Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:18:17 (2935521): wrapper (7.7.26015): starting
00:18:17 (2935521): wrapper: running run_atlas (--nthreads 3)
[2025-11-21 00:18:17] Arguments: --nthreads 3
[2025-11-21 00:18:17] Threads: 3
[2025-11-21 00:18:17] Checking for CVMFS
[2025-11-21 00:18:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 00:18:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 00:18:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 00:18:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 00:18:17] 2.9.2.0 16720 625 66364 153101 3 85 34428510 36864001 0 130560 0 8770078 99.999 13834 603 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 00:18:17] CVMFS is ok
[2025-11-21 00:18:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:18:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:18:17] Further information can be found at the LHC@home message board.
[2025-11-21 00:18:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:18:17] Checking for apptainer binary...
[2025-11-21 00:18:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 00:18:17] Running /usr/bin/apptainer --version
[2025-11-21 00:18:17] apptainer version 1.4.1-1.1
[2025-11-21 00:18:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:18:17] thA335
[2025-11-21 00:18:17] apptainer works
[2025-11-21 00:18:17] Set ATHENA_PROC_NUMBER=3
[2025-11-21 00:18:17] Set ATHENA_CORE_NUMBER=3
[2025-11-21 00:18:18] Starting ATLAS job with PandaID=6893860182
[2025-11-21 00:18:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 00:22:35]  *** The last 200 lines of the pilot log: ***
[2025-11-21 00:22:35] 2025-11-20 23:21:46,979 | INFO     | update_server=False
[2025-11-21 00:22:35] 2025-11-20 23:21:46,979 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 00:22:35] 2025-11-20 23:21:47,072 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 00:22:35] 2025-11-20 23:21:47,072 | INFO     | aborting loop
[2025-11-21 00:22:35] 2025-11-20 23:21:47,787 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 00:22:35] 2025-11-20 23:21:47,908 | INFO     | all job control threads have been joined
[2025-11-21 00:22:35] 2025-11-20 23:21:47,985 | INFO     | [job] retrieve thread has finished
[2025-11-21 00:22:35] 2025-11-20 23:21:48,030 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 00:22:35] 2025-11-20 23:21:48,038 | INFO     | all data control threads have been joined
[2025-11-21 00:22:35] 2025-11-20 23:21:48,075 | INFO     | [job] job monitor thread has finished
[2025-11-21 00:22:35] 2025-11-20 23:21:48,328 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 00:22:35] 2025-11-20 23:21:48,435 | INFO     | all payload control threads have been joined
[2025-11-21 00:22:35] 2025-11-20 23:21:48,751 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 00:22:35] 2025-11-20 23:21:48,914 | INFO     | [job] control thread has finished
[2025-11-21 00:22:35] 2025-11-20 23:21:49,004 | INFO     | [payload] failed_post thread has finished
[2025-11-21 00:22:35] 2025-11-20 23:21:49,044 | INFO     | [data] control thread has finished
[2025-11-21 00:22:35] 2025-11-20 23:21:49,346 | INFO     | [payload] validate_post thread has finished
[2025-11-21 00:22:35] 2025-11-20 23:21:49,392 | INFO     | [job] validate thread has finished
