left removable region: 20
[2025-11-25 14:56:40] 2025-11-25 13:53:31,101 | INFO     | sum of square deviations: 201387041052.5
[2025-11-25 14:56:40] 2025-11-25 13:53:31,119 | INFO     | sum of deviations: 789621810758.4998
[2025-11-25 14:56:40] 2025-11-25 13:53:31,120 | INFO     | mean x: 1764051695.5
[2025-11-25 14:56:40] 2025-11-25 13:53:31,120 | INFO     | mean y: 2296348.825635104
[2025-11-25 14:56:40] 2025-11-25 13:53:31,120 | INFO     | intersect: -6914403389.11423
[2025-11-25 14:56:40] 2025-11-25 13:53:31,121 | INFO     | chi2: 0.09879765102753335
[2025-11-25 14:56:40] 2025-11-25 13:53:31,121 | INFO     | current memory leak: 3.92 B/s (using 866 data points, chi2=0.10)
[2025-11-25 14:56:40] 2025-11-25 13:53:31,122 | INFO     | could have reported an average CPU frequency of 2676 MHz (34 samples)
[2025-11-25 14:56:40] 2025-11-25 13:53:31,122 | INFO     | ..............................
[2025-11-25 14:56:40] 2025-11-25 13:53:31,122 | INFO     | . Timing measurements:
[2025-11-25 14:56:40] 2025-11-25 13:53:31,122 | INFO     | . get job = 0 s
[2025-11-25 14:56:40] 2025-11-25 13:53:31,122 | INFO     | . initial setup = 1 s
[2025-11-25 14:56:40] 2025-11-25 13:53:31,122 | INFO     | . payload setup = 9 s
[2025-11-25 14:56:40] 2025-11-25 13:53:31,122 | INFO     | . stage-in = 0 s
[2025-11-25 14:56:40] 2025-11-25 13:53:31,122 | INFO     | . payload execution = 54710 s
[2025-11-25 14:56:40] 2025-11-25 13:53:31,122 | INFO     | . stage-out = 2 s
[2025-11-25 14:56:40] 2025-11-25 13:53:31,123 | INFO     | . log creation = 0 s
[2025-11-25 14:56:40] 2025-11-25 13:53:31,123 | INFO     | ..............................
[2025-11-25 14:56:40] 2025-11-25 13:53:31,209 | INFO     | 
[2025-11-25 14:56:40] 2025-11-25 13:53:31,209 | INFO     | job summary report
[2025-11-25 14:56:40] 2025-11-25 13:53:31,209 | INFO     | --------------------------------------------------
[2025-11-25 14:56:40] 2025-11-25 13:53:31,209 | INFO     | PanDA job id: 6893839984
[2025-11-25 14:56:40] 2025-11-25 13:53:31,209 | INFO     | task id: 47523449
[2025-11-25 14:56:40] 2025-11-25 13:53:31,209 | INFO     | errors: (none)
[2025-11-25 14:56:40] 2025-11-25 13:53:31,209 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 14:56:40] 2025-11-25 13:53:31,210 | INFO     | pilot state: finished 
[2025-11-25 14:56:40] 2025-11-25 13:53:31,210 | INFO     | transexitcode: 0
[2025-11-25 14:56:40] 2025-11-25 13:53:31,210 | INFO     | exeerrorcode: 0
[2025-11-25 14:56:40] 2025-11-25 13:53:31,210 | INFO     | exeerrordiag: 
[2025-11-25 14:56:40] 2025-11-25 13:53:31,210 | INFO     | exitcode: 0
[2025-11-25 14:56:40] 2025-11-25 13:53:31,210 | INFO     | exitmsg: OK
[2025-11-25 14:56:40] 2025-11-25 13:53:31,210 | INFO     | cpuconsumptiontime: 216539 s
[2025-11-25 14:56:40] 2025-11-25 13:53:31,210 | INFO     | nevents: 1000
[2025-11-25 14:56:40] 2025-11-25 13:53:31,210 | INFO     | neventsw: 0
[2025-11-25 14:56:40] 2025-11-25 13:53:31,210 | INFO     | pid: 1245484
[2025-11-25 14:56:40] 2025-11-25 13:53:31,211 | INFO     | pgrp: 1245484
[2025-11-25 14:56:40] 2025-11-25 13:53:31,211 | INFO     | corecount: 4
[2025-11-25 14:56:40] 2025-11-25 13:53:31,211 | INFO     | event service: False
[2025-11-25 14:56:40] 2025-11-25 13:53:31,211 | INFO     | sizes: {0: 2284322, 7: 2284584, 11: 2284612, 54724: 2337068, 54727: 2346147, 54735: 2346337}
[2025-11-25 14:56:40] 2025-11-25 13:53:31,211 | INFO     | --------------------------------------------------
[2025-11-25 14:56:40] 2025-11-25 13:53:31,211 | INFO     | 
