Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:28:40 (1012909): wrapper (7.7.26015): starting
05:28:40 (1012909): wrapper: running run_atlas (--nthreads 4)
[2025-11-23 05:28:40] Arguments: --nthreads 4
[2025-11-23 05:28:40] Threads: 4
[2025-11-23 05:28:40] Checking for CVMFS
[2025-11-23 05:28:40] No cvmfs_config command found, will try listing directly
[2025-11-23 05:28:40] CVMFS is ok
[2025-11-23 05:28:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 05:28:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 05:28:40] Further information can be found at the LHC@home message board.
[2025-11-23 05:28:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 05:28:40] Checking for apptainer binary...
[2025-11-23 05:28:40] which: no apptainer in ((null))
[2025-11-23 05:28:40] apptainer is not installed, using version from CVMFS
[2025-11-23 05:28:40] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 05:28:40] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot96/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2025-11-23 05:28:40] apptainer works
[2025-11-23 05:28:40] Set ATHENA_PROC_NUMBER=4
[2025-11-23 05:28:40] Set ATHENA_CORE_NUMBER=4
[2025-11-23 05:28:40] Starting ATLAS job with PandaID=6893860178
[2025-11-23 05:28:40] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot96/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 22:25:08]  *** The last 200 lines of the pilot log: ***
[2025-11-23 22:25:08] 2025-11-23 21:12:52,716 | INFO     | monitor loop #3918: job 0:6893860178 is in state 'finished'
[2025-11-23 22:25:08] 2025-11-23 21:12:52,717 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 22:25:08] 2025-11-23 21:12:53,447 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 22:25:08] 2025-11-23 21:12:53,466 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2707.791234375
[2025-11-23 22:25:08] 2025-11-23 21:12:53,489 | INFO     | using path: /scratch/boinc/var/slot96/slots/0/PanDA_Pilot-6893860178/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 22:25:08] 2025-11-23 21:12:53,490 | INFO     | extracted standard info from prmon json
[2025-11-23 22:25:08] 2025-11-23 21:12:53,490 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 22:25:08] 2025-11-23 21:12:53,490 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 22:25:08] 2025-11-23 21:12:53,507 | INFO     | fitting pss+swap vs Time
[2025-11-23 22:25:08] 2025-11-23 21:12:53,508 | INFO     | sum of square deviations: 298146030049.3737
[2025-11-23 22:25:08] 2025-11-23 21:12:53,529 | INFO     | sum of deviations: 767798977905.1558
[2025-11-23 22:25:08] 2025-11-23 21:12:53,530 | INFO     | mean x: 1763902244.1732523
[2025-11-23 22:25:08] 2025-11-23 21:12:53,530 | INFO     | mean y: 2268921.1043566363
[2025-11-23 22:25:08] 2025-11-23 21:12:53,530 | INFO     | intersect: -4540210950.174005
[2025-11-23 22:25:08] 2025-11-23 21:12:53,531 | INFO     | chi2: 4.258165866554098
[2025-11-23 22:25:08] 2025-11-23 21:12:53,532 | INFO     | sum of square deviations: 293637895351.7231
[2025-11-23 22:25:08] 2025-11-23 21:12:53,553 | INFO     | sum of deviations: 975079484717.1527
[2025-11-23 22:25:08] 2025-11-23 21:12:53,553 | INFO     | mean x: 1763902091.6741345
[2025-11-23 22:25:08] 2025-11-23 21:12:53,553 | INFO     | mean y: 2275930.297352342