[2025-11-21 00:22:35] 2025-11-20 23:21:49,401 | INFO     | [data] copytool_in thread has finished
[2025-11-21 00:22:35] 2025-11-20 23:21:49,441 | INFO     | [payload] control thread has finished
[2025-11-21 00:22:35] 2025-11-20 23:21:49,479 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 00:22:35] 2025-11-20 23:21:49,794 | INFO     | [data] copytool_out thread has finished
[2025-11-21 00:22:35] 2025-11-20 23:21:49,884 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 00:22:35] 2025-11-20 23:21:50,088 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 00:22:35] 2025-11-20 23:21:50,890 | INFO     | [job] queue monitor thread has finished
[2025-11-21 00:22:35] 2025-11-20 23:21:54,096 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 00:22:35] 2025-11-20 23:22:17,121 | INFO     | PID=2939264 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 00:22:35] 2025-11-20 23:22:17,121 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 00:22:35] 2025-11-20 23:22:17,121 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 00:22:35] 2025-11-20 23:22:17,121 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 00:22:35] 2025-11-20 23:22:28,090 | INFO     | [monitor] cgroup control has ended
[2025-11-21 00:22:35] 2025-11-20 23:22:29,960 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140020592052032)>', '<ExcThread(monitor, started 140019792590592)>']
[2025-11-21 00:22:35] 2025-11-20 23:22:30,190 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 00:22:35] 2025-11-20 23:22:30,190 | INFO     | [monitor] control thread has ended
[2025-11-21 00:22:35] 2025-11-20 23:22:34,986 | INFO     | all workflow threads have been joined
[2025-11-21 00:22:35] 2025-11-20 23:22:34,986 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 00:22:35] 2025-11-20 23:22:34,987 | INFO     | traces error code: 0
[2025-11-21 00:22:35] 2025-11-20 23:22:34,987 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 00:22:35] 2025-11-20 23:22:35,030 [wrapper] ==== pilot stdout END ====
[2025-11-21 00:22:35] 2025-11-20 23:22:35,034 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 00:22:35] 2025-11-20 23:22:35,037 [wrapper] pilotpid: 2939264
[2025-11-21 00:22:35] 2025-11-20 23:22:35,040 [wrapper] Pilot exit status: 0
[2025-11-21 00:22:35] 2025-11-20 23:22:35,047 [wrapper] pandaids: 6893860182
[2025-11-21 00:22:35] 2025-11-20 23:22:35,063 [wrapper] cleanup supervisor_pilot 2939270 2939265
[2025-11-21 00:22:35] 2025-11-20 23:22:35,065 [wrapper] Test setup, not cleaning
[2025-11-21 00:22:35] 2025-11-20 23:22:35,068 [wrapper] apfmon messages muted
[2025-11-21 00:22:35] 2025-11-20 23:22:35,070 [wrapper] ==== wrapper stdout END ====
[2025-11-21 00:22:35] 2025-11-20 23:22:35,073 [wrapper] ==== wrapper stderr END ====
[2025-11-21 00:22:35]  *** Error codes and diagnostics ***
[2025-11-21 00:22:35]     "exeErrorCode": 65,
[2025-11-21 00:22:35]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 00:22:35]     "pilotErrorCode": 1305,
[2025-11-21 00:22:35]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 00:22:35]  *** Listing of results directory ***
[2025-11-21 00:22:35] total 403468
[2025-11-21 00:22:35] -rw-r--r-- 1 boinc boinc    576529 Nov 20 14:12 pilot3.tar.gz
[2025-11-21 00:22:35] -rw-r--r-- 1 boinc boinc      5112 Nov 20 14:41 queuedata.json
[2025-11-21 00:22:35] -rwx------ 1 boinc boinc     36292 Nov 20 14:41 runpilot2-wrapper.sh