[2025-11-25 14:56:40] 2025-11-25 13:53:31,211 | INFO     | executing command: ls -lF /scratch/boinc/var/slot116/slots/0
[2025-11-25 14:56:40] 2025-11-25 13:53:31,242 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 14:56:40] 2025-11-25 13:53:31,243 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 14:56:40] 2025-11-25 13:53:31,243 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 14:56:40] 2025-11-25 13:53:31,243 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 14:56:40] 2025-11-25 13:53:31,243 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 14:56:40] 2025-11-25 13:53:31,243 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 14:56:40] 2025-11-25 13:53:31,243 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 14:56:40] 2025-11-25 13:53:31,243 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 14:56:40] 2025-11-25 13:53:31,243 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 14:56:40] 2025-11-25 13:53:31,244 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 14:56:40] 2025-11-25 13:53:31,244 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 14:56:40] 2025-11-25 13:53:31,244 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 14:56:40] 2025-11-25 13:53:31,244 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 14:56:40] 2025-11-25 13:53:31,244 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 14:56:40] 2025-11-25 13:53:31,244 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 14:56:40] 2025-11-25 13:53:31,244 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 14:56:40] 2025-11-25 13:53:31,244 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 14:56:40] 2025-11-25 13:53:31,244 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 14:56:40] 2025-11-25 13:53:31,244 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 14:56:40] 2025-11-25 13:53:31,244 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 14:56:40] 2025-11-25 13:53:31,245 | INFO     | job 6893839984 has completed (purged errors)
[2025-11-25 14:56:40] 2025-11-25 13:53:31,245 | INFO     | overall cleanup function is called
[2025-11-25 14:56:40] 2025-11-25 13:53:32,261 | INFO     | --- collectZombieJob: --- 10, [1245484]
[2025-11-25 14:56:40] 2025-11-25 13:53:32,261 | INFO     | zombie collector waiting for pid 1245484
[2025-11-25 14:56:40] 2025-11-25 13:53:32,261 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 14:56:40] 2025-11-25 13:53:32,261 | INFO     | collected zombie processes
[2025-11-25 14:56:40] 2025-11-25 13:53:32,261 | INFO     | will attempt to kill all subprocesses of pid=1245484
[2025-11-25 14:56:40] 2025-11-25 13:53:32,944 | INFO     | process IDs to be killed: [1245484] (in reverse order)
[2025-11-25 14:56:40] 2025-11-25 13:53:33,198 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 14:56:40] 2025-11-25 13:53:33,199 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 14:56:40] 2025-11-25 13:53:33,232 | INFO     | did not find any defunct processes belonging to 1245484
[2025-11-25 14:56:40] 2025-11-25 13:53:33,265 | INFO     | did not find any defunct processes belonging to 1245484
[2025-11-25 14:56:40] 2025-11-25 13:53:33,266 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 14:56:40] 2025-11-25 13:53:33,267 | INFO     | ready for new job
[2025-11-25 14:56:40] 2025-11-25 13:53:33,267 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 14:56:40] 2025-11-25 13:53:33,272 | INFO     | ***************************************
