Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:25:22 (2801750): wrapper (7.7.26015): starting
22:25:22 (2801750): wrapper: running run_atlas (--nthreads 4)
[2025-11-23 22:25:22] Arguments: --nthreads 4
[2025-11-23 22:25:22] Threads: 4
[2025-11-23 22:25:22] Checking for CVMFS
[2025-11-23 22:25:22] No cvmfs_config command found, will try listing directly
[2025-11-23 22:25:22] CVMFS is ok
[2025-11-23 22:25:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 22:25:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 22:25:22] Further information can be found at the LHC@home message board.
[2025-11-23 22:25:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 22:25:22] Checking for apptainer binary...
[2025-11-23 22:25:22] which: no apptainer in ((null))
[2025-11-23 22:25:22] apptainer is not installed, using version from CVMFS
[2025-11-23 22:25:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 22:25:22] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot96/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2025-11-23 22:25:22] apptainer works
[2025-11-23 22:25:22] Set ATHENA_PROC_NUMBER=4
[2025-11-23 22:25:22] Set ATHENA_CORE_NUMBER=4
[2025-11-23 22:25:22] Starting ATLAS job with PandaID=6893848622
[2025-11-23 22:25:22] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot96/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 14:56:58]  *** The last 200 lines of the pilot log: ***
[2025-11-24 14:56:58] 2025-11-24 13:50:37,671 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 14:56:58] 2025-11-24 13:50:38,725 | INFO     | time since job start (59102s) is within the limit (172800.0s)
[2025-11-24 14:56:58] 2025-11-24 13:50:39,839 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 14:56:58] 2025-11-24 13:50:39,859 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2668.9010703124995
[2025-11-24 14:56:58] 2025-11-24 13:50:39,883 | INFO     | using path: /scratch/boinc/var/slot96/slots/0/PanDA_Pilot-6893848622/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 14:56:58] 2025-11-24 13:50:39,884 | INFO     | extracted standard info from prmon json
[2025-11-24 14:56:58] 2025-11-24 13:50:39,884 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 14:56:58] 2025-11-24 13:50:39,884 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 14:56:58] 2025-11-24 13:50:39,901 | INFO     | fitting pss+swap vs Time
[2025-11-24 14:56:58] 2025-11-24 13:50:39,902 | INFO     | sum of square deviations: 282128401083.28986
[2025-11-24 14:56:58] 2025-11-24 13:50:39,925 | INFO     | sum of deviations: 691916879293.2062
[2025-11-24 14:56:58] 2025-11-24 13:50:39,925 | INFO     | mean x: 1763962696.1001031
[2025-11-24 14:56:58] 2025-11-24 13:50:39,925 | INFO     | mean y: 2280451.9360165116
[2025-11-24 14:56:58] 2025-11-24 13:50:39,925 | INFO     | intersect: -4323819150.900117
[2025-11-24 14:56:58] 2025-11-24 13:50:39,926 | INFO     | chi2: 4.40569199518581
[2025-11-24 14:56:58] 2025-11-24 13:50:39,927 | INFO     | sum of square deviations: 277783586413.23956
[2025-11-24 14:56:58] 2025-11-24 13:50:39,951 | INFO     | sum of deviations: 917525766153.2126
[2025-11-24 14:56:58] 2025-11-24 13:50:39,951 | INFO     | mean x: 1763962543.6006224
[2025-11-24 14:56:58] 2025-11-24 13:50:39,951 | INFO     | mean y: 2288364.977178423