[2025-11-23 22:25:08] 2025-11-23 21:12:53,553 | INFO     | intersect: -5855090471.886371
[2025-11-23 22:25:08] 2025-11-23 21:12:53,554 | INFO     | chi2: 2.11303197093367
[2025-11-23 22:25:08] 2025-11-23 21:12:53,554 | INFO     | current chi2=2.11303197093367 (change=50.37694544661709 %)
[2025-11-23 22:25:08] 2025-11-23 21:12:53,555 | INFO     | sum of square deviations: 289175435929.0706
[2025-11-23 22:25:08] 2025-11-23 21:12:53,576 | INFO     | sum of deviations: 994221668951.6727
[2025-11-23 22:25:08] 2025-11-23 21:12:53,576 | INFO     | mean x: 1763901939.1750257
[2025-11-23 22:25:08] 2025-11-23 21:12:53,576 | INFO     | mean y: 2276582.060388946
[2025-11-23 22:25:08] 2025-11-23 21:12:53,576 | INFO     | intersect: -6062241049.595706
[2025-11-23 22:25:08] 2025-11-23 21:12:53,577 | INFO     | chi2: 2.043401466561682
[2025-11-23 22:25:08] 2025-11-23 21:12:53,577 | INFO     | current chi2=2.043401466561682 (change=3.295288728699201 %)
[2025-11-23 22:25:08] 2025-11-23 21:12:53,577 | INFO     | right removable region: 976
[2025-11-23 22:25:08] 2025-11-23 21:12:53,578 | INFO     | sum of square deviations: 293637791041.72327
[2025-11-23 22:25:08] 2025-11-23 21:12:53,599 | INFO     | sum of deviations: 580165644364.4159
[2025-11-23 22:25:08] 2025-11-23 21:12:53,599 | INFO     | mean x: 1763902396.6741345
[2025-11-23 22:25:08] 2025-11-23 21:12:53,600 | INFO     | mean y: 2275257.9887983706
[2025-11-23 22:25:08] 2025-11-23 21:12:53,600 | INFO     | intersect: -3482819650.71448
[2025-11-23 22:25:08] 2025-11-23 21:12:53,601 | INFO     | chi2: 2.3114723167423956
[2025-11-23 22:25:08] 2025-11-23 21:12:53,601 | INFO     | current chi2=2.3114723167423956 (change=45.7167149147963 %)
[2025-11-23 22:25:08] 2025-11-23 21:12:53,602 | INFO     | sum of square deviations: 289175227309.07104
[2025-11-23 22:25:08] 2025-11-23 21:12:53,623 | INFO     | sum of deviations: 550874867647.0847
[2025-11-23 22:25:08] 2025-11-23 21:12:53,623 | INFO     | mean x: 1763902549.1750257
[2025-11-23 22:25:08] 2025-11-23 21:12:53,623 | INFO     | mean y: 2276258.6018423745
[2025-11-23 22:25:08] 2025-11-23 21:12:53,623 | INFO     | intersect: -3357934062.182669
[2025-11-23 22:25:08] 2025-11-23 21:12:53,624 | INFO     | chi2: 2.2942761139485035
[2025-11-23 22:25:08] 2025-11-23 21:12:53,624 | INFO     | current chi2=2.2942761139485035 (change=0.7439501943993457 %)
[2025-11-23 22:25:08] 2025-11-23 21:12:53,624 | INFO     | left removable region: 20
[2025-11-23 22:25:08] 2025-11-23 21:12:53,625 | INFO     | sum of square deviations: 270926508602.17603
[2025-11-23 22:25:08] 2025-11-23 21:12:53,644 | INFO     | sum of deviations: 732138985978.8779
[2025-11-23 22:25:08] 2025-11-23 21:12:53,644 | INFO     | mean x: 1763902518.6736403
[2025-11-23 22:25:08] 2025-11-23 21:12:53,644 | INFO     | mean y: 2285554.8682008367
[2025-11-23 22:25:08] 2025-11-23 21:12:53,644 | INFO     | intersect: -4764401204.763762
[2025-11-23 22:25:08] 2025-11-23 21:12:53,645 | INFO     | chi2: 0.060166748232637846
[2025-11-23 22:25:08] 2025-11-23 21:12:53,645 | INFO     | current memory leak: 2.70 B/s (using 956 data points, chi2=0.06)
[2025-11-23 22:25:08] 2025-11-23 21:12:53,647 | INFO     | could have reported an average CPU frequency of 2685 MHz (37 samples)
[2025-11-23 22:25:08] 2025-11-23 21:12:53,647 | INFO     | ..............................