[2025-11-25 14:56:40] 2025-11-25 13:53:33,272 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 14:56:40] 2025-11-25 13:53:33,273 | INFO     | ***************************************
[2025-11-25 14:56:40] 2025-11-25 13:53:33,273 | INFO     | 
[2025-11-25 14:56:40] 2025-11-25 13:53:33,281 | INFO     | architecture information:
[2025-11-25 14:56:40] 2025-11-25 13:53:33,282 | INFO     | executing command: cat /etc/os-release
[2025-11-25 14:56:40] 2025-11-25 13:53:33,305 | INFO     | cat /etc/os-release:
[2025-11-25 14:56:40] NAME="CentOS Linux"
[2025-11-25 14:56:40] VERSION="7 (Core)"
[2025-11-25 14:56:40] ID="centos"
[2025-11-25 14:56:40] ID_LIKE="rhel fedora"
[2025-11-25 14:56:40] VERSION_ID="7"
[2025-11-25 14:56:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 14:56:40] ANSI_COLOR="0;31"
[2025-11-25 14:56:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 14:56:40] HOME_URL="https://www.centos.org/"
[2025-11-25 14:56:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 14:56:40] 
[2025-11-25 14:56:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 14:56:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 14:56:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 14:56:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 14:56:40] 
[2025-11-25 14:56:40] 2025-11-25 13:53:33,305 | INFO     | ***************************************
[2025-11-25 14:56:40] 2025-11-25 13:53:33,808 | INFO     | executing command: df -mP /scratch/boinc/var/slot116/slots/0
[2025-11-25 14:56:40] 2025-11-25 13:53:33,830 | INFO     | sufficient remaining disk space (3260887859200 B)
[2025-11-25 14:56:40] 2025-11-25 13:53:33,830 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 14:56:40] 2025-11-25 13:53:33,831 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 14:56:40] 2025-11-25 13:53:33,831 | INFO     | update_server=False
[2025-11-25 14:56:40] 2025-11-25 13:53:33,831 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 14:56:40] 2025-11-25 13:53:33,831 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 14:56:40] 2025-11-25 13:53:33,831 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 14:56:40] 2025-11-25 13:53:34,074 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 14:56:40] 2025-11-25 13:53:34,074 | INFO     | aborting loop
[2025-11-25 14:56:40] 2025-11-25 13:53:34,519 | INFO     | all data control threads have been joined
[2025-11-25 14:56:40] 2025-11-25 13:53:34,832 | INFO     | [job] retrieve thread has finished
[2025-11-25 14:56:40] 2025-11-25 13:53:34,896 | INFO     | all payload control threads have been joined
[2025-11-25 14:56:40] 2025-11-25 13:53:35,010 | INFO     | all job control threads have been joined
[2025-11-25 14:56:40] 2025-11-25 13:53:35,080 | INFO     | [job] job monitor thread has finished
[2025-11-25 14:56:40] 2025-11-25 13:53:35,264 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 14:56:40] 2025-11-25 13:53:35,275 | INFO     | [data] copytool_in thread has finished
[2025-11-25 14:56:40] 2025-11-25 13:53:35,437 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 14:56:40] 2025-11-25 13:53:35,476 | INFO     | [payload] validate_post thread has finished
[2025-11-25 14:56:40] 2025-11-25 13:53:35,527 | INFO     | [data] control thread has finished
[2025-11-25 14:56:40] 2025-11-25 13:53:35,534 | INFO     | [payload] failed_post thread has finished
[2025-11-25 14:56:40] 2025-11-25 13:53:35,570 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 14:56:40] 2025-11-25 13:53:35,838 | INFO     | [data] copytool_out thread has finished