[2025-11-24 14:56:58] 2025-11-24 13:50:39,951 | INFO     | intersect: -5824121701.868988
[2025-11-24 14:56:58] 2025-11-24 13:50:39,952 | INFO     | chi2: 1.782332784148978
[2025-11-24 14:56:58] 2025-11-24 13:50:39,953 | INFO     | current chi2=1.782332784148978 (change=59.54477103491189 %)
[2025-11-24 14:56:58] 2025-11-24 13:50:39,954 | INFO     | sum of square deviations: 273483609793.18875
[2025-11-24 14:56:58] 2025-11-24 13:50:39,976 | INFO     | sum of deviations: 925836149629.7499
[2025-11-24 14:56:58] 2025-11-24 13:50:39,976 | INFO     | mean x: 1763962391.101147
[2025-11-24 14:56:58] 2025-11-24 13:50:39,977 | INFO     | mean y: 2288657.590198123
[2025-11-24 14:56:58] 2025-11-24 13:50:39,977 | INFO     | intersect: -5969331175.509748
[2025-11-24 14:56:58] 2025-11-24 13:50:39,978 | INFO     | chi2: 1.7414469094627045
[2025-11-24 14:56:58] 2025-11-24 13:50:39,978 | INFO     | current chi2=1.7414469094627045 (change=2.2939529054219534 %)
[2025-11-24 14:56:58] 2025-11-24 13:50:39,978 | INFO     | right removable region: 958
[2025-11-24 14:56:58] 2025-11-24 13:50:39,979 | INFO     | sum of square deviations: 277783527243.23956
[2025-11-24 14:56:58] 2025-11-24 13:50:40,002 | INFO     | sum of deviations: 530277321086.4175
[2025-11-24 14:56:58] 2025-11-24 13:50:40,002 | INFO     | mean x: 1763962848.6006224
[2025-11-24 14:56:58] 2025-11-24 13:50:40,003 | INFO     | mean y: 2286113.9699170124
[2025-11-24 14:56:58] 2025-11-24 13:50:40,003 | INFO     | intersect: -3365046366.594474
[2025-11-24 14:56:58] 2025-11-24 13:50:40,004 | INFO     | chi2: 2.7358253417979954
[2025-11-24 14:56:58] 2025-11-24 13:50:40,004 | INFO     | current chi2=2.7358253417979954 (change=37.902482861092246 %)
[2025-11-24 14:56:58] 2025-11-24 13:50:40,005 | INFO     | sum of square deviations: 273483491453.18875
[2025-11-24 14:56:58] 2025-11-24 13:50:40,026 | INFO     | sum of deviations: 503721900093.76886
[2025-11-24 14:56:58] 2025-11-24 13:50:40,027 | INFO     | mean x: 1763963001.101147
[2025-11-24 14:56:58] 2025-11-24 13:50:40,027 | INFO     | mean y: 2287055.301355579
[2025-11-24 14:56:58] 2025-11-24 13:50:40,027 | INFO     | intersect: -3246709035.425628
[2025-11-24 14:56:58] 2025-11-24 13:50:40,028 | INFO     | chi2: 2.7219868997189214
[2025-11-24 14:56:58] 2025-11-24 13:50:40,028 | INFO     | current chi2=2.7219868997189214 (change=0.5058233019356181 %)
[2025-11-24 14:56:58] 2025-11-24 13:50:40,028 | INFO     | left removable region: 20
[2025-11-24 14:56:58] 2025-11-24 13:50:40,029 | INFO     | sum of square deviations: 255907854344.46912
[2025-11-24 14:56:58] 2025-11-24 13:50:40,051 | INFO     | sum of deviations: 704657547350.8787
[2025-11-24 14:56:58] 2025-11-24 13:50:40,052 | INFO     | mean x: 1763962970.6034114
[2025-11-24 14:56:58] 2025-11-24 13:50:40,052 | INFO     | mean y: 2296499.475479744
[2025-11-24 14:56:58] 2025-11-24 13:50:40,052 | INFO     | intersect: -4854880798.45154
[2025-11-24 14:56:58] 2025-11-24 13:50:40,053 | INFO     | chi2: 0.042776031088000516
[2025-11-24 14:56:58] 2025-11-24 13:50:40,053 | INFO     | current memory leak: 2.75 B/s (using 938 data points, chi2=0.04)
[2025-11-24 14:56:58] 2025-11-24 13:50:40,054 | INFO     | could have reported an average CPU frequency of 2659 MHz (36 samples)
[2025-11-24 14:56:58] 2025-11-24 13:50:40,054 | INFO     | ..............................