[2025-11-23 22:25:08] 2025-11-23 21:12:53,647 | INFO     | . Timing measurements:
[2025-11-23 22:25:08] 2025-11-23 21:12:53,647 | INFO     | . get job = 0 s
[2025-11-23 22:25:08] 2025-11-23 21:12:53,647 | INFO     | . initial setup = 1 s
[2025-11-23 22:25:08] 2025-11-23 21:12:53,647 | INFO     | . payload setup = 9 s
[2025-11-23 22:25:08] 2025-11-23 21:12:53,647 | INFO     | . stage-in = 0 s
[2025-11-23 22:25:08] 2025-11-23 21:12:53,647 | INFO     | . payload execution = 60192 s
[2025-11-23 22:25:08] 2025-11-23 21:12:53,647 | INFO     | . stage-out = 2 s
[2025-11-23 22:25:08] 2025-11-23 21:12:53,647 | INFO     | . log creation = 0 s
[2025-11-23 22:25:08] 2025-11-23 21:12:53,647 | INFO     | ..............................
[2025-11-23 22:25:08] 2025-11-23 21:12:53,741 | INFO     | 
[2025-11-23 22:25:08] 2025-11-23 21:12:53,742 | INFO     | job summary report
[2025-11-23 22:25:08] 2025-11-23 21:12:53,742 | INFO     | --------------------------------------------------
[2025-11-23 22:25:08] 2025-11-23 21:12:53,742 | INFO     | PanDA job id: 6893860178
[2025-11-23 22:25:08] 2025-11-23 21:12:53,742 | INFO     | task id: 47523449
[2025-11-23 22:25:08] 2025-11-23 21:12:53,742 | INFO     | errors: (none)
[2025-11-23 22:25:08] 2025-11-23 21:12:53,742 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 22:25:08] 2025-11-23 21:12:53,742 | INFO     | pilot state: finished 
[2025-11-23 22:25:08] 2025-11-23 21:12:53,742 | INFO     | transexitcode: 0
[2025-11-23 22:25:08] 2025-11-23 21:12:53,742 | INFO     | exeerrorcode: 0
[2025-11-23 22:25:08] 2025-11-23 21:12:53,742 | INFO     | exeerrordiag: 
[2025-11-23 22:25:08] 2025-11-23 21:12:53,743 | INFO     | exitcode: 0
[2025-11-23 22:25:08] 2025-11-23 21:12:53,743 | INFO     | exitmsg: OK
[2025-11-23 22:25:08] 2025-11-23 21:12:53,743 | INFO     | cpuconsumptiontime: 229392 s
[2025-11-23 22:25:08] 2025-11-23 21:12:53,743 | INFO     | nevents: 1000
[2025-11-23 22:25:08] 2025-11-23 21:12:53,743 | INFO     | neventsw: 0
[2025-11-23 22:25:08] 2025-11-23 21:12:53,743 | INFO     | pid: 1037585
[2025-11-23 22:25:08] 2025-11-23 21:12:53,743 | INFO     | pgrp: 1037585
[2025-11-23 22:25:08] 2025-11-23 21:12:53,743 | INFO     | corecount: 4
[2025-11-23 22:25:08] 2025-11-23 21:12:53,743 | INFO     | event service: False
[2025-11-23 22:25:08] 2025-11-23 21:12:53,743 | INFO     | sizes: {0: 2298767, 7: 2299029, 11: 2299057, 60206: 2353756, 60210: 2362772, 60213: 2362828, 60220: 2363202}
[2025-11-23 22:25:08] 2025-11-23 21:12:53,743 | INFO     | --------------------------------------------------
[2025-11-23 22:25:08] 2025-11-23 21:12:53,743 | INFO     | 
[2025-11-23 22:25:08] 2025-11-23 21:12:53,744 | INFO     | executing command: ls -lF /scratch/boinc/var/slot96/slots/0
[2025-11-23 22:25:08] 2025-11-23 21:12:53,778 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 22:25:08] 2025-11-23 21:12:53,778 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 22:25:08] 2025-11-23 21:12:53,778 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 22:25:08] 2025-11-23 21:12:53,778 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 22:25:08] 2025-11-23 21:12:53,779 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 22:25:08] 2025-11-23 21:12:53,779 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 22:25:08] 2025-11-23 21:12:53,779 