[2025-11-25 14:56:40] 2025-11-25 13:53:35,901 | INFO     | [payload] control thread has finished
[2025-11-25 14:56:40] 2025-11-25 13:53:36,016 | INFO     | [job] control thread has finished
[2025-11-25 14:56:40] 2025-11-25 13:53:36,219 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 14:56:40] 2025-11-25 13:53:36,249 | INFO     | [job] validate thread has finished
[2025-11-25 14:56:40] 2025-11-25 13:53:37,224 | INFO     | [job] queue monitor thread has finished
[2025-11-25 14:56:40] 2025-11-25 13:53:37,837 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 14:56:40] 2025-11-25 13:53:43,906 | INFO     | job.realtimelogging is not enabled
[2025-11-25 14:56:40] 2025-11-25 13:53:44,911 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 14:56:40] 2025-11-25 13:54:03,847 | INFO     | PID=1237815 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 14:56:40] 2025-11-25 13:54:03,848 | INFO     | .. there are 5 such processes running
[2025-11-25 14:56:40] 2025-11-25 13:54:03,848 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 14:56:40] 2025-11-25 13:54:03,849 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 14:56:40] 2025-11-25 13:54:03,849 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 14:56:40] 2025-11-25 13:54:28,176 | INFO     | [monitor] cgroup control has ended
[2025-11-25 14:56:40] 2025-11-25 13:54:28,335 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22816902883136)>', '<ExcThread(monitor, started 22816661399296)>']
[2025-11-25 14:56:40] 2025-11-25 13:54:28,963 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 14:56:40] 2025-11-25 13:54:28,964 | INFO     | [monitor] control thread has ended
[2025-11-25 14:56:40] 2025-11-25 13:54:33,351 | INFO     | all workflow threads have been joined
[2025-11-25 14:56:40] 2025-11-25 13:54:33,352 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 14:56:40] 2025-11-25 13:54:33,352 | INFO     | traces error code: 0
[2025-11-25 14:56:40] 2025-11-25 13:54:33,352 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 14:56:40] 2025-11-25 13:54:33,502 [wrapper] ==== pilot stdout END ====
[2025-11-25 14:56:40] 2025-11-25 13:54:33,506 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 14:56:40] 2025-11-25 13:54:33,510 [wrapper] pilotpid: 1237815
[2025-11-25 14:56:40] 2025-11-25 13:54:33,514 [wrapper] Pilot exit status: 0
[2025-11-25 14:56:40] 2025-11-25 13:54:33,529 [wrapper] pandaids: 6893839984
[2025-11-25 14:56:40] 2025-11-25 13:54:33,717 [wrapper] cleanup supervisor_pilot 2380098 1237816
[2025-11-25 14:56:40] 2025-11-25 13:54:33,721 [wrapper] Test setup, not cleaning
[2025-11-25 14:56:40] 2025-11-25 13:54:33,725 [wrapper] apfmon messages muted
[2025-11-25 14:56:40] 2025-11-25 13:54:33,728 [wrapper] ==== wrapper stdout END ====
[2025-11-25 14:56:40] 2025-11-25 13:54:33,732 [wrapper] ==== wrapper stderr END ====
[2025-11-25 14:56:40]  *** Error codes and diagnostics ***
[2025-11-25 14:56:40]     "exeErrorCode": 0,
[2025-11-25 14:56:40]     "exeErrorDiag": "",
[2025-11-25 14:56:40]     "pilotErrorCode": 0,
[2025-11-25 14:56:40]     "pilotErrorDiag": "",
[2025-11-25 14:56:40]  *** Listing of results directory ***
[2025-11-25 14:56:40] total 1302060
[2025-11-25 14:56:40] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-25 14:56:40] -rwx------ 1 boinc boinc     36292 Nov 20 11:19 runpilot2-wrapper.sh
[2025-11-25 14:56:40] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:20 queuedata.json