[2025-11-24 14:56:58] 2025-11-24 13:50:40,054 | INFO     | . Timing measurements:
[2025-11-24 14:56:58] 2025-11-24 13:50:40,054 | INFO     | . get job = 0 s
[2025-11-24 14:56:58] 2025-11-24 13:50:40,055 | INFO     | . initial setup = 1 s
[2025-11-24 14:56:58] 2025-11-24 13:50:40,055 | INFO     | . payload setup = 9 s
[2025-11-24 14:56:58] 2025-11-24 13:50:40,055 | INFO     | . stage-in = 0 s
[2025-11-24 14:56:58] 2025-11-24 13:50:40,055 | INFO     | . payload execution = 59059 s
[2025-11-24 14:56:58] 2025-11-24 13:50:40,055 | INFO     | . stage-out = 2 s
[2025-11-24 14:56:58] 2025-11-24 13:50:40,055 | INFO     | . log creation = 0 s
[2025-11-24 14:56:58] 2025-11-24 13:50:40,055 | INFO     | ..............................
[2025-11-24 14:56:58] 2025-11-24 13:50:40,220 | INFO     | 
[2025-11-24 14:56:58] 2025-11-24 13:50:40,220 | INFO     | job summary report
[2025-11-24 14:56:58] 2025-11-24 13:50:40,220 | INFO     | --------------------------------------------------
[2025-11-24 14:56:58] 2025-11-24 13:50:40,220 | INFO     | PanDA job id: 6893848622
[2025-11-24 14:56:58] 2025-11-24 13:50:40,221 | INFO     | task id: 47523449
[2025-11-24 14:56:58] 2025-11-24 13:50:40,221 | INFO     | errors: (none)
[2025-11-24 14:56:58] 2025-11-24 13:50:40,221 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 14:56:58] 2025-11-24 13:50:40,221 | INFO     | pilot state: finished 
[2025-11-24 14:56:58] 2025-11-24 13:50:40,221 | INFO     | transexitcode: 0
[2025-11-24 14:56:58] 2025-11-24 13:50:40,221 | INFO     | exeerrorcode: 0
[2025-11-24 14:56:58] 2025-11-24 13:50:40,221 | INFO     | exeerrordiag: 
[2025-11-24 14:56:58] 2025-11-24 13:50:40,221 | INFO     | exitcode: 0
[2025-11-24 14:56:58] 2025-11-24 13:50:40,221 | INFO     | exitmsg: OK
[2025-11-24 14:56:58] 2025-11-24 13:50:40,221 | INFO     | cpuconsumptiontime: 230273 s
[2025-11-24 14:56:58] 2025-11-24 13:50:40,221 | INFO     | nevents: 1000
[2025-11-24 14:56:58] 2025-11-24 13:50:40,222 | INFO     | neventsw: 0
[2025-11-24 14:56:58] 2025-11-24 13:50:40,222 | INFO     | pid: 2828554
[2025-11-24 14:56:58] 2025-11-24 13:50:40,222 | INFO     | pgrp: 2828554
[2025-11-24 14:56:58] 2025-11-24 13:50:40,222 | INFO     | corecount: 4
[2025-11-24 14:56:58] 2025-11-24 13:50:40,222 | INFO     | event service: False
[2025-11-24 14:56:58] 2025-11-24 13:50:40,222 | INFO     | sizes: {0: 2298818, 7: 2299080, 11: 2299108, 59073: 2353616, 59074: 2353615, 59077: 2363662, 59085: 2363852}
[2025-11-24 14:56:58] 2025-11-24 13:50:40,222 | INFO     | --------------------------------------------------
[2025-11-24 14:56:58] 2025-11-24 13:50:40,222 | INFO     | 
[2025-11-24 14:56:58] 2025-11-24 13:50:40,222 | INFO     | executing command: ls -lF /scratch/boinc/var/slot96/slots/0
[2025-11-24 14:56:58] 2025-11-24 13:50:40,250 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 14:56:58] 2025-11-24 13:50:40,251 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 14:56:58] 2025-11-24 13:50:40,251 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 14:56:58] 2025-11-24 13:50:40,251 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 14:56:58] 2025-11-24 13:50:40,251 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 14:56:58] 2025-11-24 13:50:40,251 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 14:56:58] 2025-11-24 13:50:40,251 