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 22:25:08] 2025-11-23 21:12:53,779 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 22:25:08] 2025-11-23 21:12:53,779 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 22:25:08] 2025-11-23 21:12:53,779 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 22:25:08] 2025-11-23 21:12:53,779 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 22:25:08] 2025-11-23 21:12:53,779 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 22:25:08] 2025-11-23 21:12:53,779 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 22:25:08] 2025-11-23 21:12:53,779 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 22:25:08] 2025-11-23 21:12:53,780 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 22:25:08] 2025-11-23 21:12:53,780 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 22:25:08] 2025-11-23 21:12:53,780 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 22:25:08] 2025-11-23 21:12:53,780 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 22:25:08] 2025-11-23 21:12:53,780 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 22:25:08] 2025-11-23 21:12:53,780 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 22:25:08] 2025-11-23 21:12:53,780 | INFO     | job 6893860178 has completed (purged errors)
[2025-11-23 22:25:08] 2025-11-23 21:12:53,780 | INFO     | overall cleanup function is called
[2025-11-23 22:25:08] 2025-11-23 21:12:54,797 | INFO     | --- collectZombieJob: --- 10, [1037585]
[2025-11-23 22:25:08] 2025-11-23 21:12:54,798 | INFO     | zombie collector waiting for pid 1037585
[2025-11-23 22:25:08] 2025-11-23 21:12:54,798 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 22:25:08] 2025-11-23 21:12:54,798 | INFO     | collected zombie processes
[2025-11-23 22:25:08] 2025-11-23 21:12:54,798 | INFO     | will attempt to kill all subprocesses of pid=1037585
[2025-11-23 22:25:08] 2025-11-23 21:12:55,580 | INFO     | process IDs to be killed: [1037585] (in reverse order)
[2025-11-23 22:25:08] 2025-11-23 21:12:55,842 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 22:25:08] 2025-11-23 21:12:55,842 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 22:25:08] 2025-11-23 21:12:55,877 | INFO     | did not find any defunct processes belonging to 1037585
[2025-11-23 22:25:08] 2025-11-23 21:12:55,913 | INFO     | did not find any defunct processes belonging to 1037585
[2025-11-23 22:25:08] 2025-11-23 21:12:55,914 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 22:25:08] 2025-11-23 21:12:55,915 | INFO     | ready for new job
[2025-11-23 22:25:08] 2025-11-23 21:12:55,915 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 22:25:08] 2025-11-23 21:12:55,922 | INFO     | ***************************************
[2025-11-23 22:25:08] 2025-11-23 21:12:55,925 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 22:25:08] 2025-11-23 21:12:55,926 | INFO     | ***************************************
[2025-11-23 22:25:08] 2025-11-23 21:12:55,926 | INFO     | 
[2025-11-23 22:25:08] 2025-11-23 21:12:55,935 | INFO     | architecture information:
[2025-11-23 22:25:08] 2025-11-23 21:12:55,936 | INFO     | executing command: cat /etc/os-release
[2025-11-23 22:25:08] 2025-11-23 21:12:55,960 | INFO     | cat /etc/os-release:
[2025-11-23 22:25:08] NAME="CentOS Linux"