[2025-11-21 00:22:35] -rw-r--r-- 1 boinc boinc       100 Nov 21 00:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 00:22:35] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 00:18 run_atlas
[2025-11-21 00:22:35] -rw-r--r-- 1 boinc boinc       105 Nov 21 00:18 job.xml
[2025-11-21 00:22:35] -rw-r--r-- 2 boinc boinc 408946658 Nov 21 00:18 EVNT.47493127._000548.pool.root.1
[2025-11-21 00:22:35] -rw-r--r-- 2 boinc boinc    590103 Nov 21 00:18 input.tar.gz
[2025-11-21 00:22:35] -rw-r--r-- 2 boinc boinc     15847 Nov 21 00:18 start_atlas.sh
[2025-11-21 00:22:35] drwxrwx--x 2 boinc boinc      4096 Nov 21 00:18 shared
[2025-11-21 00:22:35] -rw-r--r-- 1 boinc boinc         0 Nov 21 00:18 boinc_setup_complete
[2025-11-21 00:22:35] -rw-r--r-- 1 boinc boinc      6194 Nov 21 00:18 init_data.xml
[2025-11-21 00:22:35] -rw-r--r-- 1 boinc boinc         0 Nov 21 00:18 boinc_lockfile
[2025-11-21 00:22:35] -rw-r--r-- 1 boinc boinc      2785 Nov 21 00:18 pandaJob.out
[2025-11-21 00:22:35] -rw------- 1 boinc boinc    989817 Nov 21 00:18 agis_schedconf.cvmfs.json
[2025-11-21 00:22:35] -rw------- 1 boinc boinc   1526164 Nov 21 00:18 agis_ddmendpoints.agis.ALL.json
[2025-11-21 00:22:35] drwx------ 5 boinc boinc      4096 Nov 21 00:18 pilot3
[2025-11-21 00:22:35] -rw-r--r-- 1 boinc boinc       522 Nov 21 00:19 boinc_task_state.xml
[2025-11-21 00:22:35] -rw------- 1 boinc boinc       962 Nov 21 00:19 memory_monitor_summary.json
[2025-11-21 00:22:35] -rw------- 1 boinc boinc     55834 Nov 21 00:19 log.47523449._005474.job.log.tgz.1
[2025-11-21 00:22:35] -rw------- 1 boinc boinc        95 Nov 21 00:21 pilot_heartbeat.json
[2025-11-21 00:22:35] -rw------- 1 boinc boinc      8403 Nov 21 00:21 heartbeat.json
[2025-11-21 00:22:35] -rw-r--r-- 1 boinc boinc      8192 Nov 21 00:22 boinc_mmap_file
[2025-11-21 00:22:35] -rw-r--r-- 1 boinc boinc        22 Nov 21 00:22 wrapper_checkpoint.txt
[2025-11-21 00:22:35] -rw------- 1 boinc boinc      4752 Nov 21 00:22 pilotlog.txt
[2025-11-21 00:22:35] -rw------- 1 boinc boinc     93864 Nov 21 00:22 log.47523449._005474.job.log.1
[2025-11-21 00:22:35] -rw------- 1 boinc boinc       186 Nov 21 00:22 output.list
[2025-11-21 00:22:35] -rw-r--r-- 1 boinc boinc       620 Nov 21 00:22 runtime_log
[2025-11-21 00:22:35] -rw------- 1 boinc boinc    174080 Nov 21 00:22 result.tar.gz
[2025-11-21 00:22:35] -rw-r--r-- 1 boinc boinc      8744 Nov 21 00:22 runtime_log.err
[2025-11-21 00:22:35] -rw------- 1 boinc boinc       649 Nov 21 00:22 S0tNDmD6Jg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCzHKDmq84wOm.diag
[2025-11-21 00:22:35] -rw-r--r-- 1 boinc boinc      7786 Nov 21 00:22 stderr.txt
[2025-11-21 00:22:35] No HITS result produced
[2025-11-21 00:22:35]  *** Contents of shared directory: ***
[2025-11-21 00:22:35] total 400136
[2025-11-21 00:22:35] -rw-r--r-- 2 boinc boinc 408946658 Nov 21 00:18 ATLAS.root_0
[2025-11-21 00:22:35] -rw-r--r-- 2 boinc boinc    590103 Nov 21 00:18 input.tar.gz
[2025-11-21 00:22:35] -rw-r--r-- 2 boinc boinc     15847 Nov 21 00:18 start_atlas.sh
[2025-11-21 00:22:35] -rw------- 1 boinc boinc    174080 Nov 21 00:22 result.tar.gz
00:22:36 (2935521): run_atlas exited; CPU time 31.542588
00:22:36 (2935521): called boinc_finish(0)

</stderr_txt>
]]>

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