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 14:56:58] 2025-11-24 13:50:40,251 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 14:56:58] 2025-11-24 13:50:40,251 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 14:56:58] 2025-11-24 13:50:40,252 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 14:56:58] 2025-11-24 13:50:40,252 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 14:56:58] 2025-11-24 13:50:40,252 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 14:56:58] 2025-11-24 13:50:40,252 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 14:56:58] 2025-11-24 13:50:40,252 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 14:56:58] 2025-11-24 13:50:40,252 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 14:56:58] 2025-11-24 13:50:40,252 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 14:56:58] 2025-11-24 13:50:40,252 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 14:56:58] 2025-11-24 13:50:40,252 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 14:56:58] 2025-11-24 13:50:40,252 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 14:56:58] 2025-11-24 13:50:40,253 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 14:56:58] 2025-11-24 13:50:40,253 | INFO     | job 6893848622 has completed (purged errors)
[2025-11-24 14:56:58] 2025-11-24 13:50:40,253 | INFO     | overall cleanup function is called
[2025-11-24 14:56:58] 2025-11-24 13:50:41,271 | INFO     | --- collectZombieJob: --- 10, [2828554]
[2025-11-24 14:56:58] 2025-11-24 13:50:41,271 | INFO     | zombie collector waiting for pid 2828554
[2025-11-24 14:56:58] 2025-11-24 13:50:41,271 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 14:56:58] 2025-11-24 13:50:41,272 | INFO     | collected zombie processes
[2025-11-24 14:56:58] 2025-11-24 13:50:41,272 | INFO     | will attempt to kill all subprocesses of pid=2828554
[2025-11-24 14:56:58] 2025-11-24 13:50:42,095 | INFO     | process IDs to be killed: [2828554] (in reverse order)
[2025-11-24 14:56:58] 2025-11-24 13:50:42,363 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 14:56:58] 2025-11-24 13:50:42,364 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 14:56:58] 2025-11-24 13:50:42,396 | INFO     | did not find any defunct processes belonging to 2828554
[2025-11-24 14:56:58] 2025-11-24 13:50:42,427 | INFO     | did not find any defunct processes belonging to 2828554
[2025-11-24 14:56:58] 2025-11-24 13:50:42,429 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 14:56:58] 2025-11-24 13:50:42,429 | INFO     | ready for new job
[2025-11-24 14:56:58] 2025-11-24 13:50:42,429 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 14:56:58] 2025-11-24 13:50:42,436 | INFO     | ***************************************
[2025-11-24 14:56:58] 2025-11-24 13:50:42,436 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 14:56:58] 2025-11-24 13:50:42,437 | INFO     | ***************************************
[2025-11-24 14:56:58] 2025-11-24 13:50:42,437 | INFO     | 
[2025-11-24 14:56:58] 2025-11-24 13:50:42,447 | INFO     | architecture information:
[2025-11-24 14:56:58] 2025-11-24 13:50:42,448 | INFO     | executing command: cat /etc/os-release
[2025-11-24 14:56:58] 2025-11-24 13:50:42,473 | INFO     | cat /etc/os-release:
[2025-11-24 14:56:58] NAME="CentOS Linux"