[2025-11-23 22:25:08] VERSION="7 (Core)"
[2025-11-23 22:25:08] ID="centos"
[2025-11-23 22:25:08] ID_LIKE="rhel fedora"
[2025-11-23 22:25:08] VERSION_ID="7"
[2025-11-23 22:25:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 22:25:08] ANSI_COLOR="0;31"
[2025-11-23 22:25:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 22:25:08] HOME_URL="https://www.centos.org/"
[2025-11-23 22:25:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 22:25:08] 
[2025-11-23 22:25:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 22:25:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 22:25:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 22:25:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 22:25:08] 
[2025-11-23 22:25:08] 2025-11-23 21:12:55,961 | INFO     | ***************************************
[2025-11-23 22:25:08] 2025-11-23 21:12:56,464 | INFO     | executing command: df -mP /scratch/boinc/var/slot96/slots/0
[2025-11-23 22:25:08] 2025-11-23 21:12:56,492 | INFO     | sufficient remaining disk space (3324069806080 B)
[2025-11-23 22:25:08] 2025-11-23 21:12:56,492 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 22:25:08] 2025-11-23 21:12:56,492 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 22:25:08] 2025-11-23 21:12:56,493 | INFO     | update_server=False
[2025-11-23 22:25:08] 2025-11-23 21:12:56,493 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 22:25:08] 2025-11-23 21:12:56,493 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 22:25:08] 2025-11-23 21:12:56,493 | INFO     | aborting loop
[2025-11-23 22:25:08] 2025-11-23 21:12:56,925 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 22:25:08] 2025-11-23 21:12:57,433 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 22:25:08] 2025-11-23 21:12:57,498 | INFO     | [job] retrieve thread has finished
[2025-11-23 22:25:08] 2025-11-23 21:12:57,499 | INFO     | [job] job monitor thread has finished
[2025-11-23 22:25:08] 2025-11-23 21:12:57,515 | INFO     | all data control threads have been joined
[2025-11-23 22:25:08] 2025-11-23 21:12:57,582 | INFO     | [payload] failed_post thread has finished
[2025-11-23 22:25:08] 2025-11-23 21:12:57,614 | INFO     | all job control threads have been joined
[2025-11-23 22:25:08] 2025-11-23 21:12:57,864 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 22:25:08] 2025-11-23 21:12:57,864 | INFO     | [job] validate thread has finished
[2025-11-23 22:25:08] 2025-11-23 21:12:57,955 | INFO     | all payload control threads have been joined
[2025-11-23 22:25:08] 2025-11-23 21:12:58,000 | INFO     | [data] copytool_in thread has finished
[2025-11-23 22:25:08] 2025-11-23 21:12:58,270 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 22:25:08] 2025-11-23 21:12:58,415 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 22:25:08] 2025-11-23 21:12:58,520 | INFO     | [data] control thread has finished
[2025-11-23 22:25:08] 2025-11-23 21:12:58,619 | INFO     | [job] control thread has finished
[2025-11-23 22:25:08] 2025-11-23 21:12:58,709 | INFO     | [payload] validate_post thread has finished
[2025-11-23 22:25:08] 2025-11-23 21:12:58,753 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 22:25:08] 2025-11-23 21:12:58,931 | INFO     | [data] copytool_out thread has finished
[2025-11-23 22:25:08] 2025-11-23 21:12:58,961 | INFO     | [payload] control thread has finished