[2025-11-25 14:56:40] -rw-r--r-- 1 boinc boinc       100 Nov 24 23:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 14:56:40] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 23:40 run_atlas
[2025-11-25 14:56:40] -rw-r--r-- 1 boinc boinc       105 Nov 24 23:40 job.xml
[2025-11-25 14:56:40] -rw-r--r-- 1 boinc boinc      6688 Nov 24 23:40 init_data.xml
[2025-11-25 14:56:40] -rw-r--r-- 2 boinc boinc 410300427 Nov 24 23:40 EVNT.47493127._000158.pool.root.1
[2025-11-25 14:56:40] -rw-r--r-- 2 boinc boinc     15847 Nov 24 23:40 start_atlas.sh
[2025-11-25 14:56:40] drwxrwx--x 2 boinc boinc      4096 Nov 24 23:40 shared
[2025-11-25 14:56:40] -rw-r--r-- 2 boinc boinc    590104 Nov 24 23:40 input.tar.gz
[2025-11-25 14:56:40] -rw-r--r-- 1 boinc boinc         0 Nov 24 23:40 boinc_lockfile
[2025-11-25 14:56:40] -rw-r--r-- 1 boinc boinc      2786 Nov 24 23:40 pandaJob.out
[2025-11-25 14:56:40] -rw------- 1 boinc boinc    991801 Nov 24 23:40 agis_schedconf.cvmfs.json
[2025-11-25 14:56:40] drwx------ 5 boinc boinc      4096 Nov 24 23:40 pilot3
[2025-11-25 14:56:40] -rw-r--r-- 1 boinc boinc       532 Nov 25 14:46 boinc_task_state.xml
[2025-11-25 14:56:40] -rw------- 1 boinc boinc 900720897 Nov 25 14:52 HITS.47523449._001577.pool.root.1
[2025-11-25 14:56:40] -rw------- 1 boinc boinc      1041 Nov 25 14:53 memory_monitor_summary.json
[2025-11-25 14:56:40] -rw------- 1 boinc boinc   1516240 Nov 25 14:53 agis_ddmendpoints.agis.ALL.json
[2025-11-25 14:56:40] -rw------- 1 boinc boinc   1644619 Nov 25 14:53 log.47523449._001577.job.log.tgz.1
[2025-11-25 14:56:40] -rw------- 1 boinc boinc      8603 Nov 25 14:53 heartbeat.json
[2025-11-25 14:56:40] -rw------- 1 boinc boinc        95 Nov 25 14:54 pilot_heartbeat.json
[2025-11-25 14:56:40] -rw------- 1 boinc boinc      4907 Nov 25 14:54 pilotlog.txt
[2025-11-25 14:56:40] -rw------- 1 boinc boinc   7536236 Nov 25 14:54 log.47523449._001577.job.log.1
[2025-11-25 14:56:40] -rw------- 1 boinc boinc       353 Nov 25 14:54 output.list
[2025-11-25 14:56:40] -rw-r--r-- 1 boinc boinc       620 Nov 25 14:54 runtime_log
[2025-11-25 14:56:40] -rw------- 1 boinc boinc   9205760 Nov 25 14:54 result.tar.gz
[2025-11-25 14:56:40] -rw-r--r-- 1 boinc boinc      9223 Nov 25 14:54 runtime_log.err
[2025-11-25 14:56:40] -rw------- 1 boinc boinc       671 Nov 25 14:54 71VKDmsvGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMLHKDm4v8WRo.diag
[2025-11-25 14:56:40] -rw-r--r-- 1 boinc boinc        28 Nov 25 14:56 wrapper_checkpoint.txt
[2025-11-25 14:56:40] -rw-r--r-- 1 boinc boinc      8192 Nov 25 14:56 boinc_mmap_file
[2025-11-25 14:56:40] -rw-r--r-- 1 boinc boinc     21081 Nov 25 14:56 stderr.txt
[2025-11-25 14:56:40] HITS file was successfully produced:
[2025-11-25 14:56:40] -rw------- 1 boinc boinc 900720897 Nov 25 14:52 shared/HITS.pool.root.1
[2025-11-25 14:56:40]  *** Contents of shared directory: ***
[2025-11-25 14:56:40] total 1289896
[2025-11-25 14:56:40] -rw-r--r-- 2 boinc boinc 410300427 Nov 24 23:40 ATLAS.root_0
[2025-11-25 14:56:40] -rw-r--r-- 2 boinc boinc     15847 Nov 24 23:40 start_atlas.sh
[2025-11-25 14:56:40] -rw-r--r-- 2 boinc boinc    590104 Nov 24 23:40 input.tar.gz
[2025-11-25 14:56:40] -rw------- 1 boinc boinc 900720897 Nov 25 14:52 HITS.pool.root.1
[2025-11-25 14:56:40] -rw------- 1 boinc boinc   9205760 Nov 25 14:54 result.tar.gz
14:56:41 (1231531): run_atlas exited; CPU time 219376.570428
14:56:41 (1231531): called boinc_finish(0)

</stderr_txt>
]]>

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