[2025-11-24 14:56:58] VERSION="7 (Core)"
[2025-11-24 14:56:58] ID="centos"
[2025-11-24 14:56:58] ID_LIKE="rhel fedora"
[2025-11-24 14:56:58] VERSION_ID="7"
[2025-11-24 14:56:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 14:56:58] ANSI_COLOR="0;31"
[2025-11-24 14:56:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 14:56:58] HOME_URL="https://www.centos.org/"
[2025-11-24 14:56:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 14:56:58] 
[2025-11-24 14:56:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 14:56:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 14:56:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 14:56:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 14:56:58] 
[2025-11-24 14:56:58] 2025-11-24 13:50:42,474 | INFO     | ***************************************
[2025-11-24 14:56:58] 2025-11-24 13:50:42,976 | INFO     | executing command: df -mP /scratch/boinc/var/slot96/slots/0
[2025-11-24 14:56:58] 2025-11-24 13:50:42,998 | INFO     | sufficient remaining disk space (3303231455232 B)
[2025-11-24 14:56:58] 2025-11-24 13:50:42,999 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 14:56:58] 2025-11-24 13:50:42,999 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 14:56:58] 2025-11-24 13:50:42,999 | INFO     | update_server=False
[2025-11-24 14:56:58] 2025-11-24 13:50:42,999 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 14:56:58] 2025-11-24 13:50:42,999 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 14:56:58] 2025-11-24 13:50:43,000 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 14:56:58] 2025-11-24 13:50:43,064 | INFO     | all job control threads have been joined
[2025-11-24 14:56:58] 2025-11-24 13:50:43,244 | INFO     | all data control threads have been joined
[2025-11-24 14:56:58] 2025-11-24 13:50:43,683 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:56:58] 2025-11-24 13:50:43,683 | INFO     | aborting loop
[2025-11-24 14:56:58] 2025-11-24 13:50:43,830 | INFO     | all payload control threads have been joined
[2025-11-24 14:56:58] 2025-11-24 13:50:44,004 | INFO     | [job] retrieve thread has finished
[2025-11-24 14:56:58] 2025-11-24 13:50:44,069 | INFO     | [job] control thread has finished
[2025-11-24 14:56:58] 2025-11-24 13:50:44,249 | INFO     | [data] control thread has finished
[2025-11-24 14:56:58] 2025-11-24 13:50:44,688 | INFO     | [job] job monitor thread has finished
[2025-11-24 14:56:58] 2025-11-24 13:50:44,824 | INFO     | [data] copytool_in thread has finished
[2025-11-24 14:56:58] 2025-11-24 13:50:44,835 | INFO     | [payload] control thread has finished
[2025-11-24 14:56:58] 2025-11-24 13:50:45,005 | INFO     | [data] copytool_out thread has finished
[2025-11-24 14:56:58] 2025-11-24 13:50:45,168 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 14:56:58] 2025-11-24 13:50:45,170 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:56:58] 2025-11-24 13:50:45,171 | INFO     | [job] validate thread has finished
[2025-11-24 14:56:58] 2025-11-24 13:50:45,240 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 14:56:58] 2025-11-24 13:50:45,433 | INFO     | [payload] validate_post thread has finished
[2025-11-24 14:56:58] 2025-11-24 13:50:45,464 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 14:56:58] 2025-11-24 13:50:45,522 | INFO     | [payload] failed_post thread has finished