[2025-11-23 22:25:08] 2025-11-23 21:12:59,758 | INFO     | [job] queue monitor thread has finished
[2025-11-23 22:25:08] 2025-11-23 21:13:01,439 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 22:25:08] 2025-11-23 21:13:07,046 | INFO     | job.realtimelogging is not enabled
[2025-11-23 22:25:08] 2025-11-23 21:13:08,051 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 22:25:08] 2025-11-23 21:13:26,428 | INFO     | PID=1020215 has CPU usage=12.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-23 22:25:08] 2025-11-23 21:13:26,428 | INFO     | .. there are 10 such processes running
[2025-11-23 22:25:08] 2025-11-23 21:13:26,428 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 22:25:08] 2025-11-23 21:13:26,428 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 22:25:08] 2025-11-23 21:13:26,428 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 22:25:08] 2025-11-23 21:13:36,891 | INFO     | [monitor] cgroup control has ended
[2025-11-23 22:25:08] 2025-11-23 21:13:38,180 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22725070960448)>', '<ExcThread(monitor, started 22724829210368)>']
[2025-11-23 22:25:08] 2025-11-23 21:13:38,483 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 22:25:08] 2025-11-23 21:13:38,483 | INFO     | [monitor] control thread has ended
[2025-11-23 22:25:08] 2025-11-23 21:13:43,205 | INFO     | all workflow threads have been joined
[2025-11-23 22:25:08] 2025-11-23 21:13:43,205 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 22:25:08] 2025-11-23 21:13:43,205 | INFO     | traces error code: 0
[2025-11-23 22:25:08] 2025-11-23 21:13:43,206 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 22:25:08] 2025-11-23 21:13:43,407 [wrapper] ==== pilot stdout END ====
[2025-11-23 22:25:08] 2025-11-23 21:13:43,411 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 22:25:08] 2025-11-23 21:13:43,415 [wrapper] pilotpid: 1020215
[2025-11-23 22:25:08] 2025-11-23 21:13:43,419 [wrapper] Pilot exit status: 0
[2025-11-23 22:25:08] 2025-11-23 21:13:43,435 [wrapper] pandaids: 6893860178
[2025-11-23 22:25:08] 2025-11-23 21:13:43,610 [wrapper] cleanup supervisor_pilot 2756510 1020216
[2025-11-23 22:25:08] 2025-11-23 21:13:43,614 [wrapper] Test setup, not cleaning
[2025-11-23 22:25:08] 2025-11-23 21:13:43,618 [wrapper] apfmon messages muted
[2025-11-23 22:25:08] 2025-11-23 21:13:43,622 [wrapper] ==== wrapper stdout END ====
[2025-11-23 22:25:08] 2025-11-23 21:13:43,626 [wrapper] ==== wrapper stderr END ====
[2025-11-23 22:25:08]  *** Error codes and diagnostics ***
[2025-11-23 22:25:08]     "exeErrorCode": 0,
[2025-11-23 22:25:08]     "exeErrorDiag": "",
[2025-11-23 22:25:08]     "pilotErrorCode": 0,
[2025-11-23 22:25:08]     "pilotErrorDiag": "",
[2025-11-23 22:25:08]  *** Listing of results directory ***
[2025-11-23 22:25:08] total 1316896
[2025-11-23 22:25:08] -rw-r--r-- 1 boinc boinc    576529 Nov 20 14:12 pilot3.tar.gz
[2025-11-23 22:25:08] -rw-r--r-- 1 boinc boinc      5112 Nov 20 14:41 queuedata.json
[2025-11-23 22:25:08] -rwx------ 1 boinc boinc     36292 Nov 20 14:41 runpilot2-wrapper.sh
[2025-11-23 22:25:08] -rw-r--r-- 1 boinc boinc       100 Nov 23 05:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 22:25:08] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 05:28 run_atlas