[2025-11-24 14:56:58] 2025-11-24 13:50:46,175 | INFO     | [job] queue monitor thread has finished
[2025-11-24 14:56:58] 2025-11-24 13:50:47,005 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 14:56:58] 2025-11-24 13:50:53,373 | INFO     | job.realtimelogging is not enabled
[2025-11-24 14:56:58] 2025-11-24 13:50:54,378 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 14:56:58] 2025-11-24 13:51:12,802 | INFO     | PID=2808591 has CPU usage=11.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-24 14:56:58] 2025-11-24 13:51:12,806 | INFO     | .. there are 10 such processes running
[2025-11-24 14:56:58] 2025-11-24 13:51:12,807 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 14:56:58] 2025-11-24 13:51:12,807 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 14:56:58] 2025-11-24 13:51:12,807 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 14:56:58] 2025-11-24 13:51:15,193 | INFO     | [monitor] cgroup control has ended
[2025-11-24 14:56:58] 2025-11-24 13:51:15,242 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22439807969088)>', '<ExcThread(monitor, started 22439566206720)>']
[2025-11-24 14:56:58] 2025-11-24 13:51:15,822 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 14:56:58] 2025-11-24 13:51:15,822 | INFO     | [monitor] control thread has ended
[2025-11-24 14:56:58] 2025-11-24 13:51:20,258 | INFO     | all workflow threads have been joined
[2025-11-24 14:56:58] 2025-11-24 13:51:20,262 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 14:56:58] 2025-11-24 13:51:20,262 | INFO     | traces error code: 0
[2025-11-24 14:56:58] 2025-11-24 13:51:20,262 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 14:56:58] 2025-11-24 13:51:20,402 [wrapper] ==== pilot stdout END ====
[2025-11-24 14:56:58] 2025-11-24 13:51:20,407 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 14:56:58] 2025-11-24 13:51:20,411 [wrapper] pilotpid: 2808591
[2025-11-24 14:56:58] 2025-11-24 13:51:20,417 [wrapper] Pilot exit status: 0
[2025-11-24 14:56:58] 2025-11-24 13:51:20,431 [wrapper] pandaids: 6893848622
[2025-11-24 14:56:58] 2025-11-24 13:51:20,609 [wrapper] cleanup supervisor_pilot  358364 2808592
[2025-11-24 14:56:58] 2025-11-24 13:51:20,613 [wrapper] Test setup, not cleaning
[2025-11-24 14:56:58] 2025-11-24 13:51:20,616 [wrapper] apfmon messages muted
[2025-11-24 14:56:58] 2025-11-24 13:51:20,618 [wrapper] ==== wrapper stdout END ====
[2025-11-24 14:56:58] 2025-11-24 13:51:20,621 [wrapper] ==== wrapper stderr END ====
[2025-11-24 14:56:58]  *** Error codes and diagnostics ***
[2025-11-24 14:56:58]     "exeErrorCode": 0,
[2025-11-24 14:56:58]     "exeErrorDiag": "",
[2025-11-24 14:56:58]     "pilotErrorCode": 0,
[2025-11-24 14:56:58]     "pilotErrorDiag": "",
[2025-11-24 14:56:58]  *** Listing of results directory ***
[2025-11-24 14:56:58] total 1312376
[2025-11-24 14:56:58] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-24 14:56:58] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:49 queuedata.json
[2025-11-24 14:56:58] -rwx------ 1 boinc boinc     36292 Nov 20 11:49 runpilot2-wrapper.sh
[2025-11-24 14:56:58] -rw-r--r-- 1 boinc boinc       100 Nov 23 22:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 14:56:58] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 22:25 run_atlas
[2025-11-24 14:56:58] -rw-r--r-- 1 boinc boinc       105 Nov 23 22:25 job.xml
[2025-11-24 14:56:58] -rw-r--r-- 1 boinc boinc      6684 Nov 23 22:25 init_data.xml
[2025-11-24 14:56:58] -rw-r--r-- 2 boinc boinc 410335890 Nov 23 22:25 EVNT.47493127._000284.pool.root.1
[2025-11-24 14:56:58] -rw-r--r-- 2 boinc boinc     15847 Nov 23 22:25 start_atlas.sh
[2025-11-24 14:56:58] drwxrwx--x 2 boinc boinc      4096 Nov 23 22:25 shared
[2025-11-24 14:56:58] -rw-r--r-- 2 boinc boinc    590101 Nov 23 22:25 input.tar.gz
[2025-11-24 14:56:58] -rw-r--r-- 1 boinc boinc         0 Nov 23 22:25 boinc_lockfile
[2025-11-24 14:56:58] -rw-r--r-- 1 boinc boinc      2786 Nov 23 22:25 pandaJob.out
[2025-11-24 14:56:58] -rw------- 1 boinc boinc    989786 Nov 23 22:25 agis_schedconf.cvmfs.json
[2025-11-24 14:56:58] drwx------ 5 boinc boinc      4096 Nov 23 22:25 pilot3
[2025-11-24 14:56:58] -rw-r--r-- 1 boinc boinc       532 Nov 24 14:44 boinc_task_state.xml
[2025-11-24 14:56:58] -rw------- 1 boinc boinc 910167684 Nov 24 14:49 HITS.47523449._002838.pool.root.1
[2025-11-24 14:56:58] -rw------- 1 boinc boinc      1038 Nov 24 14:50 memory_monitor_summary.json
[2025-11-24 14:56:58] -rw------- 1 boinc boinc   1516227 Nov 24 14:50 agis_ddmendpoints.agis.ALL.json
[2025-11-24 14:56:58] -rw------- 1 boinc boinc   1697478 Nov 24 14:50 log.47523449._002838.job.log.tgz.1
[2025-11-24 14:56:58] -rw------- 1 boinc boinc      8593 Nov 24 14:50 heartbeat.json
[2025-11-24 14:56:58] -rw------- 1 boinc boinc        95 Nov 24 14:51 pilot_heartbeat.json
[2025-11-24 14:56:58] -rw------- 1 boinc boinc      4908 Nov 24 14:51 pilotlog.txt
[2025-11-24 14:56:58] -rw------- 1 boinc boinc   8030137 Nov 24 14:51 log.47523449._002838.job.log.1
[2025-11-24 14:56:58] -rw------- 1 boinc boinc       353 Nov 24 14:51 output.list
[2025-11-24 14:56:58] -rw-r--r-- 1 boinc boinc       620 Nov 24 14:51 runtime_log
[2025-11-24 14:56:58] -rw------- 1 boinc boinc   9748480 Nov 24 14:51 result.tar.gz
[2025-11-24 14:56:58] -rw-r--r-- 1 boinc boinc      9206 Nov 24 14:51 runtime_log.err
[2025-11-24 14:56:58] -rw------- 1 boinc boinc       671 Nov 24 14:51 dluKDmjPHg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3XHKDm2BWIKn.diag
[2025-11-24 14:56:58] -rw-r--r-- 1 boinc boinc        28 Nov 24 14:56 wrapper_checkpoint.txt
[2025-11-24 14:56:58] -rw-r--r-- 1 boinc boinc      8192 Nov 24 14:56 boinc_mmap_file
[2025-11-24 14:56:58] -rw-r--r-- 1 boinc boinc     21089 Nov 24 14:56 stderr.txt
[2025-11-24 14:56:58] HITS file was successfully produced:
[2025-11-24 14:56:58] -rw------- 1 boinc boinc 910167684 Nov 24 14:49 shared/HITS.pool.root.1
[2025-11-24 14:56:58]  *** Contents of shared directory: ***
[2025-11-24 14:56:58] total 1299680
[2025-11-24 14:56:58] -rw-r--r-- 2 boinc boinc 410335890 Nov 23 22:25 ATLAS.root_0
[2025-11-24 14:56:58] -rw-r--r-- 2 boinc boinc     15847 Nov 23 22:25 start_atlas.sh
[2025-11-24 14:56:58] -rw-r--r-- 2 boinc boinc    590101 Nov 23 22:25 input.tar.gz
[2025-11-24 14:56:58] -rw------- 1 boinc boinc 910167684 Nov 24 14:49 HITS.pool.root.1
[2025-11-24 14:56:58] -rw------- 1 boinc boinc   9748480 Nov 24 14:51 result.tar.gz
14:56:59 (2801750): run_atlas exited; CPU time 233274.089176
14:56:59 (2801750): called boinc_finish(0)

</stderr_txt>
]]>

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