[2025-11-23 22:25:08] -rw-r--r-- 1 boinc boinc       105 Nov 23 05:28 job.xml
[2025-11-23 22:25:08] -rw-r--r-- 1 boinc boinc      6685 Nov 23 05:28 init_data.xml
[2025-11-23 22:25:08] -rw-r--r-- 2 boinc boinc 410536363 Nov 23 05:28 EVNT.47493127._000547.pool.root.1
[2025-11-23 22:25:08] -rw-r--r-- 2 boinc boinc     15847 Nov 23 05:28 start_atlas.sh
[2025-11-23 22:25:08] drwxrwx--x 2 boinc boinc      4096 Nov 23 05:28 shared
[2025-11-23 22:25:08] -rw-r--r-- 2 boinc boinc    590104 Nov 23 05:28 input.tar.gz
[2025-11-23 22:25:08] -rw-r--r-- 1 boinc boinc         0 Nov 23 05:28 boinc_lockfile
[2025-11-23 22:25:08] -rw-r--r-- 1 boinc boinc      2785 Nov 23 05:28 pandaJob.out
[2025-11-23 22:25:08] -rw------- 1 boinc boinc    989784 Nov 23 05:28 agis_schedconf.cvmfs.json
[2025-11-23 22:25:08] drwx------ 5 boinc boinc      4096 Nov 23 05:28 pilot3
[2025-11-23 22:25:08] -rw-r--r-- 1 boinc boinc       532 Nov 23 22:04 boinc_task_state.xml
[2025-11-23 22:25:08] -rw------- 1 boinc boinc 914397564 Nov 23 22:12 HITS.47523449._005470.pool.root.1
[2025-11-23 22:25:08] -rw------- 1 boinc boinc      1039 Nov 23 22:12 memory_monitor_summary.json
[2025-11-23 22:25:08] -rw------- 1 boinc boinc   1526164 Nov 23 22:12 agis_ddmendpoints.agis.ALL.json
[2025-11-23 22:25:08] -rw------- 1 boinc boinc   1703652 Nov 23 22:12 log.47523449._005470.job.log.tgz.1
[2025-11-23 22:25:08] -rw------- 1 boinc boinc        95 Nov 23 22:12 pilot_heartbeat.json
[2025-11-23 22:25:08] -rw------- 1 boinc boinc      8589 Nov 23 22:12 heartbeat.json
[2025-11-23 22:25:08] -rw------- 1 boinc boinc      4908 Nov 23 22:13 pilotlog.txt
[2025-11-23 22:25:08] -rw------- 1 boinc boinc   8120317 Nov 23 22:13 log.47523449._005470.job.log.1
[2025-11-23 22:25:08] -rw------- 1 boinc boinc       353 Nov 23 22:13 output.list
[2025-11-23 22:25:08] -rw-r--r-- 1 boinc boinc       620 Nov 23 22:13 runtime_log
[2025-11-23 22:25:08] -rw------- 1 boinc boinc   9840640 Nov 23 22:13 result.tar.gz
[2025-11-23 22:25:08] -rw-r--r-- 1 boinc boinc      9206 Nov 23 22:13 runtime_log.err
[2025-11-23 22:25:08] -rw------- 1 boinc boinc       671 Nov 23 22:13 ltoNDmD6Jg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9yHKDmAWCYpn.diag
[2025-11-23 22:25:08] -rw-r--r-- 1 boinc boinc      8192 Nov 23 22:25 boinc_mmap_file
[2025-11-23 22:25:08] -rw-r--r-- 1 boinc boinc        28 Nov 23 22:25 wrapper_checkpoint.txt
[2025-11-23 22:25:08] -rw-r--r-- 1 boinc boinc     21077 Nov 23 22:25 stderr.txt
[2025-11-23 22:25:08] HITS file was successfully produced:
[2025-11-23 22:25:08] -rw------- 1 boinc boinc 914397564 Nov 23 22:12 shared/HITS.pool.root.1
[2025-11-23 22:25:08]  *** Contents of shared directory: ***
[2025-11-23 22:25:08] total 1304100
[2025-11-23 22:25:08] -rw-r--r-- 2 boinc boinc 410536363 Nov 23 05:28 ATLAS.root_0
[2025-11-23 22:25:08] -rw-r--r-- 2 boinc boinc     15847 Nov 23 05:28 start_atlas.sh
[2025-11-23 22:25:08] -rw-r--r-- 2 boinc boinc    590104 Nov 23 05:28 input.tar.gz
[2025-11-23 22:25:08] -rw------- 1 boinc boinc 914397564 Nov 23 22:12 HITS.pool.root.1
[2025-11-23 22:25:08] -rw------- 1 boinc boinc   9840640 Nov 23 22:13 result.tar.gz
22:25:10 (1012909): run_atlas exited; CPU time 232126.552186
22:25:10 (1012909): called boinc_finish(0)

</stderr_txt>
]]>

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